Gcaud8725.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud8725.t1
Unique Name	Gcaud8725.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	389

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_61_length_58397_cov_4.831458	contig	NODE_61_length_58397_cov_4.831458:36167..37333 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	45157.CMN250CT
PFAMs	SRP54,SRP54_N
Max annot lvl	2759\|Eukaryota
KEGG ko	ko:K03110
KEGG TC	3.A.5.1,3.A.5.2,3.A.5.7
KEGG Pathway	ko02024,ko03060,ko03070,map02024,map03060,map03070
KEGG Module	M00335
GOs	GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0009507,GO:0009532,GO:0009534,GO:0009535,GO:0009536,GO:0009570,GO:0009579,GO:0016020,GO:0031976,GO:0031984,GO:0034357,GO:0042651,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044422,GO:0044424,GO:0044434,GO:0044435,GO:0044436,GO:0044444,GO:0044446,GO:0044464,GO:0055035
Evalue	7.36e-98
EggNOG OGs	COG0541@1\|root,KOG0780@2759\|Eukaryota
Description	7S RNA binding
COG category	U
BRITE	ko00000,ko00001,ko00002,ko02044

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud8725	Gcaud8725	Gracilaria caudata M_176_S67 male	gene	NODE_61_length_58397_cov_4.831458 36167..37333 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud8725.t1.start1	Gcaud8725.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_61_length_58397_cov_4.831458 36167..36169 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud8725.t1.CDS1	Gcaud8725.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_61_length_58397_cov_4.831458 36167..37333 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud8725.t1.exon1	Gcaud8725.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_61_length_58397_cov_4.831458 36167..37333 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud8725.t1.stop1	Gcaud8725.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_61_length_58397_cov_4.831458 37331..37333 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud8725.t1	Gcaud8725.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_61_length_58397_cov_4.831458 36167..37333 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_61_length_58397_cov_4.831458:36167..37333+
coding sequence from alignment at NODE_61_length_58397_cov_4.831458:36167..37333+

mRNA sequence

>Gcaud8725.t1 ID=Gcaud8725.t1|Name=Gcaud8725.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=389bp
MNVDSGFGFLPPLPCRRRISLSPLENRLKRIAVCDCKRPASYPVTRAVFD
FVKKAGEEQKKAFDALRQGKGLEYVRDKVQRDIEQVRKFNDGLAKSREKL
ARDLADVVRGGEIVELDETLEELEEVLIMSDLGVDTVEKILQDLREEARA
KRLQMKEDIKSNLKTSLLGILNRVHCAELIVADEKPTIYMVIGANGMGKT
TTIGKLATRLRNEGNRVLVAACDTFRAAAVDQLEEWVRRADADIVVPKPE
QKSPSGVLYSALERAFGEKYDYLIVDTSGRLHTNLNLMGELQKMVRVIAK
FKQEGPDETILVVDASIGRNAVAQAKTWKRDVGVSSLAVTKLDGTARAGF
VVSCVDELKIPVKLVGVGEQVDDLRDFDPELFIDGLVG*

