Gcaud8722.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud8722.t1
Unique Name	Gcaud8722.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	435

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_61_length_58397_cov_4.831458	contig	NODE_61_length_58397_cov_4.831458:31682..32986 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	28532.XP_010526468.1
PFAMs	AAA
Max annot lvl	35493\|Streptophyta
KEGG ko	ko:K03062
KEGG Pathway	ko03050,ko05165,ko05169,ko05203,map03050,map05165,map05169,map05203
KEGG Module	M00341
GOs	GO:0000003,GO:0000502,GO:0002376,GO:0003674,GO:0003824,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005829,GO:0005838,GO:0005886,GO:0006355,GO:0006357,GO:0006508,GO:0006511,GO:0006807,GO:0006950,GO:0006952,GO:0006955,GO:0007275,GO:0007276,GO:0007292,GO:0008134,GO:0008150,GO:0008152,GO:0008540,GO:0009056,GO:0009057,GO:0009266,GO:0009408,GO:0009628,GO:0009653,GO:0009791,GO:0009888,GO:0009889,GO:0009891,GO:0009893,GO:0009894,GO:0009896,GO:0009933,GO:0009965,GO:0009987,GO:0010015,GO:0010016,GO:0010033,GO:0010035,GO:0010038,GO:0010073,GO:0010074,GO:0010078,GO:0010101,GO:0010102,GO:0010243,GO:0010311,GO:0010468,GO:0010498,GO:0010556,GO:0010557,GO:0010604,GO:0010628,GO:0016020,GO:0016043,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017025,GO:0017111,GO:0019219,GO:0019222,GO:0019538,GO:0019827,GO:0019941,GO:0019953,GO:0022414,GO:0022607,GO:0022622,GO:0022624,GO:0030162,GO:0030163,GO:0030433,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0031329,GO:0031331,GO:0031334,GO:0031595,GO:0031597,GO:0031974,GO:0031981,GO:0032268,GO:0032270,GO:0032501,GO:0032502,GO:0032504,GO:0032991,GO:0033554,GO:0034622,GO:0034976,GO:0035266,GO:0035966,GO:0036402,GO:0036503,GO:0040007,GO:0042176,GO:0042221,GO:0042623,GO:0043161,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043248,GO:0043254,GO:0043632,GO:0043933,GO:0044085,GO:0044087,GO:0044089,GO:0044237,GO:0044238,GO:0044248,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0044703,GO:0045087,GO:0045732,GO:0045862,GO:0045893,GO:0045898,GO:0045899,GO:0045935,GO:0045944,GO:0046686,GO:0048232,GO:0048364,GO:0048366,GO:0048367,GO:0048507,GO:0048518,GO:0048522,GO:0048527,GO:0048528,GO:0048532,GO:0048589,GO:0048609,GO:0048646,GO:0048731,GO:0048827,GO:0048829,GO:0048856,GO:0050789,GO:0050794,GO:0050896,GO:0051128,GO:0051130,GO:0051171,GO:0051173,GO:0051246,GO:0051247,GO:0051252,GO:0051254,GO:0051603,GO:0051704,GO:0051716,GO:0051788,GO:0060255,GO:0060260,GO:0060261,GO:0060968,GO:0061136,GO:0065003,GO:0065007,GO:0070013,GO:0071704,GO:0071840,GO:0071944,GO:0080090,GO:0090351,GO:0090696,GO:0090697,GO:0090698,GO:0098727,GO:0099402,GO:1901564,GO:1901565,GO:1901575,GO:1901698,GO:1901800,GO:1902494,GO:1902680,GO:1903050,GO:1903052,GO:1903362,GO:1903364,GO:1903506,GO:1903508,GO:1905368,GO:1905369,GO:1905392,GO:1905393,GO:2000112,GO:2000142,GO:2000144,GO:2001141
Evalue	6.68e-255
EggNOG OGs	COG0554@1\|root,KOG0726@2759\|Eukaryota,37NGE@33090\|Viridiplantae,3G8FW@35493\|Streptophyta,3HT42@3699\|Brassicales
Description	26S proteasome regulatory subunit 4 homolog
COG category	O
BRITE	ko00000,ko00001,ko00002,ko03051

