Gcaud8619.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud8619.t1
Unique Name	Gcaud8619.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	217

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_329_length_29763_cov_4.543981	contig	NODE_329_length_29763_cov_4.543981:18852..19502 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	130081.XP_005708638.1
Preferred name	BTF3
PFAMs	NAC
Max annot lvl	2759\|Eukaryota
KEGG ko	ko:K01527
KEGG Pathway	ko04214,map04214
GOs	GO:0000003,GO:0000578,GO:0001700,GO:0001701,GO:0003002,GO:0003006,GO:0003674,GO:0005215,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005739,GO:0005829,GO:0005840,GO:0005844,GO:0005854,GO:0006139,GO:0006351,GO:0006366,GO:0006403,GO:0006457,GO:0006458,GO:0006605,GO:0006612,GO:0006613,GO:0006620,GO:0006725,GO:0006807,GO:0006810,GO:0006886,GO:0006914,GO:0006950,GO:0006970,GO:0007028,GO:0007275,GO:0007276,GO:0007281,GO:0007292,GO:0007308,GO:0007309,GO:0007314,GO:0007315,GO:0007317,GO:0007318,GO:0007350,GO:0007351,GO:0007389,GO:0008104,GO:0008150,GO:0008152,GO:0008298,GO:0008358,GO:0008565,GO:0008595,GO:0009056,GO:0009058,GO:0009059,GO:0009628,GO:0009651,GO:0009790,GO:0009792,GO:0009798,GO:0009880,GO:0009948,GO:0009952,GO:0009987,GO:0009994,GO:0010467,GO:0010941,GO:0015031,GO:0015833,GO:0016043,GO:0016070,GO:0016236,GO:0018130,GO:0019438,GO:0019953,GO:0021700,GO:0022412,GO:0022414,GO:0022607,GO:0030014,GO:0030015,GO:0030154,GO:0032501,GO:0032502,GO:0032504,GO:0032774,GO:0032879,GO:0032880,GO:0032991,GO:0033036,GO:0033365,GO:0034613,GO:0034641,GO:0034645,GO:0034654,GO:0035282,GO:0042788,GO:0042886,GO:0042981,GO:0043009,GO:0043066,GO:0043067,GO:0043069,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043900,GO:0044085,GO:0044087,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044260,GO:0044271,GO:0044424,GO:0044444,GO:0044464,GO:0044703,GO:0045047,GO:0045184,GO:0045595,GO:0045995,GO:0046483,GO:0046907,GO:0048468,GO:0048469,GO:0048477,GO:0048519,GO:0048523,GO:0048599,GO:0048609,GO:0048856,GO:0048869,GO:0050789,GO:0050793,GO:0050794,GO:0050896,GO:0051082,GO:0051083,GO:0051128,GO:0051179,GO:0051234,GO:0051239,GO:0051641,GO:0051649,GO:0051704,GO:0060281,GO:0060284,GO:0060341,GO:0060548,GO:0060810,GO:0060811,GO:0061919,GO:0065007,GO:0070201,GO:0070727,GO:0070972,GO:0071702,GO:0071704,GO:0071705,GO:0071840,GO:0072594,GO:0072599,GO:0072657,GO:0090150,GO:0090304,GO:0097659,GO:1901360,GO:1901362,GO:1901576,GO:1902875,GO:1903429,GO:1904580,GO:1905879,GO:1990904,GO:2000026,GO:2000241
Evalue	1.46e-56
EggNOG OGs	KOG2240@1\|root,KOG2240@2759\|Eukaryota
Description	protein transport
COG category	K
BRITE	ko00000,ko00001

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud8619	Gcaud8619	Gracilaria caudata M_176_S67 male	gene	NODE_329_length_29763_cov_4.543981 18852..19502 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud8619.t1.start1	Gcaud8619.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_329_length_29763_cov_4.543981 18852..18854 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud8619.t1.CDS1	Gcaud8619.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_329_length_29763_cov_4.543981 18852..19502 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud8619.t1.exon1	Gcaud8619.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_329_length_29763_cov_4.543981 18852..19502 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud8619.t1.stop1	Gcaud8619.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_329_length_29763_cov_4.543981 19500..19502 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud8619.t1	Gcaud8619.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_329_length_29763_cov_4.543981 18852..19502 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_329_length_29763_cov_4.543981:18852..19502+
coding sequence from alignment at NODE_329_length_29763_cov_4.543981:18852..19502+

mRNA sequence

>Gcaud8619.t1 ID=Gcaud8619.t1|Name=Gcaud8619.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=217bp
MEGGIDKEKLAKLQRMAAGVRVGGKGSVRRKKKAVHKAAPTDDKRLQTTL
KRLQLSHLPGIEEVNIFRDNGQVINFQNPKVQAQISANTYVVSGQAVTKP
LQDMLPSIVNQLGADNMPQMKSLMDQLGAAGIGGQAPPLRKSASIEINEE
EIPDLVGADNFEEKATAEAAKDETAGAKDETAVATEETPAAENGENANGE
DKPAEGGEQEAEQLAS*

