Gcaud8724.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud8724.t1
Unique Name	Gcaud8724.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	347

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_61_length_58397_cov_4.831458	contig	NODE_61_length_58397_cov_4.831458:34340..35380 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud8724	Gcaud8724	Gracilaria caudata M_176_S67 male	gene	NODE_61_length_58397_cov_4.831458 34340..35380 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud8724.t1.stop1	Gcaud8724.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_61_length_58397_cov_4.831458 34340..34342 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud8724.t1.CDS1	Gcaud8724.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_61_length_58397_cov_4.831458 34340..35380 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud8724.t1.exon1	Gcaud8724.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_61_length_58397_cov_4.831458 34340..35380 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud8724.t1.start1	Gcaud8724.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_61_length_58397_cov_4.831458 35378..35380 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud8724.t1	Gcaud8724.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_61_length_58397_cov_4.831458 34340..35380 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_61_length_58397_cov_4.831458:34340..35380-
coding sequence from alignment at NODE_61_length_58397_cov_4.831458:34340..35380-

mRNA sequence

>Gcaud8724.t1 ID=Gcaud8724.t1|Name=Gcaud8724.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=347bp
MNPQKVKKKTIVDPSVWDSCEVGGKEAETRKDKVCSMRSSLFKKNEARTK
DALYGIQSAHDQEPIFRQPSEVEALDIPFQHETISLDYCEHGKANKKIWP
KDMFAVFHNALRSELRDLTILMNAIKKVGPQLRIGDFSVIRPWWQICSGV
LLDYLDAEQKYLIPWMEKAIKGEDALSRPSGQFFGQIEVKTKEMRNTIFE
TTSAFKQLCDIESGAVDGSSKVSNARRAVLLVGCFDTLVFQFGDYMNKQE
ELFPEILAAHYATEKKERDIIMGKMIKFYVTKGRVCESMLVLLTRWMTDT
KTQKSYRKALQEAHDCNYKSLQTRFEVTHAGFVLQYRVRAGLPEPR*

spliced messenger RNA

>Gcaud8724.t1 ID=Gcaud8724.t1|Name=Gcaud8724.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1041bp|location=Sequence derived from alignment at NODE_61_length_58397_cov_4.831458:34340..35380- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAATCCTCAAAAAGTCAAGAAGAAGACGATTGTTGATCCGTCCGTATG
GGACTCCTGCGAGGTTGGTGGAAAAGAGGCGGAGACGCGCAAGGACAAAG
TTTGTAGTATGCGTTCTTCTCTTTTTAAGAAGAACGAAGCAAGAACTAAA
GATGCGCTATACGGAATTCAAAGTGCGCATGACCAAGAACCAATCTTCAG
GCAGCCGTCGGAAGTTGAAGCTTTAGATATACCGTTTCAGCATGAGACAA
TATCTCTTGATTACTGTGAACACGGGAAGGCAAACAAGAAGATCTGGCCG
AAGGATATGTTTGCAGTTTTTCATAATGCTCTACGGTCCGAGCTAAGGGA
TTTAACTATATTGATGAACGCCATAAAGAAAGTTGGACCTCAGTTAAGGA
TTGGCGACTTTTCAGTCATTCGACCATGGTGGCAGATATGTTCTGGAGTT
CTTTTGGATTACCTGGATGCGGAGCAAAAGTACCTAATTCCGTGGATGGA
GAAGGCAATAAAGGGAGAGGATGCTCTTTCACGACCTTCTGGCCAATTCT
TCGGCCAAATTGAAGTCAAAACGAAGGAAATGCGAAACACAATCTTTGAG
ACTACCTCGGCCTTCAAACAGCTCTGTGATATCGAATCAGGTGCTGTTGA
TGGTTCTTCAAAGGTTTCGAATGCGCGGCGGGCTGTTTTATTAGTGGGAT
GCTTTGACACACTTGTCTTCCAGTTCGGGGATTACATGAACAAGCAAGAG
GAGCTCTTTCCAGAGATTCTAGCAGCACACTACGCCACTGAGAAAAAGGA
AAGGGATATTATCATGGGGAAGATGATCAAATTTTACGTGACGAAAGGAA
GGGTATGCGAAAGCATGTTGGTGCTCTTGACTAGGTGGATGACGGATACG
AAAACGCAGAAGAGCTACAGAAAAGCTCTCCAGGAGGCGCATGATTGCAA
CTACAAAAGCCTTCAAACGCGTTTCGAGGTCACACATGCTGGTTTCGTTC
TGCAGTATCGTGTCCGGGCTGGCTTACCTGAGCCTCGTTAA

protein sequence of Gcaud8724.t1

>Gcaud8724.t1 ID=Gcaud8724.t1|Name=Gcaud8724.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=347bp
MNPQKVKKKTIVDPSVWDSCEVGGKEAETRKDKVCSMRSSLFKKNEARTK
DALYGIQSAHDQEPIFRQPSEVEALDIPFQHETISLDYCEHGKANKKIWP
KDMFAVFHNALRSELRDLTILMNAIKKVGPQLRIGDFSVIRPWWQICSGV
LLDYLDAEQKYLIPWMEKAIKGEDALSRPSGQFFGQIEVKTKEMRNTIFE
TTSAFKQLCDIESGAVDGSSKVSNARRAVLLVGCFDTLVFQFGDYMNKQE
ELFPEILAAHYATEKKERDIIMGKMIKFYVTKGRVCESMLVLLTRWMTDT
KTQKSYRKALQEAHDCNYKSLQTRFEVTHAGFVLQYRVRAGLPEPR*

