Gcaud8729.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud8729.t1
Unique Name	Gcaud8729.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	305

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_61_length_58397_cov_4.831458	contig	NODE_61_length_58397_cov_4.831458:45473..46537 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	2880.D8LEA1
Preferred name	UBE2Q1
PFAMs	PARP,UQ_con
Max annot lvl	2759\|Eukaryota
KEGG ko	ko:K10582,ko:K19362
KEGG Pathway	ko04120,map04120
GOs	GO:0000003,GO:0000209,GO:0001967,GO:0002790,GO:0003674,GO:0003824,GO:0004842,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005829,GO:0005886,GO:0006464,GO:0006807,GO:0006810,GO:0007154,GO:0007267,GO:0007275,GO:0007565,GO:0007566,GO:0007610,GO:0007617,GO:0007618,GO:0007631,GO:0008104,GO:0008150,GO:0008152,GO:0009306,GO:0009566,GO:0009914,GO:0009987,GO:0010817,GO:0015031,GO:0015833,GO:0016020,GO:0016567,GO:0016740,GO:0019098,GO:0019538,GO:0019787,GO:0019953,GO:0022414,GO:0023052,GO:0023061,GO:0030072,GO:0032446,GO:0032501,GO:0032502,GO:0032504,GO:0032940,GO:0033036,GO:0036211,GO:0036477,GO:0040011,GO:0042886,GO:0043025,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044297,GO:0044424,GO:0044444,GO:0044464,GO:0044703,GO:0044706,GO:0045184,GO:0046879,GO:0046903,GO:0048609,GO:0048731,GO:0048856,GO:0051179,GO:0051234,GO:0051704,GO:0051705,GO:0061458,GO:0061631,GO:0061650,GO:0065007,GO:0065008,GO:0070459,GO:0070647,GO:0070936,GO:0071702,GO:0071704,GO:0071705,GO:0071944,GO:0097458,GO:0140096,GO:1901564
Evalue	1.28e-25
EggNOG OGs	KOG0897@1\|root,KOG0897@2759\|Eukaryota
EC	2.3.2.23
Description	ubiquitin conjugating enzyme activity
COG category	O
BRITE	ko00000,ko00001,ko01000,ko03036,ko04121

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud8729	Gcaud8729	Gracilaria caudata M_176_S67 male	gene	NODE_61_length_58397_cov_4.831458 45473..46537 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud8729.t1	Gcaud8729.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_61_length_58397_cov_4.831458 45473..46537 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud8729.t1.start1	Gcaud8729.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_61_length_58397_cov_4.831458 45473..45475 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud8729.t1.CDS1	Gcaud8729.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_61_length_58397_cov_4.831458 45473..45668 +
Gcaud8729.t1.CDS2	Gcaud8729.t1.CDS2	Gracilaria caudata M_176_S67 male	CDS	NODE_61_length_58397_cov_4.831458 45819..46537 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud8729.t1.exon1	Gcaud8729.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_61_length_58397_cov_4.831458 45473..45668 +
Gcaud8729.t1.exon2	Gcaud8729.t1.exon2	Gracilaria caudata M_176_S67 male	exon	NODE_61_length_58397_cov_4.831458 45819..46537 +

The following intron feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud8729.t1.intron1	Gcaud8729.t1.intron1	Gracilaria caudata M_176_S67 male	intron	NODE_61_length_58397_cov_4.831458 45669..45818 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud8729.t1.stop1	Gcaud8729.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_61_length_58397_cov_4.831458 46535..46537 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_61_length_58397_cov_4.831458:45473..46537+
coding sequence from alignment at NODE_61_length_58397_cov_4.831458:45473..46537+

mRNA sequence

>Gcaud8729.t1 ID=Gcaud8729.t1|Name=Gcaud8729.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=305bp
MDTHALEALRAWKPGEGTANISSCQSKPPVVVYDGSHGSSFTARALFEFP
DGGRFYLLLSGSKDNVLSHASRIYDNNNSNAAAASTARAKAATAALRVEP
DFLSTANSAKRKRPPPCAAKDPIFAPTRIATTTLMKQLSILQGMDTRRDG
FTAQPVADDLYRWNVMLYFDNVSDCEIAEDLKHLPDYDGIQLELRFPGDY
PNVPPFVRVVSPYVTGGHVASHGGICMELLTTSGWAPVYSLDLVCIQIRA
LLIHGKARVHRRIHKSHAQAYTYEGALSDHRNIVRVHRWHVHDPNRTKSK
KQRS*

