Gcaud8617.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud8617.t1
Unique Name	Gcaud8617.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	335

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_329_length_29763_cov_4.543981	contig	NODE_329_length_29763_cov_4.543981:14302..15306 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	130081.XP_005707718.1
Preferred name	PDHB1
PFAMs	Transket_pyr,Transketolase_C
Max annot lvl	2759\|Eukaryota
KEGG rclass	RC00004,RC00027,RC00627,RC02742,RC02744,RC02882
KEGG ko	ko:K00162
KEGG Reaction	R00014,R00209,R01699,R03270
KEGG Pathway	ko00010,ko00020,ko00620,ko01100,ko01110,ko01120,ko01130,ko01200,ko04066,ko04922,ko05230,map00010,map00020,map00620,map01100,map01110,map01120,map01130,map01200,map04066,map04922,map05230
KEGG Module	M00307
Evalue	4.3e-164
EggNOG OGs	COG0022@1\|root,KOG0524@2759\|Eukaryota
EC	1.2.4.1
Description	pyruvate dehydrogenase (acetyl-transferring) activity
COG category	C
BRITE	br01601,ko00000,ko00001,ko00002,ko01000

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud8617	Gcaud8617	Gracilaria caudata M_176_S67 male	gene	NODE_329_length_29763_cov_4.543981 14302..15306 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud8617.t1.start1	Gcaud8617.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_329_length_29763_cov_4.543981 14302..14304 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud8617.t1.CDS1	Gcaud8617.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_329_length_29763_cov_4.543981 14302..15306 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud8617.t1.exon1	Gcaud8617.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_329_length_29763_cov_4.543981 14302..15306 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud8617.t1.stop1	Gcaud8617.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_329_length_29763_cov_4.543981 15304..15306 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud8617.t1	Gcaud8617.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_329_length_29763_cov_4.543981 14302..15306 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_329_length_29763_cov_4.543981:14302..15306+
coding sequence from alignment at NODE_329_length_29763_cov_4.543981:14302..15306+

mRNA sequence

>Gcaud8617.t1 ID=Gcaud8617.t1|Name=Gcaud8617.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=335bp
MTCREALNTAIDEELARDDRVFVIGEEVAEYDGAYKVTKGLHAKYGDRRI
VDTPITESGFTGLATGAAMAGLRPVCEFMTFNFSMQAIDHIVNSAAKTLY
MSGGQINVPIVFRGPNGASAGVGAQHSQCFASWYGSVPGLKVVSPYDVED
CRGLLKAAIRDPNPVVCLENELMYNVSFDNVPDEVMDPDFVLPIGQAKLL
REGTDVTIVGHSKWVGFAVQAAEILQQEGISAEVINLRSIRPLDRDTITE
SVKKTNRLVTVEGGWPTFGIGAEICAAVFESDAFEYLDAPVQRVSGADVP
TPYAENLEAKAFPTVEDITVAARTAMMRMLPEAA*