spliced messenger RNA

>Gcaud8725.t1 ID=Gcaud8725.t1|Name=Gcaud8725.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1167bp|location=Sequence derived from alignment at NODE_61_length_58397_cov_4.831458:36167..37333+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAATGTGGATTCGGGTTTCGGTTTTCTTCCGCCTCTTCCGTGTCGAAG
AAGAATTTCTCTCTCGCCCTTGGAAAACAGGTTAAAACGCATAGCAGTCT
GTGACTGTAAACGTCCAGCTTCGTATCCCGTGACGCGAGCTGTCTTTGAC
TTCGTTAAAAAAGCAGGAGAGGAGCAGAAAAAAGCCTTCGACGCATTACG
GCAAGGAAAAGGTTTAGAATATGTCCGAGACAAGGTGCAACGAGATATTG
AGCAGGTTCGCAAGTTTAATGATGGACTGGCGAAATCGAGAGAGAAACTT
GCTCGAGATTTGGCTGATGTCGTAAGAGGTGGTGAGATAGTAGAACTCGA
TGAGACTCTGGAGGAATTGGAGGAGGTTCTCATCATGTCAGACCTAGGAG
TAGACACAGTTGAAAAAATTCTTCAGGATCTTCGGGAAGAGGCCCGGGCA
AAGCGACTCCAAATGAAAGAAGACATTAAGAGCAACCTAAAAACAAGTCT
CTTAGGCATCTTGAACAGAGTGCATTGCGCGGAGCTAATTGTTGCGGACG
AGAAACCAACTATATATATGGTCATCGGCGCCAACGGGATGGGTAAGACG
ACTACGATAGGCAAGCTTGCAACCCGTCTCAGAAATGAGGGGAATCGTGT
TCTAGTCGCTGCCTGCGATACCTTCCGTGCCGCAGCTGTTGATCAATTAG
AAGAGTGGGTTAGACGAGCTGACGCTGATATCGTGGTTCCAAAGCCGGAA
CAGAAAAGCCCATCAGGTGTGCTTTATAGTGCACTGGAGCGTGCCTTTGG
CGAGAAGTATGACTATCTCATTGTTGACACTAGCGGCAGATTGCATACCA
ATTTGAACCTTATGGGTGAGCTTCAGAAGATGGTGAGAGTCATTGCAAAG
TTTAAGCAGGAGGGCCCCGATGAGACCATATTAGTGGTGGATGCGTCTAT
TGGAAGAAATGCAGTTGCGCAAGCGAAGACTTGGAAGCGTGATGTGGGTG
TTTCTAGTCTGGCAGTGACCAAGCTCGACGGGACAGCCCGCGCTGGATTT
GTAGTATCTTGTGTGGATGAGTTGAAGATTCCAGTGAAGTTAGTAGGAGT
AGGAGAGCAGGTAGATGATCTTCGTGACTTTGACCCAGAACTGTTTATCG
ATGGGCTAGTTGGTTAA

protein sequence of Gcaud8725.t1

>Gcaud8725.t1 ID=Gcaud8725.t1|Name=Gcaud8725.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=389bp
MNVDSGFGFLPPLPCRRRISLSPLENRLKRIAVCDCKRPASYPVTRAVFD
FVKKAGEEQKKAFDALRQGKGLEYVRDKVQRDIEQVRKFNDGLAKSREKL
ARDLADVVRGGEIVELDETLEELEEVLIMSDLGVDTVEKILQDLREEARA
KRLQMKEDIKSNLKTSLLGILNRVHCAELIVADEKPTIYMVIGANGMGKT
TTIGKLATRLRNEGNRVLVAACDTFRAAAVDQLEEWVRRADADIVVPKPE
QKSPSGVLYSALERAFGEKYDYLIVDTSGRLHTNLNLMGELQKMVRVIAK
FKQEGPDETILVVDASIGRNAVAQAKTWKRDVGVSSLAVTKLDGTARAGF
VVSCVDELKIPVKLVGVGEQVDDLRDFDPELFIDGLVG*

mRNA from alignment at NODE_61_length_58397_cov_4.831458:36167..37333+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud8725.t1 ID=Gcaud8725.t1|Name=Gcaud8725.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1167bp|location=Sequence derived from alignment at NODE_61_length_58397_cov_4.831458:36167..37333+ (Gracilaria caudata M_176_S67 male)
ATGAATGTGGATTCGGGTTTCGGTTTTCTTCCGCCTCTTCCGTGTCGAAG
AAGAATTTCTCTCTCGCCCTTGGAAAACAGGTTAAAACGCATAGCAGTCT
GTGACTGTAAACGTCCAGCTTCGTATCCCGTGACGCGAGCTGTCTTTGAC
TTCGTTAAAAAAGCAGGAGAGGAGCAGAAAAAAGCCTTCGACGCATTACG
GCAAGGAAAAGGTTTAGAATATGTCCGAGACAAGGTGCAACGAGATATTG
AGCAGGTTCGCAAGTTTAATGATGGACTGGCGAAATCGAGAGAGAAACTT
GCTCGAGATTTGGCTGATGTCGTAAGAGGTGGTGAGATAGTAGAACTCGA
TGAGACTCTGGAGGAATTGGAGGAGGTTCTCATCATGTCAGACCTAGGAG
TAGACACAGTTGAAAAAATTCTTCAGGATCTTCGGGAAGAGGCCCGGGCA
AAGCGACTCCAAATGAAAGAAGACATTAAGAGCAACCTAAAAACAAGTCT
CTTAGGCATCTTGAACAGAGTGCATTGCGCGGAGCTAATTGTTGCGGACG
AGAAACCAACTATATATATGGTCATCGGCGCCAACGGGATGGGTAAGACG
ACTACGATAGGCAAGCTTGCAACCCGTCTCAGAAATGAGGGGAATCGTGT
TCTAGTCGCTGCCTGCGATACCTTCCGTGCCGCAGCTGTTGATCAATTAG
AAGAGTGGGTTAGACGAGCTGACGCTGATATCGTGGTTCCAAAGCCGGAA
CAGAAAAGCCCATCAGGTGTGCTTTATAGTGCACTGGAGCGTGCCTTTGG
CGAGAAGTATGACTATCTCATTGTTGACACTAGCGGCAGATTGCATACCA
ATTTGAACCTTATGGGTGAGCTTCAGAAGATGGTGAGAGTCATTGCAAAG
TTTAAGCAGGAGGGCCCCGATGAGACCATATTAGTGGTGGATGCGTCTAT
TGGAAGAAATGCAGTTGCGCAAGCGAAGACTTGGAAGCGTGATGTGGGTG
TTTCTAGTCTGGCAGTGACCAAGCTCGACGGGACAGCCCGCGCTGGATTT
GTAGTATCTTGTGTGGATGAGTTGAAGATTCCAGTGAAGTTAGTAGGAGT
AGGAGAGCAGGTAGATGATCTTCGTGACTTTGACCCAGAACTGTTTATCG
ATGGGCTAGTTGGTTAA