spliced messenger RNA

>Gcaud8729.t1 ID=Gcaud8729.t1|Name=Gcaud8729.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=915bp|location=Sequence derived from alignment at NODE_61_length_58397_cov_4.831458:45473..46537+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGATACACACGCATTGGAAGCGCTTCGCGCCTGGAAACCGGGCGAAGG
CACAGCTAACATATCTTCATGTCAGTCCAAGCCTCCGGTCGTCGTGTATG
ACGGAAGCCACGGCTCTTCCTTCACGGCACGCGCCCTCTTCGAGTTTCCA
GATGGAGGCCGCTTCTACCTCCTGCTTTCTGGTTCCAAGGACAACGTGCT
CTCGCACGCAAGTCGTATCTACGACAATAACAACTCGAACGCAGCAGCTG
CCAGCACAGCTAGAGCGAAAGCGGCCACAGCCGCTCTTCGAGTTGAACCA
GATTTCCTTTCAACAGCAAACAGCGCCAAAAGAAAGCGTCCACCACCTTG
TGCGGCGAAAGATCCCATTTTTGCCCCTACAAGAATCGCTACCACGACGC
TGATGAAACAGCTGTCAATCCTACAGGGCATGGACACAAGACGTGATGGA
TTCACAGCTCAGCCTGTAGCAGATGACTTGTATCGATGGAATGTCATGCT
TTACTTCGACAACGTCTCTGATTGTGAAATTGCGGAGGACTTGAAACATC
TTCCGGATTACGACGGTATTCAGCTTGAACTGCGTTTCCCAGGAGACTAT
CCAAACGTCCCACCCTTTGTCCGTGTTGTATCTCCCTATGTCACTGGCGG
TCATGTGGCATCTCATGGGGGGATTTGCATGGAGTTATTGACCACTTCAG
GCTGGGCACCTGTTTACAGCCTTGATCTGGTTTGCATCCAGATTCGTGCA
CTGCTAATCCATGGGAAAGCGAGAGTGCATCGTCGCATTCATAAATCCCA
TGCCCAAGCTTACACATACGAAGGTGCCCTGAGTGACCATCGCAACATTG
TCAGGGTTCACAGATGGCATGTTCATGACCCCAATCGTACCAAGTCAAAG
AAGCAACGAAGCTAA

protein sequence of Gcaud8729.t1

>Gcaud8729.t1 ID=Gcaud8729.t1|Name=Gcaud8729.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=305bp
MDTHALEALRAWKPGEGTANISSCQSKPPVVVYDGSHGSSFTARALFEFP
DGGRFYLLLSGSKDNVLSHASRIYDNNNSNAAAASTARAKAATAALRVEP
DFLSTANSAKRKRPPPCAAKDPIFAPTRIATTTLMKQLSILQGMDTRRDG
FTAQPVADDLYRWNVMLYFDNVSDCEIAEDLKHLPDYDGIQLELRFPGDY
PNVPPFVRVVSPYVTGGHVASHGGICMELLTTSGWAPVYSLDLVCIQIRA
LLIHGKARVHRRIHKSHAQAYTYEGALSDHRNIVRVHRWHVHDPNRTKSK
KQRS*

