Gcaud8625.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud8625.t1
Unique Name	Gcaud8625.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	433

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_901_length_16318_cov_4.606212	contig	NODE_901_length_16318_cov_4.606212:9632..11059 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud8625	Gcaud8625	Gracilaria caudata M_176_S67 male	gene	NODE_901_length_16318_cov_4.606212 9632..11059 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud8625.t1	Gcaud8625.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_901_length_16318_cov_4.606212 9632..11059 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud8625.t1.start1	Gcaud8625.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_901_length_16318_cov_4.606212 9632..9634 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud8625.t1.CDS1	Gcaud8625.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_901_length_16318_cov_4.606212 9632..10439 +
Gcaud8625.t1.CDS2	Gcaud8625.t1.CDS2	Gracilaria caudata M_176_S67 male	CDS	NODE_901_length_16318_cov_4.606212 10569..11059 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud8625.t1.exon1	Gcaud8625.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_901_length_16318_cov_4.606212 9632..10439 +
Gcaud8625.t1.exon2	Gcaud8625.t1.exon2	Gracilaria caudata M_176_S67 male	exon	NODE_901_length_16318_cov_4.606212 10569..11059 +

The following intron feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud8625.t1.intron1	Gcaud8625.t1.intron1	Gracilaria caudata M_176_S67 male	intron	NODE_901_length_16318_cov_4.606212 10440..10568 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud8625.t1.stop1	Gcaud8625.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_901_length_16318_cov_4.606212 11057..11059 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_901_length_16318_cov_4.606212:9632..11059+
coding sequence from alignment at NODE_901_length_16318_cov_4.606212:9632..11059+

mRNA sequence

>Gcaud8625.t1 ID=Gcaud8625.t1|Name=Gcaud8625.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=433bp
MLTLPFDTGIIAALIFLIFELLVIPLLMHFTSTLASFLLTRRAQTGRQIQ
VRTIKYPIWSEGLLLRQSSHILLFALRIVCIALPVYLETRLESRSERPLV
SRNLQHAFVVDPREHDITKLSNDKGLALDLLPRELFARCASLDDEGWLHA
RVVNVTLVDEDRRRIRCVKHTEQVIYRNIERLPPFVHPSSSEVRGYVDDT
PLYQPNLTVKVQMDKGPFRAFPWWVGSEVEPEEQFAQVNSVTVEDTNGMQ
CFFWGSPLPASVTSPGTFRISTQFTVSTTFKYLGSLQFKDRVWIHGGHLI
RRLNVPAILTRSMFQAVLQQLLYERATNVSISLPGDEEKHSVQLDDVVVI
LGSVEVGVVILFALLLALYSRYKKKDIQRVNTVDGLSQCWAWDRAATYGT
ELQSYIVLRLRRTMGPVWGGDEANAYEHVELR*

spliced messenger RNA

>Gcaud8625.t1 ID=Gcaud8625.t1|Name=Gcaud8625.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1299bp|location=Sequence derived from alignment at NODE_901_length_16318_cov_4.606212:9632..11059+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCTCACCCTTCCCTTCGACACCGGCATAATCGCCGCTCTCATCTTTCT
CATCTTTGAGCTTCTCGTCATCCCGCTTCTGATGCACTTCACGTCCACCC
TTGCCTCCTTCCTGCTCACAAGACGCGCGCAGACGGGAAGGCAAATCCAG
GTACGCACCATCAAATACCCCATATGGAGCGAAGGCCTCTTGCTTCGCCA
ATCCTCCCATATCCTTCTCTTCGCGCTGCGCATCGTTTGCATTGCCCTCC
CTGTCTACCTCGAGACAAGGCTGGAATCACGCTCCGAACGCCCGCTCGTG
TCAAGGAATCTGCAGCACGCTTTCGTCGTCGACCCCAGGGAACACGATAT
TACTAAGCTCTCCAATGATAAGGGTCTGGCACTCGATTTGCTCCCCAGAG
AGTTGTTCGCAAGATGTGCGTCGCTGGATGATGAAGGATGGCTGCATGCT
AGAGTGGTGAACGTGACGTTGGTGGATGAGGATCGTCGCAGGATACGGTG
CGTGAAACACACCGAACAAGTTATTTATCGAAATATCGAACGCCTTCCGC
CCTTTGTGCACCCTTCATCTTCCGAAGTAAGAGGCTATGTTGATGACACT
CCTTTATATCAACCAAATCTCACCGTCAAAGTGCAAATGGACAAAGGTCC
CTTTCGCGCATTTCCATGGTGGGTGGGATCGGAAGTTGAGCCGGAGGAAC
AATTCGCGCAAGTGAATAGTGTGACCGTTGAAGATACAAACGGGATGCAG
TGTTTCTTCTGGGGATCCCCATTGCCCGCAAGTGTAACGTCTCCTGGCAC
CTTTAGAATTTCCACGCAATTTACCGTGTCTACCACATTCAAGTATCTCG
GAAGTTTGCAGTTCAAGGATAGGGTATGGATACATGGCGGACATTTAATT
CGACGTCTCAATGTCCCAGCCATATTGACACGATCAATGTTCCAAGCCGT
TCTGCAACAGCTTTTGTACGAAAGAGCTACCAATGTAAGCATAAGCTTGC
CCGGAGACGAAGAGAAGCATTCAGTACAGCTTGATGACGTGGTTGTGATC
CTTGGCAGTGTGGAAGTGGGTGTGGTGATATTATTTGCGCTGTTGTTGGC
GCTCTATTCGCGATACAAAAAGAAAGATATTCAACGTGTGAATACCGTGG
ACGGGCTTTCTCAGTGCTGGGCATGGGACAGGGCCGCGACGTATGGAACA
GAGTTACAAAGCTACATTGTACTAAGGCTGAGGAGAACAATGGGACCTGT
GTGGGGAGGGGATGAGGCAAACGCTTATGAGCATGTGGAGCTGAGATAG