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud8722	Gcaud8722	Gracilaria caudata M_176_S67 male	gene	NODE_61_length_58397_cov_4.831458 31682..32986 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud8722.t1.stop1	Gcaud8722.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_61_length_58397_cov_4.831458 31682..31684 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud8722.t1.CDS1	Gcaud8722.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_61_length_58397_cov_4.831458 31682..32986 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud8722.t1.exon1	Gcaud8722.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_61_length_58397_cov_4.831458 31682..32986 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud8722.t1.start1	Gcaud8722.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_61_length_58397_cov_4.831458 32984..32986 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud8722.t1	Gcaud8722.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_61_length_58397_cov_4.831458 31682..32986 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_61_length_58397_cov_4.831458:31682..32986-
coding sequence from alignment at NODE_61_length_58397_cov_4.831458:31682..32986-

mRNA sequence

>Gcaud8722.t1 ID=Gcaud8722.t1|Name=Gcaud8722.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=435bp
MPPGGPPGGNQGDKKHKKYEPPPAPTRIGRKKKKRGPEVAAKLPTITPNA
KCRLRLLKLERVKDYLLMEEEFVTNQERYKPREERTEEDRLKVEDIRGTP
MSVGTLEEIIDDDHAIVSSSVGPENYVYITSFVDKDQLEPGSSVLLHQKV
LSVVGMLADDADPMVSVMKVDKAPLESYADIGGLESQIQEIKEAVELPLT
HPELYEDIGIKPPKGVILYGEPGTGKTLLAKAVANSTSATFLRVVGSELI
QKYLGDGPKLVRELFRVAEDMAPSIVFIDEIDAVGTKRYDTTSGGEREIQ
RTMLELLNQLDGFDSRGDVKVLLATNRIETLDPALLRPGRIDRKIEFPLP
DEKTKRRIFAIHTGRMTLAEDVNLEEFVMSKDELSGADIKAICTEAGLMA
LRERRMQVTHSDFKKAKENVMYKKNQGVPEGLYL*

spliced messenger RNA

>Gcaud8722.t1 ID=Gcaud8722.t1|Name=Gcaud8722.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1305bp|location=Sequence derived from alignment at NODE_61_length_58397_cov_4.831458:31682..32986- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCCTCCAGGCGGTCCGCCTGGTGGAAACCAGGGGGACAAGAAGCATAA
GAAGTACGAGCCTCCGCCAGCGCCTACCCGAATTGGACGCAAGAAGAAGA
AGCGTGGGCCAGAAGTGGCGGCAAAACTGCCAACGATCACTCCTAATGCG
AAGTGCAGACTGCGTTTGCTTAAACTGGAGCGCGTGAAAGACTATCTCTT
AATGGAAGAAGAGTTTGTGACAAATCAAGAGCGGTACAAACCTCGTGAGG
AGCGCACAGAAGAAGATCGACTGAAGGTTGAAGATATCCGCGGAACTCCT
ATGAGTGTGGGAACTCTCGAGGAGATTATCGACGACGATCACGCCATTGT
TTCATCCTCAGTAGGACCGGAAAACTACGTGTATATAACATCGTTTGTTG
ACAAGGATCAGTTGGAACCTGGCAGCTCTGTACTTCTTCATCAAAAAGTG
CTCAGTGTTGTCGGTATGCTGGCAGATGATGCGGATCCGATGGTGAGCGT
AATGAAAGTTGACAAGGCTCCCCTTGAGAGTTATGCGGACATTGGTGGAC
TCGAGAGTCAGATCCAGGAAATCAAAGAGGCCGTTGAACTCCCTCTCACA
CATCCAGAACTTTACGAGGATATTGGTATCAAGCCACCTAAAGGTGTCAT
TCTTTACGGAGAACCTGGCACTGGAAAGACTCTACTTGCCAAAGCTGTTG
CAAATAGTACGTCAGCCACATTTTTGCGCGTTGTAGGGTCGGAACTGATC
CAAAAATATCTTGGAGATGGTCCTAAACTTGTCCGGGAGTTATTCCGCGT
CGCCGAGGATATGGCTCCGTCGATTGTCTTCATCGATGAAATAGATGCGG
TCGGTACGAAGCGATATGACACTACTTCGGGTGGCGAGCGTGAAATTCAG
CGAACGATGTTGGAGCTTCTGAATCAGCTTGATGGGTTTGACAGTCGCGG
TGATGTCAAGGTTCTGCTCGCGACCAATCGAATCGAAACGCTAGACCCCG
CGCTATTGCGTCCAGGCCGTATTGATCGAAAGATAGAGTTTCCCCTTCCG
GACGAGAAAACTAAGCGAAGAATCTTTGCTATTCACACAGGACGGATGAC
GTTGGCTGAGGACGTAAATCTGGAAGAGTTTGTGATGAGCAAGGATGAAT
TAAGCGGTGCAGATATAAAAGCTATCTGTACTGAAGCTGGTCTTATGGCG
CTTCGGGAACGAAGAATGCAGGTAACTCATTCAGATTTCAAGAAAGCAAA
GGAAAACGTGATGTACAAGAAGAATCAAGGAGTCCCAGAAGGGTTGTATC
TGTAG