spliced messenger RNA

>Gcaud8617.t1 ID=Gcaud8617.t1|Name=Gcaud8617.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1005bp|location=Sequence derived from alignment at NODE_329_length_29763_cov_4.543981:14302..15306+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGACATGTCGTGAGGCACTGAATACAGCAATCGACGAGGAACTAGCCCG
CGATGATCGCGTGTTTGTAATTGGGGAAGAAGTTGCTGAATATGATGGGG
CTTACAAAGTCACCAAAGGGCTACATGCAAAATATGGCGATCGTCGAATC
GTCGATACTCCTATCACCGAATCGGGTTTCACTGGTCTGGCCACGGGTGC
TGCCATGGCGGGTTTGCGTCCCGTCTGTGAGTTTATGACCTTCAATTTCT
CTATGCAGGCAATTGATCACATTGTCAACTCCGCCGCGAAGACGCTGTAC
ATGTCTGGTGGTCAAATTAACGTGCCCATTGTGTTTCGGGGCCCCAACGG
CGCGTCTGCGGGTGTTGGGGCACAGCATTCGCAATGCTTTGCGTCTTGGT
ACGGATCCGTTCCTGGTTTGAAGGTTGTTTCGCCGTACGATGTCGAAGAC
TGTCGTGGTTTGCTCAAGGCGGCGATACGGGATCCAAATCCTGTCGTTTG
TTTAGAAAACGAACTCATGTACAATGTTAGCTTCGATAACGTGCCGGATG
AAGTGATGGATCCCGATTTCGTTCTACCCATTGGTCAGGCAAAGCTTTTG
AGAGAAGGAACAGATGTAACCATTGTTGGACATAGCAAATGGGTTGGGTT
TGCCGTTCAGGCAGCTGAAATTTTGCAGCAAGAAGGAATATCTGCCGAGG
TGATTAATCTGCGATCAATTCGTCCTCTCGACCGCGACACAATTACAGAA
TCAGTCAAGAAGACAAACAGATTGGTCACCGTTGAAGGCGGTTGGCCAAC
TTTTGGGATCGGTGCAGAGATTTGCGCTGCGGTTTTCGAGTCAGATGCAT
TTGAATACCTGGATGCGCCGGTTCAGCGAGTATCTGGTGCAGATGTGCCA
ACGCCGTACGCAGAGAATCTCGAAGCAAAAGCGTTTCCGACTGTGGAAGA
TATTACTGTAGCCGCTCGAACAGCTATGATGAGGATGCTGCCGGAAGCAG
CGTAA

protein sequence of Gcaud8617.t1

>Gcaud8617.t1 ID=Gcaud8617.t1|Name=Gcaud8617.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=335bp
MTCREALNTAIDEELARDDRVFVIGEEVAEYDGAYKVTKGLHAKYGDRRI
VDTPITESGFTGLATGAAMAGLRPVCEFMTFNFSMQAIDHIVNSAAKTLY
MSGGQINVPIVFRGPNGASAGVGAQHSQCFASWYGSVPGLKVVSPYDVED
CRGLLKAAIRDPNPVVCLENELMYNVSFDNVPDEVMDPDFVLPIGQAKLL
REGTDVTIVGHSKWVGFAVQAAEILQQEGISAEVINLRSIRPLDRDTITE
SVKKTNRLVTVEGGWPTFGIGAEICAAVFESDAFEYLDAPVQRVSGADVP
TPYAENLEAKAFPTVEDITVAARTAMMRMLPEAA*

mRNA from alignment at NODE_329_length_29763_cov_4.543981:14302..15306+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud8617.t1 ID=Gcaud8617.t1|Name=Gcaud8617.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1005bp|location=Sequence derived from alignment at NODE_329_length_29763_cov_4.543981:14302..15306+ (Gracilaria caudata M_176_S67 male)
ATGACATGTCGTGAGGCACTGAATACAGCAATCGACGAGGAACTAGCCCG
CGATGATCGCGTGTTTGTAATTGGGGAAGAAGTTGCTGAATATGATGGGG
CTTACAAAGTCACCAAAGGGCTACATGCAAAATATGGCGATCGTCGAATC
GTCGATACTCCTATCACCGAATCGGGTTTCACTGGTCTGGCCACGGGTGC
TGCCATGGCGGGTTTGCGTCCCGTCTGTGAGTTTATGACCTTCAATTTCT
CTATGCAGGCAATTGATCACATTGTCAACTCCGCCGCGAAGACGCTGTAC
ATGTCTGGTGGTCAAATTAACGTGCCCATTGTGTTTCGGGGCCCCAACGG
CGCGTCTGCGGGTGTTGGGGCACAGCATTCGCAATGCTTTGCGTCTTGGT
ACGGATCCGTTCCTGGTTTGAAGGTTGTTTCGCCGTACGATGTCGAAGAC
TGTCGTGGTTTGCTCAAGGCGGCGATACGGGATCCAAATCCTGTCGTTTG
TTTAGAAAACGAACTCATGTACAATGTTAGCTTCGATAACGTGCCGGATG
AAGTGATGGATCCCGATTTCGTTCTACCCATTGGTCAGGCAAAGCTTTTG
AGAGAAGGAACAGATGTAACCATTGTTGGACATAGCAAATGGGTTGGGTT
TGCCGTTCAGGCAGCTGAAATTTTGCAGCAAGAAGGAATATCTGCCGAGG
TGATTAATCTGCGATCAATTCGTCCTCTCGACCGCGACACAATTACAGAA
TCAGTCAAGAAGACAAACAGATTGGTCACCGTTGAAGGCGGTTGGCCAAC
TTTTGGGATCGGTGCAGAGATTTGCGCTGCGGTTTTCGAGTCAGATGCAT
TTGAATACCTGGATGCGCCGGTTCAGCGAGTATCTGGTGCAGATGTGCCA
ACGCCGTACGCAGAGAATCTCGAAGCAAAAGCGTTTCCGACTGTGGAAGA
TATTACTGTAGCCGCTCGAACAGCTATGATGAGGATGCTGCCGGAAGCAG
CGTAA