mRNA from alignment at NODE_61_length_58397_cov_4.831458:45473..46537+

Legend: polypeptidestart_codonCDSexonintronstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud8729.t1 ID=Gcaud8729.t1|Name=Gcaud8729.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1065bp|location=Sequence derived from alignment at NODE_61_length_58397_cov_4.831458:45473..46537+ (Gracilaria caudata M_176_S67 male)
ATGGATACACACGCATTGGAAGCGCTTCGCGCCTGGAAACCGGGCGAAGG
CACAGCTAACATATCTTCATGTCAGTCCAAGCCTCCGGTCGTCGTGTATG
ACGGAAGCCACGGCTCTTCCTTCACGGCACGCGCCCTCTTCGAGTTTCCA
GATGGAGGCCGCTTCTACCTCCTGCTTTCTGGTTCCAAGGACAACGGTAA
GAACTCAAGGAGCGAGCCCCTGACCGCCATGATCGAAGATGACTTAGGAC
TACCAGATGGCTTTCTGATCGATGTCAACACCTTCCTCTTCTCTAACTTC
AATGACAATACTCGAAATCTGTCTCCGTCCCAAATCGTACACCAAGTGCT
CTCGCACGCAAGTCGTATCTACGACAATAACAACTCGAACGCAGCAGCTG
CCAGCACAGCTAGAGCGAAAGCGGCCACAGCCGCTCTTCGAGTTGAACCA
GATTTCCTTTCAACAGCAAACAGCGCCAAAAGAAAGCGTCCACCACCTTG
TGCGGCGAAAGATCCCATTTTTGCCCCTACAAGAATCGCTACCACGACGC
TGATGAAACAGCTGTCAATCCTACAGGGCATGGACACAAGACGTGATGGA
TTCACAGCTCAGCCTGTAGCAGATGACTTGTATCGATGGAATGTCATGCT
TTACTTCGACAACGTCTCTGATTGTGAAATTGCGGAGGACTTGAAACATC
TTCCGGATTACGACGGTATTCAGCTTGAACTGCGTTTCCCAGGAGACTAT
CCAAACGTCCCACCCTTTGTCCGTGTTGTATCTCCCTATGTCACTGGCGG
TCATGTGGCATCTCATGGGGGGATTTGCATGGAGTTATTGACCACTTCAG
GCTGGGCACCTGTTTACAGCCTTGATCTGGTTTGCATCCAGATTCGTGCA
CTGCTAATCCATGGGAAAGCGAGAGTGCATCGTCGCATTCATAAATCCCA
TGCCCAAGCTTACACATACGAAGGTGCCCTGAGTGACCATCGCAACATTG
TCAGGGTTCACAGATGGCATGTTCATGACCCCAATCGTACCAAGTCAAAG
AAGCAACGAAGCTAA

Coding sequence (CDS) from alignment at NODE_61_length_58397_cov_4.831458:45473..46537+

>Gcaud8729.t1 ID=Gcaud8729.t1|Name=Gcaud8729.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=915bp|location=Sequence derived from alignment at NODE_61_length_58397_cov_4.831458:45473..46537+ (Gracilaria caudata M_176_S67 male)
ATGGATACACACGCATTGGAAGCGCTTCGCGCCTGGAAACCGGGCGAAGG
CACAGCTAACATATCTTCATGTCAGTCCAAGCCTCCGGTCGTCGTGTATG
ACGGAAGCCACGGCTCTTCCTTCACGGCACGCGCCCTCTTCGAGTTTCCA
GATGGAGGCCGCTTCTACCTCCTGCTTTCTGGTTCCAAGGACAACGTGCT
CTCGCACGCAAGTCGTATCTACGACAATAACAACTCGAACGCAGCAGCTG
CCAGCACAGCTAGAGCGAAAGCGGCCACAGCCGCTCTTCGAGTTGAACCA
GATTTCCTTTCAACAGCAAACAGCGCCAAAAGAAAGCGTCCACCACCTTG
TGCGGCGAAAGATCCCATTTTTGCCCCTACAAGAATCGCTACCACGACGC
TGATGAAACAGCTGTCAATCCTACAGGGCATGGACACAAGACGTGATGGA
TTCACAGCTCAGCCTGTAGCAGATGACTTGTATCGATGGAATGTCATGCT
TTACTTCGACAACGTCTCTGATTGTGAAATTGCGGAGGACTTGAAACATC
TTCCGGATTACGACGGTATTCAGCTTGAACTGCGTTTCCCAGGAGACTAT
CCAAACGTCCCACCCTTTGTCCGTGTTGTATCTCCCTATGTCACTGGCGG
TCATGTGGCATCTCATGGGGGGATTTGCATGGAGTTATTGACCACTTCAG
GCTGGGCACCTGTTTACAGCCTTGATCTGGTTTGCATCCAGATTCGTGCA
CTGCTAATCCATGGGAAAGCGAGAGTGCATCGTCGCATTCATAAATCCCA
TGCCCAAGCTTACACATACGAAGGTGCCCTGAGTGACCATCGCAACATTG
TCAGGGTTCACAGATGGCATGTTCATGACCCCAATCGTACCAAGTCAAAG
AAGCAACGAAGCTAA