Coding sequence (CDS) from alignment at NODE_61_length_58397_cov_4.831458:36167..37333+

>Gcaud8725.t1 ID=Gcaud8725.t1|Name=Gcaud8725.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1167bp|location=Sequence derived from alignment at NODE_61_length_58397_cov_4.831458:36167..37333+ (Gracilaria caudata M_176_S67 male)
ATGAATGTGGATTCGGGTTTCGGTTTTCTTCCGCCTCTTCCGTGTCGAAG
AAGAATTTCTCTCTCGCCCTTGGAAAACAGGTTAAAACGCATAGCAGTCT
GTGACTGTAAACGTCCAGCTTCGTATCCCGTGACGCGAGCTGTCTTTGAC
TTCGTTAAAAAAGCAGGAGAGGAGCAGAAAAAAGCCTTCGACGCATTACG
GCAAGGAAAAGGTTTAGAATATGTCCGAGACAAGGTGCAACGAGATATTG
AGCAGGTTCGCAAGTTTAATGATGGACTGGCGAAATCGAGAGAGAAACTT
GCTCGAGATTTGGCTGATGTCGTAAGAGGTGGTGAGATAGTAGAACTCGA
TGAGACTCTGGAGGAATTGGAGGAGGTTCTCATCATGTCAGACCTAGGAG
TAGACACAGTTGAAAAAATTCTTCAGGATCTTCGGGAAGAGGCCCGGGCA
AAGCGACTCCAAATGAAAGAAGACATTAAGAGCAACCTAAAAACAAGTCT
CTTAGGCATCTTGAACAGAGTGCATTGCGCGGAGCTAATTGTTGCGGACG
AGAAACCAACTATATATATGGTCATCGGCGCCAACGGGATGGGTAAGACG
ACTACGATAGGCAAGCTTGCAACCCGTCTCAGAAATGAGGGGAATCGTGT
TCTAGTCGCTGCCTGCGATACCTTCCGTGCCGCAGCTGTTGATCAATTAG
AAGAGTGGGTTAGACGAGCTGACGCTGATATCGTGGTTCCAAAGCCGGAA
CAGAAAAGCCCATCAGGTGTGCTTTATAGTGCACTGGAGCGTGCCTTTGG
CGAGAAGTATGACTATCTCATTGTTGACACTAGCGGCAGATTGCATACCA
ATTTGAACCTTATGGGTGAGCTTCAGAAGATGGTGAGAGTCATTGCAAAG
TTTAAGCAGGAGGGCCCCGATGAGACCATATTAGTGGTGGATGCGTCTAT
TGGAAGAAATGCAGTTGCGCAAGCGAAGACTTGGAAGCGTGATGTGGGTG
TTTCTAGTCTGGCAGTGACCAAGCTCGACGGGACAGCCCGCGCTGGATTT
GTAGTATCTTGTGTGGATGAGTTGAAGATTCCAGTGAAGTTAGTAGGAGT
AGGAGAGCAGGTAGATGATCTTCGTGACTTTGACCCAGAACTGTTTATCG
ATGGGCTAGTTGGTTAA