protein sequence of Gcaud8722.t1

>Gcaud8722.t1 ID=Gcaud8722.t1|Name=Gcaud8722.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=435bp
MPPGGPPGGNQGDKKHKKYEPPPAPTRIGRKKKKRGPEVAAKLPTITPNA
KCRLRLLKLERVKDYLLMEEEFVTNQERYKPREERTEEDRLKVEDIRGTP
MSVGTLEEIIDDDHAIVSSSVGPENYVYITSFVDKDQLEPGSSVLLHQKV
LSVVGMLADDADPMVSVMKVDKAPLESYADIGGLESQIQEIKEAVELPLT
HPELYEDIGIKPPKGVILYGEPGTGKTLLAKAVANSTSATFLRVVGSELI
QKYLGDGPKLVRELFRVAEDMAPSIVFIDEIDAVGTKRYDTTSGGEREIQ
RTMLELLNQLDGFDSRGDVKVLLATNRIETLDPALLRPGRIDRKIEFPLP
DEKTKRRIFAIHTGRMTLAEDVNLEEFVMSKDELSGADIKAICTEAGLMA
LRERRMQVTHSDFKKAKENVMYKKNQGVPEGLYL*

mRNA from alignment at NODE_61_length_58397_cov_4.831458:31682..32986-

Legend: polypeptideCDSexonstart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud8722.t1 ID=Gcaud8722.t1|Name=Gcaud8722.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1305bp|location=Sequence derived from alignment at NODE_61_length_58397_cov_4.831458:31682..32986- (Gracilaria caudata M_176_S67 male)
ATGCCTCCAGGCGGTCCGCCTGGTGGAAACCAGGGGGACAAGAAGCATAA
GAAGTACGAGCCTCCGCCAGCGCCTACCCGAATTGGACGCAAGAAGAAGA
AGCGTGGGCCAGAAGTGGCGGCAAAACTGCCAACGATCACTCCTAATGCG
AAGTGCAGACTGCGTTTGCTTAAACTGGAGCGCGTGAAAGACTATCTCTT
AATGGAAGAAGAGTTTGTGACAAATCAAGAGCGGTACAAACCTCGTGAGG
AGCGCACAGAAGAAGATCGACTGAAGGTTGAAGATATCCGCGGAACTCCT
ATGAGTGTGGGAACTCTCGAGGAGATTATCGACGACGATCACGCCATTGT
TTCATCCTCAGTAGGACCGGAAAACTACGTGTATATAACATCGTTTGTTG
ACAAGGATCAGTTGGAACCTGGCAGCTCTGTACTTCTTCATCAAAAAGTG
CTCAGTGTTGTCGGTATGCTGGCAGATGATGCGGATCCGATGGTGAGCGT
AATGAAAGTTGACAAGGCTCCCCTTGAGAGTTATGCGGACATTGGTGGAC
TCGAGAGTCAGATCCAGGAAATCAAAGAGGCCGTTGAACTCCCTCTCACA
CATCCAGAACTTTACGAGGATATTGGTATCAAGCCACCTAAAGGTGTCAT
TCTTTACGGAGAACCTGGCACTGGAAAGACTCTACTTGCCAAAGCTGTTG
CAAATAGTACGTCAGCCACATTTTTGCGCGTTGTAGGGTCGGAACTGATC
CAAAAATATCTTGGAGATGGTCCTAAACTTGTCCGGGAGTTATTCCGCGT
CGCCGAGGATATGGCTCCGTCGATTGTCTTCATCGATGAAATAGATGCGG
TCGGTACGAAGCGATATGACACTACTTCGGGTGGCGAGCGTGAAATTCAG
CGAACGATGTTGGAGCTTCTGAATCAGCTTGATGGGTTTGACAGTCGCGG
TGATGTCAAGGTTCTGCTCGCGACCAATCGAATCGAAACGCTAGACCCCG
CGCTATTGCGTCCAGGCCGTATTGATCGAAAGATAGAGTTTCCCCTTCCG
GACGAGAAAACTAAGCGAAGAATCTTTGCTATTCACACAGGACGGATGAC
GTTGGCTGAGGACGTAAATCTGGAAGAGTTTGTGATGAGCAAGGATGAAT
TAAGCGGTGCAGATATAAAAGCTATCTGTACTGAAGCTGGTCTTATGGCG
CTTCGGGAACGAAGAATGCAGGTAACTCATTCAGATTTCAAGAAAGCAAA
GGAAAACGTGATGTACAAGAAGAATCAAGGAGTCCCAGAAGGGTTGTATC
TGTAG