mRNA from alignment at NODE_61_length_58397_cov_4.831458:34340..35380-

Legend: polypeptideCDSexonstart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud8724.t1 ID=Gcaud8724.t1|Name=Gcaud8724.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1041bp|location=Sequence derived from alignment at NODE_61_length_58397_cov_4.831458:34340..35380- (Gracilaria caudata M_176_S67 male)
ATGAATCCTCAAAAAGTCAAGAAGAAGACGATTGTTGATCCGTCCGTATG
GGACTCCTGCGAGGTTGGTGGAAAAGAGGCGGAGACGCGCAAGGACAAAG
TTTGTAGTATGCGTTCTTCTCTTTTTAAGAAGAACGAAGCAAGAACTAAA
GATGCGCTATACGGAATTCAAAGTGCGCATGACCAAGAACCAATCTTCAG
GCAGCCGTCGGAAGTTGAAGCTTTAGATATACCGTTTCAGCATGAGACAA
TATCTCTTGATTACTGTGAACACGGGAAGGCAAACAAGAAGATCTGGCCG
AAGGATATGTTTGCAGTTTTTCATAATGCTCTACGGTCCGAGCTAAGGGA
TTTAACTATATTGATGAACGCCATAAAGAAAGTTGGACCTCAGTTAAGGA
TTGGCGACTTTTCAGTCATTCGACCATGGTGGCAGATATGTTCTGGAGTT
CTTTTGGATTACCTGGATGCGGAGCAAAAGTACCTAATTCCGTGGATGGA
GAAGGCAATAAAGGGAGAGGATGCTCTTTCACGACCTTCTGGCCAATTCT
TCGGCCAAATTGAAGTCAAAACGAAGGAAATGCGAAACACAATCTTTGAG
ACTACCTCGGCCTTCAAACAGCTCTGTGATATCGAATCAGGTGCTGTTGA
TGGTTCTTCAAAGGTTTCGAATGCGCGGCGGGCTGTTTTATTAGTGGGAT
GCTTTGACACACTTGTCTTCCAGTTCGGGGATTACATGAACAAGCAAGAG
GAGCTCTTTCCAGAGATTCTAGCAGCACACTACGCCACTGAGAAAAAGGA
AAGGGATATTATCATGGGGAAGATGATCAAATTTTACGTGACGAAAGGAA
GGGTATGCGAAAGCATGTTGGTGCTCTTGACTAGGTGGATGACGGATACG
AAAACGCAGAAGAGCTACAGAAAAGCTCTCCAGGAGGCGCATGATTGCAA
CTACAAAAGCCTTCAAACGCGTTTCGAGGTCACACATGCTGGTTTCGTTC
TGCAGTATCGTGTCCGGGCTGGCTTACCTGAGCCTCGTTAA

Coding sequence (CDS) from alignment at NODE_61_length_58397_cov_4.831458:34340..35380-

>Gcaud8724.t1 ID=Gcaud8724.t1|Name=Gcaud8724.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1041bp|location=Sequence derived from alignment at NODE_61_length_58397_cov_4.831458:34340..35380- (Gracilaria caudata M_176_S67 male)
ATGAATCCTCAAAAAGTCAAGAAGAAGACGATTGTTGATCCGTCCGTATG
GGACTCCTGCGAGGTTGGTGGAAAAGAGGCGGAGACGCGCAAGGACAAAG
TTTGTAGTATGCGTTCTTCTCTTTTTAAGAAGAACGAAGCAAGAACTAAA
GATGCGCTATACGGAATTCAAAGTGCGCATGACCAAGAACCAATCTTCAG
GCAGCCGTCGGAAGTTGAAGCTTTAGATATACCGTTTCAGCATGAGACAA
TATCTCTTGATTACTGTGAACACGGGAAGGCAAACAAGAAGATCTGGCCG
AAGGATATGTTTGCAGTTTTTCATAATGCTCTACGGTCCGAGCTAAGGGA
TTTAACTATATTGATGAACGCCATAAAGAAAGTTGGACCTCAGTTAAGGA
TTGGCGACTTTTCAGTCATTCGACCATGGTGGCAGATATGTTCTGGAGTT
CTTTTGGATTACCTGGATGCGGAGCAAAAGTACCTAATTCCGTGGATGGA
GAAGGCAATAAAGGGAGAGGATGCTCTTTCACGACCTTCTGGCCAATTCT
TCGGCCAAATTGAAGTCAAAACGAAGGAAATGCGAAACACAATCTTTGAG
ACTACCTCGGCCTTCAAACAGCTCTGTGATATCGAATCAGGTGCTGTTGA
TGGTTCTTCAAAGGTTTCGAATGCGCGGCGGGCTGTTTTATTAGTGGGAT
GCTTTGACACACTTGTCTTCCAGTTCGGGGATTACATGAACAAGCAAGAG
GAGCTCTTTCCAGAGATTCTAGCAGCACACTACGCCACTGAGAAAAAGGA
AAGGGATATTATCATGGGGAAGATGATCAAATTTTACGTGACGAAAGGAA
GGGTATGCGAAAGCATGTTGGTGCTCTTGACTAGGTGGATGACGGATACG
AAAACGCAGAAGAGCTACAGAAAAGCTCTCCAGGAGGCGCATGATTGCAA
CTACAAAAGCCTTCAAACGCGTTTCGAGGTCACACATGCTGGTTTCGTTC
TGCAGTATCGTGTCCGGGCTGGCTTACCTGAGCCTCGTTAA