protein sequence of Gcaud8625.t1

>Gcaud8625.t1 ID=Gcaud8625.t1|Name=Gcaud8625.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=433bp
MLTLPFDTGIIAALIFLIFELLVIPLLMHFTSTLASFLLTRRAQTGRQIQ
VRTIKYPIWSEGLLLRQSSHILLFALRIVCIALPVYLETRLESRSERPLV
SRNLQHAFVVDPREHDITKLSNDKGLALDLLPRELFARCASLDDEGWLHA
RVVNVTLVDEDRRRIRCVKHTEQVIYRNIERLPPFVHPSSSEVRGYVDDT
PLYQPNLTVKVQMDKGPFRAFPWWVGSEVEPEEQFAQVNSVTVEDTNGMQ
CFFWGSPLPASVTSPGTFRISTQFTVSTTFKYLGSLQFKDRVWIHGGHLI
RRLNVPAILTRSMFQAVLQQLLYERATNVSISLPGDEEKHSVQLDDVVVI
LGSVEVGVVILFALLLALYSRYKKKDIQRVNTVDGLSQCWAWDRAATYGT
ELQSYIVLRLRRTMGPVWGGDEANAYEHVELR*

mRNA from alignment at NODE_901_length_16318_cov_4.606212:9632..11059+

Legend: polypeptidestart_codonCDSexonintronstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud8625.t1 ID=Gcaud8625.t1|Name=Gcaud8625.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1428bp|location=Sequence derived from alignment at NODE_901_length_16318_cov_4.606212:9632..11059+ (Gracilaria caudata M_176_S67 male)
ATGCTCACCCTTCCCTTCGACACCGGCATAATCGCCGCTCTCATCTTTCT
CATCTTTGAGCTTCTCGTCATCCCGCTTCTGATGCACTTCACGTCCACCC
TTGCCTCCTTCCTGCTCACAAGACGCGCGCAGACGGGAAGGCAAATCCAG
GTACGCACCATCAAATACCCCATATGGAGCGAAGGCCTCTTGCTTCGCCA
ATCCTCCCATATCCTTCTCTTCGCGCTGCGCATCGTTTGCATTGCCCTCC
CTGTCTACCTCGAGACAAGGCTGGAATCACGCTCCGAACGCCCGCTCGTG
TCAAGGAATCTGCAGCACGCTTTCGTCGTCGACCCCAGGGAACACGATAT
TACTAAGCTCTCCAATGATAAGGGTCTGGCACTCGATTTGCTCCCCAGAG
AGTTGTTCGCAAGATGTGCGTCGCTGGATGATGAAGGATGGCTGCATGCT
AGAGTGGTGAACGTGACGTTGGTGGATGAGGATCGTCGCAGGATACGGTG
CGTGAAACACACCGAACAAGTTATTTATCGAAATATCGAACGCCTTCCGC
CCTTTGTGCACCCTTCATCTTCCGAAGTAAGAGGCTATGTTGATGACACT
CCTTTATATCAACCAAATCTCACCGTCAAAGTGCAAATGGACAAAGGTCC
CTTTCGCGCATTTCCATGGTGGGTGGGATCGGAAGTTGAGCCGGAGGAAC
AATTCGCGCAAGTGAATAGTGTGACCGTTGAAGATACAAACGGGATGCAG
TGTTTCTTCTGGGGATCCCCATTGCCCGCAAGTGTAACGTCTCCTGGCAC
CTTTAGAAGTAAGTTAGATTCTTTCGTTTGCCAGAATGAAACTGGAAACT
TCGTGGATTACTATGGTGTGTCTACAAGAGGTCTTCTGAAAAGCAACGAA
AGAGTTCTGCGGGGAAACGGAAGTAACCCAAGTATAGTTTCCACGCAATT
TACCGTGTCTACCACATTCAAGTATCTCGGAAGTTTGCAGTTCAAGGATA
GGGTATGGATACATGGCGGACATTTAATTCGACGTCTCAATGTCCCAGCC
ATATTGACACGATCAATGTTCCAAGCCGTTCTGCAACAGCTTTTGTACGA
AAGAGCTACCAATGTAAGCATAAGCTTGCCCGGAGACGAAGAGAAGCATT
CAGTACAGCTTGATGACGTGGTTGTGATCCTTGGCAGTGTGGAAGTGGGT
GTGGTGATATTATTTGCGCTGTTGTTGGCGCTCTATTCGCGATACAAAAA
GAAAGATATTCAACGTGTGAATACCGTGGACGGGCTTTCTCAGTGCTGGG
CATGGGACAGGGCCGCGACGTATGGAACAGAGTTACAAAGCTACATTGTA
CTAAGGCTGAGGAGAACAATGGGACCTGTGTGGGGAGGGGATGAGGCAAA
CGCTTATGAGCATGTGGAGCTGAGATAG