spliced messenger RNA

>Gcaud8619.t1 ID=Gcaud8619.t1|Name=Gcaud8619.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=651bp|location=Sequence derived from alignment at NODE_329_length_29763_cov_4.543981:18852..19502+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGAAGGCGGAATCGATAAGGAAAAGCTCGCCAAACTTCAGCGCATGGC
CGCCGGTGTGCGAGTCGGCGGAAAAGGTTCTGTTCGAAGAAAGAAGAAGG
CTGTTCACAAGGCCGCCCCCACCGATGACAAACGCCTGCAGACTACTCTC
AAGCGCCTTCAACTCAGCCACCTTCCGGGTATCGAAGAGGTCAATATCTT
CCGCGACAACGGCCAAGTAATTAATTTCCAGAACCCTAAAGTTCAAGCGC
AAATCTCGGCAAACACGTACGTCGTGTCCGGACAGGCTGTTACCAAACCT
CTGCAGGACATGCTGCCTAGCATTGTCAACCAACTTGGTGCAGATAATAT
GCCGCAGATGAAATCGCTCATGGATCAACTTGGAGCCGCCGGTATTGGCG
GTCAGGCTCCGCCGTTAAGAAAAAGTGCATCGATTGAAATAAATGAGGAA
GAAATCCCGGATCTCGTGGGTGCCGACAACTTTGAAGAGAAAGCTACTGC
CGAGGCTGCAAAGGACGAAACCGCGGGCGCGAAGGACGAGACTGCGGTCG
CGACGGAGGAGACACCGGCTGCGGAGAACGGAGAAAACGCAAATGGTGAA
GATAAACCAGCTGAGGGCGGTGAGCAAGAGGCTGAACAGCTTGCATCTTA
G

protein sequence of Gcaud8619.t1

>Gcaud8619.t1 ID=Gcaud8619.t1|Name=Gcaud8619.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=217bp
MEGGIDKEKLAKLQRMAAGVRVGGKGSVRRKKKAVHKAAPTDDKRLQTTL
KRLQLSHLPGIEEVNIFRDNGQVINFQNPKVQAQISANTYVVSGQAVTKP
LQDMLPSIVNQLGADNMPQMKSLMDQLGAAGIGGQAPPLRKSASIEINEE
EIPDLVGADNFEEKATAEAAKDETAGAKDETAVATEETPAAENGENANGE
DKPAEGGEQEAEQLAS*

mRNA from alignment at NODE_329_length_29763_cov_4.543981:18852..19502+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud8619.t1 ID=Gcaud8619.t1|Name=Gcaud8619.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=651bp|location=Sequence derived from alignment at NODE_329_length_29763_cov_4.543981:18852..19502+ (Gracilaria caudata M_176_S67 male)
ATGGAAGGCGGAATCGATAAGGAAAAGCTCGCCAAACTTCAGCGCATGGC
CGCCGGTGTGCGAGTCGGCGGAAAAGGTTCTGTTCGAAGAAAGAAGAAGG
CTGTTCACAAGGCCGCCCCCACCGATGACAAACGCCTGCAGACTACTCTC
AAGCGCCTTCAACTCAGCCACCTTCCGGGTATCGAAGAGGTCAATATCTT
CCGCGACAACGGCCAAGTAATTAATTTCCAGAACCCTAAAGTTCAAGCGC
AAATCTCGGCAAACACGTACGTCGTGTCCGGACAGGCTGTTACCAAACCT
CTGCAGGACATGCTGCCTAGCATTGTCAACCAACTTGGTGCAGATAATAT
GCCGCAGATGAAATCGCTCATGGATCAACTTGGAGCCGCCGGTATTGGCG
GTCAGGCTCCGCCGTTAAGAAAAAGTGCATCGATTGAAATAAATGAGGAA
GAAATCCCGGATCTCGTGGGTGCCGACAACTTTGAAGAGAAAGCTACTGC
CGAGGCTGCAAAGGACGAAACCGCGGGCGCGAAGGACGAGACTGCGGTCG
CGACGGAGGAGACACCGGCTGCGGAGAACGGAGAAAACGCAAATGGTGAA
GATAAACCAGCTGAGGGCGGTGAGCAAGAGGCTGAACAGCTTGCATCTTA
G

Coding sequence (CDS) from alignment at NODE_329_length_29763_cov_4.543981:18852..19502+

>Gcaud8619.t1 ID=Gcaud8619.t1|Name=Gcaud8619.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=651bp|location=Sequence derived from alignment at NODE_329_length_29763_cov_4.543981:18852..19502+ (Gracilaria caudata M_176_S67 male)
ATGGAAGGCGGAATCGATAAGGAAAAGCTCGCCAAACTTCAGCGCATGGC
CGCCGGTGTGCGAGTCGGCGGAAAAGGTTCTGTTCGAAGAAAGAAGAAGG
CTGTTCACAAGGCCGCCCCCACCGATGACAAACGCCTGCAGACTACTCTC
AAGCGCCTTCAACTCAGCCACCTTCCGGGTATCGAAGAGGTCAATATCTT
CCGCGACAACGGCCAAGTAATTAATTTCCAGAACCCTAAAGTTCAAGCGC
AAATCTCGGCAAACACGTACGTCGTGTCCGGACAGGCTGTTACCAAACCT
CTGCAGGACATGCTGCCTAGCATTGTCAACCAACTTGGTGCAGATAATAT
GCCGCAGATGAAATCGCTCATGGATCAACTTGGAGCCGCCGGTATTGGCG
GTCAGGCTCCGCCGTTAAGAAAAAGTGCATCGATTGAAATAAATGAGGAA
GAAATCCCGGATCTCGTGGGTGCCGACAACTTTGAAGAGAAAGCTACTGC
CGAGGCTGCAAAGGACGAAACCGCGGGCGCGAAGGACGAGACTGCGGTCG
CGACGGAGGAGACACCGGCTGCGGAGAACGGAGAAAACGCAAATGGTGAA
GATAAACCAGCTGAGGGCGGTGAGCAAGAGGCTGAACAGCTTGCATCTTA
G