Gcaud8620.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud8620.t1
Unique Name	Gcaud8620.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	334

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_329_length_29763_cov_4.543981	contig	NODE_329_length_29763_cov_4.543981:19949..20950 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud8620	Gcaud8620	Gracilaria caudata M_176_S67 male	gene	NODE_329_length_29763_cov_4.543981 19949..20950 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud8620.t1.stop1	Gcaud8620.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_329_length_29763_cov_4.543981 19949..19951 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud8620.t1.CDS1	Gcaud8620.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_329_length_29763_cov_4.543981 19949..20950 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud8620.t1.exon1	Gcaud8620.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_329_length_29763_cov_4.543981 19949..20950 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud8620.t1.start1	Gcaud8620.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_329_length_29763_cov_4.543981 20948..20950 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud8620.t1	Gcaud8620.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_329_length_29763_cov_4.543981 19949..20950 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_329_length_29763_cov_4.543981:19949..20950-
coding sequence from alignment at NODE_329_length_29763_cov_4.543981:19949..20950-

mRNA sequence

>Gcaud8620.t1 ID=Gcaud8620.t1|Name=Gcaud8620.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=334bp
MTEREVVDACLKVVSNRCRNLRKAIDRAKTWEQAAASGQELNPEQVESVK
SCVKKEALLAELQEILKKQTTIVEPSERAEQKQQTSQRSAKAVRAKGKRS
KASQGQGESHTSSADGTQRDDDSDISNTAQEKNRSHGTTDDSSEVSPSQY
PAVDVQRLKNENQSLRREMDELKSALRTENAQVKKENVRRVLNLFHVVDF
LRQPGSREALLSYSQEQPDRAAAFVTELDMDLLCYFNVMLTSPNGNVPHD
EAVDVSTLHCLEFLQNSNLDAFKDTSYAALNKIVDSIATSPILTDRGREE
LANAALFGDLHDGLNGNTPGYEVSHAHANVSVP*

spliced messenger RNA

>Gcaud8620.t1 ID=Gcaud8620.t1|Name=Gcaud8620.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1002bp|location=Sequence derived from alignment at NODE_329_length_29763_cov_4.543981:19949..20950- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGACCGAAAGAGAGGTGGTTGATGCATGTCTCAAAGTGGTATCCAACAG
GTGTCGGAATCTGCGGAAGGCTATTGATCGTGCCAAAACCTGGGAACAGG
CCGCAGCTAGTGGACAGGAGCTCAACCCAGAGCAAGTGGAAAGCGTCAAG
AGTTGTGTCAAGAAGGAAGCGTTGCTTGCAGAACTCCAAGAGATTCTTAA
GAAGCAAACCACAATCGTCGAGCCGTCAGAGCGCGCTGAACAGAAACAAC
AGACTAGCCAACGTTCCGCCAAAGCTGTAAGAGCGAAGGGAAAGCGTTCT
AAAGCGTCTCAGGGTCAAGGGGAAAGCCATACATCGTCTGCAGATGGTAC
TCAGAGAGATGATGATTCTGACATTTCCAACACAGCGCAAGAGAAGAACA
GGAGCCACGGGACAACTGATGACTCGTCGGAGGTATCTCCGTCACAGTAC
CCCGCCGTGGATGTGCAGAGGTTGAAGAATGAGAACCAATCGCTGCGGCG
AGAAATGGATGAACTGAAGAGCGCGCTCCGTACTGAAAATGCCCAAGTCA
AGAAGGAGAACGTGCGCAGGGTGCTAAACCTTTTCCATGTCGTTGATTTT
CTCCGCCAACCAGGATCTCGGGAGGCACTACTCAGCTACTCTCAAGAGCA
ACCAGACAGAGCAGCCGCTTTTGTCACAGAACTGGATATGGATCTGTTGT
GCTACTTTAATGTAATGCTGACGTCTCCAAATGGAAACGTGCCTCACGAT
GAGGCAGTTGATGTTTCAACTCTCCACTGCCTCGAGTTTCTTCAAAACTC
CAATTTGGACGCTTTCAAGGATACGTCGTACGCCGCTTTGAACAAGATCG
TGGATTCTATTGCGACATCCCCAATACTAACTGATAGAGGGAGAGAGGAG
TTAGCGAATGCTGCACTGTTTGGAGATCTTCATGACGGTCTAAACGGGAA
TACTCCTGGGTATGAAGTTAGCCATGCCCATGCAAACGTTTCCGTACCTT
AA

protein sequence of Gcaud8620.t1

>Gcaud8620.t1 ID=Gcaud8620.t1|Name=Gcaud8620.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=334bp
MTEREVVDACLKVVSNRCRNLRKAIDRAKTWEQAAASGQELNPEQVESVK
SCVKKEALLAELQEILKKQTTIVEPSERAEQKQQTSQRSAKAVRAKGKRS
KASQGQGESHTSSADGTQRDDDSDISNTAQEKNRSHGTTDDSSEVSPSQY
PAVDVQRLKNENQSLRREMDELKSALRTENAQVKKENVRRVLNLFHVVDF
LRQPGSREALLSYSQEQPDRAAAFVTELDMDLLCYFNVMLTSPNGNVPHD
EAVDVSTLHCLEFLQNSNLDAFKDTSYAALNKIVDSIATSPILTDRGREE
LANAALFGDLHDGLNGNTPGYEVSHAHANVSVP*