Coding sequence (CDS) from alignment at NODE_901_length_16318_cov_4.606212:9632..11059+

>Gcaud8625.t1 ID=Gcaud8625.t1|Name=Gcaud8625.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1299bp|location=Sequence derived from alignment at NODE_901_length_16318_cov_4.606212:9632..11059+ (Gracilaria caudata M_176_S67 male)
ATGCTCACCCTTCCCTTCGACACCGGCATAATCGCCGCTCTCATCTTTCT
CATCTTTGAGCTTCTCGTCATCCCGCTTCTGATGCACTTCACGTCCACCC
TTGCCTCCTTCCTGCTCACAAGACGCGCGCAGACGGGAAGGCAAATCCAG
GTACGCACCATCAAATACCCCATATGGAGCGAAGGCCTCTTGCTTCGCCA
ATCCTCCCATATCCTTCTCTTCGCGCTGCGCATCGTTTGCATTGCCCTCC
CTGTCTACCTCGAGACAAGGCTGGAATCACGCTCCGAACGCCCGCTCGTG
TCAAGGAATCTGCAGCACGCTTTCGTCGTCGACCCCAGGGAACACGATAT
TACTAAGCTCTCCAATGATAAGGGTCTGGCACTCGATTTGCTCCCCAGAG
AGTTGTTCGCAAGATGTGCGTCGCTGGATGATGAAGGATGGCTGCATGCT
AGAGTGGTGAACGTGACGTTGGTGGATGAGGATCGTCGCAGGATACGGTG
CGTGAAACACACCGAACAAGTTATTTATCGAAATATCGAACGCCTTCCGC
CCTTTGTGCACCCTTCATCTTCCGAAGTAAGAGGCTATGTTGATGACACT
CCTTTATATCAACCAAATCTCACCGTCAAAGTGCAAATGGACAAAGGTCC
CTTTCGCGCATTTCCATGGTGGGTGGGATCGGAAGTTGAGCCGGAGGAAC
AATTCGCGCAAGTGAATAGTGTGACCGTTGAAGATACAAACGGGATGCAG
TGTTTCTTCTGGGGATCCCCATTGCCCGCAAGTGTAACGTCTCCTGGCAC
CTTTAGAATTTCCACGCAATTTACCGTGTCTACCACATTCAAGTATCTCG
GAAGTTTGCAGTTCAAGGATAGGGTATGGATACATGGCGGACATTTAATT
CGACGTCTCAATGTCCCAGCCATATTGACACGATCAATGTTCCAAGCCGT
TCTGCAACAGCTTTTGTACGAAAGAGCTACCAATGTAAGCATAAGCTTGC
CCGGAGACGAAGAGAAGCATTCAGTACAGCTTGATGACGTGGTTGTGATC
CTTGGCAGTGTGGAAGTGGGTGTGGTGATATTATTTGCGCTGTTGTTGGC
GCTCTATTCGCGATACAAAAAGAAAGATATTCAACGTGTGAATACCGTGG
ACGGGCTTTCTCAGTGCTGGGCATGGGACAGGGCCGCGACGTATGGAACA
GAGTTACAAAGCTACATTGTACTAAGGCTGAGGAGAACAATGGGACCTGT
GTGGGGAGGGGATGAGGCAAACGCTTATGAGCATGTGGAGCTGAGATAG