Coding sequence (CDS) from alignment at NODE_329_length_29763_cov_4.543981:14302..15306+

>Gcaud8617.t1 ID=Gcaud8617.t1|Name=Gcaud8617.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1005bp|location=Sequence derived from alignment at NODE_329_length_29763_cov_4.543981:14302..15306+ (Gracilaria caudata M_176_S67 male)
ATGACATGTCGTGAGGCACTGAATACAGCAATCGACGAGGAACTAGCCCG
CGATGATCGCGTGTTTGTAATTGGGGAAGAAGTTGCTGAATATGATGGGG
CTTACAAAGTCACCAAAGGGCTACATGCAAAATATGGCGATCGTCGAATC
GTCGATACTCCTATCACCGAATCGGGTTTCACTGGTCTGGCCACGGGTGC
TGCCATGGCGGGTTTGCGTCCCGTCTGTGAGTTTATGACCTTCAATTTCT
CTATGCAGGCAATTGATCACATTGTCAACTCCGCCGCGAAGACGCTGTAC
ATGTCTGGTGGTCAAATTAACGTGCCCATTGTGTTTCGGGGCCCCAACGG
CGCGTCTGCGGGTGTTGGGGCACAGCATTCGCAATGCTTTGCGTCTTGGT
ACGGATCCGTTCCTGGTTTGAAGGTTGTTTCGCCGTACGATGTCGAAGAC
TGTCGTGGTTTGCTCAAGGCGGCGATACGGGATCCAAATCCTGTCGTTTG
TTTAGAAAACGAACTCATGTACAATGTTAGCTTCGATAACGTGCCGGATG
AAGTGATGGATCCCGATTTCGTTCTACCCATTGGTCAGGCAAAGCTTTTG
AGAGAAGGAACAGATGTAACCATTGTTGGACATAGCAAATGGGTTGGGTT
TGCCGTTCAGGCAGCTGAAATTTTGCAGCAAGAAGGAATATCTGCCGAGG
TGATTAATCTGCGATCAATTCGTCCTCTCGACCGCGACACAATTACAGAA
TCAGTCAAGAAGACAAACAGATTGGTCACCGTTGAAGGCGGTTGGCCAAC
TTTTGGGATCGGTGCAGAGATTTGCGCTGCGGTTTTCGAGTCAGATGCAT
TTGAATACCTGGATGCGCCGGTTCAGCGAGTATCTGGTGCAGATGTGCCA
ACGCCGTACGCAGAGAATCTCGAAGCAAAAGCGTTTCCGACTGTGGAAGA
TATTACTGTAGCCGCTCGAACAGCTATGATGAGGATGCTGCCGGAAGCAG
CGTAA