mRNA from alignment at NODE_329_length_29763_cov_4.543981:19949..20950-

Legend: polypeptideCDSexonstart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud8620.t1 ID=Gcaud8620.t1|Name=Gcaud8620.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1002bp|location=Sequence derived from alignment at NODE_329_length_29763_cov_4.543981:19949..20950- (Gracilaria caudata M_176_S67 male)
ATGACCGAAAGAGAGGTGGTTGATGCATGTCTCAAAGTGGTATCCAACAG
GTGTCGGAATCTGCGGAAGGCTATTGATCGTGCCAAAACCTGGGAACAGG
CCGCAGCTAGTGGACAGGAGCTCAACCCAGAGCAAGTGGAAAGCGTCAAG
AGTTGTGTCAAGAAGGAAGCGTTGCTTGCAGAACTCCAAGAGATTCTTAA
GAAGCAAACCACAATCGTCGAGCCGTCAGAGCGCGCTGAACAGAAACAAC
AGACTAGCCAACGTTCCGCCAAAGCTGTAAGAGCGAAGGGAAAGCGTTCT
AAAGCGTCTCAGGGTCAAGGGGAAAGCCATACATCGTCTGCAGATGGTAC
TCAGAGAGATGATGATTCTGACATTTCCAACACAGCGCAAGAGAAGAACA
GGAGCCACGGGACAACTGATGACTCGTCGGAGGTATCTCCGTCACAGTAC
CCCGCCGTGGATGTGCAGAGGTTGAAGAATGAGAACCAATCGCTGCGGCG
AGAAATGGATGAACTGAAGAGCGCGCTCCGTACTGAAAATGCCCAAGTCA
AGAAGGAGAACGTGCGCAGGGTGCTAAACCTTTTCCATGTCGTTGATTTT
CTCCGCCAACCAGGATCTCGGGAGGCACTACTCAGCTACTCTCAAGAGCA
ACCAGACAGAGCAGCCGCTTTTGTCACAGAACTGGATATGGATCTGTTGT
GCTACTTTAATGTAATGCTGACGTCTCCAAATGGAAACGTGCCTCACGAT
GAGGCAGTTGATGTTTCAACTCTCCACTGCCTCGAGTTTCTTCAAAACTC
CAATTTGGACGCTTTCAAGGATACGTCGTACGCCGCTTTGAACAAGATCG
TGGATTCTATTGCGACATCCCCAATACTAACTGATAGAGGGAGAGAGGAG
TTAGCGAATGCTGCACTGTTTGGAGATCTTCATGACGGTCTAAACGGGAA
TACTCCTGGGTATGAAGTTAGCCATGCCCATGCAAACGTTTCCGTACCTT
AA

Coding sequence (CDS) from alignment at NODE_329_length_29763_cov_4.543981:19949..20950-

>Gcaud8620.t1 ID=Gcaud8620.t1|Name=Gcaud8620.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1002bp|location=Sequence derived from alignment at NODE_329_length_29763_cov_4.543981:19949..20950- (Gracilaria caudata M_176_S67 male)
ATGACCGAAAGAGAGGTGGTTGATGCATGTCTCAAAGTGGTATCCAACAG
GTGTCGGAATCTGCGGAAGGCTATTGATCGTGCCAAAACCTGGGAACAGG
CCGCAGCTAGTGGACAGGAGCTCAACCCAGAGCAAGTGGAAAGCGTCAAG
AGTTGTGTCAAGAAGGAAGCGTTGCTTGCAGAACTCCAAGAGATTCTTAA
GAAGCAAACCACAATCGTCGAGCCGTCAGAGCGCGCTGAACAGAAACAAC
AGACTAGCCAACGTTCCGCCAAAGCTGTAAGAGCGAAGGGAAAGCGTTCT
AAAGCGTCTCAGGGTCAAGGGGAAAGCCATACATCGTCTGCAGATGGTAC
TCAGAGAGATGATGATTCTGACATTTCCAACACAGCGCAAGAGAAGAACA
GGAGCCACGGGACAACTGATGACTCGTCGGAGGTATCTCCGTCACAGTAC
CCCGCCGTGGATGTGCAGAGGTTGAAGAATGAGAACCAATCGCTGCGGCG
AGAAATGGATGAACTGAAGAGCGCGCTCCGTACTGAAAATGCCCAAGTCA
AGAAGGAGAACGTGCGCAGGGTGCTAAACCTTTTCCATGTCGTTGATTTT
CTCCGCCAACCAGGATCTCGGGAGGCACTACTCAGCTACTCTCAAGAGCA
ACCAGACAGAGCAGCCGCTTTTGTCACAGAACTGGATATGGATCTGTTGT
GCTACTTTAATGTAATGCTGACGTCTCCAAATGGAAACGTGCCTCACGAT
GAGGCAGTTGATGTTTCAACTCTCCACTGCCTCGAGTTTCTTCAAAACTC
CAATTTGGACGCTTTCAAGGATACGTCGTACGCCGCTTTGAACAAGATCG
TGGATTCTATTGCGACATCCCCAATACTAACTGATAGAGGGAGAGAGGAG
TTAGCGAATGCTGCACTGTTTGGAGATCTTCATGACGGTCTAAACGGGAA
TACTCCTGGGTATGAAGTTAGCCATGCCCATGCAAACGTTTCCGTACCTT
AA