Coding sequence (CDS) from alignment at NODE_61_length_58397_cov_4.831458:31682..32986-

>Gcaud8722.t1 ID=Gcaud8722.t1|Name=Gcaud8722.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1305bp|location=Sequence derived from alignment at NODE_61_length_58397_cov_4.831458:31682..32986- (Gracilaria caudata M_176_S67 male)
ATGCCTCCAGGCGGTCCGCCTGGTGGAAACCAGGGGGACAAGAAGCATAA
GAAGTACGAGCCTCCGCCAGCGCCTACCCGAATTGGACGCAAGAAGAAGA
AGCGTGGGCCAGAAGTGGCGGCAAAACTGCCAACGATCACTCCTAATGCG
AAGTGCAGACTGCGTTTGCTTAAACTGGAGCGCGTGAAAGACTATCTCTT
AATGGAAGAAGAGTTTGTGACAAATCAAGAGCGGTACAAACCTCGTGAGG
AGCGCACAGAAGAAGATCGACTGAAGGTTGAAGATATCCGCGGAACTCCT
ATGAGTGTGGGAACTCTCGAGGAGATTATCGACGACGATCACGCCATTGT
TTCATCCTCAGTAGGACCGGAAAACTACGTGTATATAACATCGTTTGTTG
ACAAGGATCAGTTGGAACCTGGCAGCTCTGTACTTCTTCATCAAAAAGTG
CTCAGTGTTGTCGGTATGCTGGCAGATGATGCGGATCCGATGGTGAGCGT
AATGAAAGTTGACAAGGCTCCCCTTGAGAGTTATGCGGACATTGGTGGAC
TCGAGAGTCAGATCCAGGAAATCAAAGAGGCCGTTGAACTCCCTCTCACA
CATCCAGAACTTTACGAGGATATTGGTATCAAGCCACCTAAAGGTGTCAT
TCTTTACGGAGAACCTGGCACTGGAAAGACTCTACTTGCCAAAGCTGTTG
CAAATAGTACGTCAGCCACATTTTTGCGCGTTGTAGGGTCGGAACTGATC
CAAAAATATCTTGGAGATGGTCCTAAACTTGTCCGGGAGTTATTCCGCGT
CGCCGAGGATATGGCTCCGTCGATTGTCTTCATCGATGAAATAGATGCGG
TCGGTACGAAGCGATATGACACTACTTCGGGTGGCGAGCGTGAAATTCAG
CGAACGATGTTGGAGCTTCTGAATCAGCTTGATGGGTTTGACAGTCGCGG
TGATGTCAAGGTTCTGCTCGCGACCAATCGAATCGAAACGCTAGACCCCG
CGCTATTGCGTCCAGGCCGTATTGATCGAAAGATAGAGTTTCCCCTTCCG
GACGAGAAAACTAAGCGAAGAATCTTTGCTATTCACACAGGACGGATGAC
GTTGGCTGAGGACGTAAATCTGGAAGAGTTTGTGATGAGCAAGGATGAAT
TAAGCGGTGCAGATATAAAAGCTATCTGTACTGAAGCTGGTCTTATGGCG
CTTCGGGAACGAAGAATGCAGGTAACTCATTCAGATTTCAAGAAAGCAAA
GGAAAACGTGATGTACAAGAAGAATCAAGGAGTCCCAGAAGGGTTGTATC
TGTAG