|
|
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Seed ortholog | 130081.XP_005704606.1 |
| PFAMs | Fer4,Fer4_9,LdpA_C |
| Max annot lvl | 2759|Eukaryota |
| Evalue | 1.17e-43 |
| EggNOG OGs | COG1142@1|root,2QU4W@2759|Eukaryota |
| Description | Iron-Sulfur binding protein C terminal |
| COG category | C |
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following exon feature(s) are a part of this mRNA:
The following start_codon feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| Gcaud8616.t1.start1 | Gcaud8616.t1.start1 | Gracilaria caudata M_176_S67 male | start_codon | NODE_329_length_29763_cov_4.543981 12755..12757 + |
The following intron feature(s) are a part of this mRNA:
The following stop_codon feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| Gcaud8616.t1.stop1 | Gcaud8616.t1.stop1 | Gracilaria caudata M_176_S67 male | stop_codon | NODE_329_length_29763_cov_4.543981 13806..13808 + |
Sequences
The following sequences are available for this feature:
mRNA sequence >Gcaud8616.t1 ID=Gcaud8616.t1|Name=Gcaud8616.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=240bp
MDGTILDSTSSISINNITAVNKLLEHTGVLFIPATGKSRIGAIRSMKQLG
ERLQHKYPNGCPAIAKDMDIPLIAYSRDQIVCEQKHDYMDLLPSYHEPAA
TQVGDWETVFDMQPFNKFIFMAEPHFIDNLRPIVAEKVGDMGHLTQAQSN
MLEVLPPNSSKGDGVRRLLDDLGVHPEDVLAIGDAENDLELLSMVGYSCA
VGNALPSVKEAAMFTDLPTNDEHAVAHAIDRFFSDFVQQ* back to topspliced messenger RNA >Gcaud8616.t1 ID=Gcaud8616.t1|Name=Gcaud8616.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=720bp|location=Sequence derived from alignment at NODE_329_length_29763_cov_4.543981:12755..13808+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.
ATGGATGGAACCATTCTGGATAGCACGTCTTCAATTTCTATCAACAACAT
CACAGCAGTGAACAAACTCTTGGAGCATACTGGAGTTTTGTTTATTCCGG
CCACTGGTAAATCTAGAATTGGTGCCATTCGTTCGATGAAACAGCTTGGT
GAACGTTTGCAGCACAAGTATCCGAATGGGTGTCCTGCTATTGCAAAGGA
CATGGATATCCCTCTCATCGCGTACAGTCGTGATCAAATTGTATGCGAAC
AAAAGCATGATTATATGGATCTGCTTCCGTCTTACCATGAGCCGGCGGCG
ACGCAAGTGGGCGATTGGGAAACCGTGTTCGACATGCAACCGTTTAACAA
GTTTATTTTCATGGCCGAACCACACTTTATTGATAATCTTCGTCCCATAG
TCGCAGAAAAGGTTGGCGACATGGGGCATCTGACTCAAGCTCAGAGTAAC
ATGCTCGAGGTGTTACCGCCAAATTCTTCGAAAGGCGATGGTGTGCGACG
TCTTTTGGATGATCTTGGTGTTCATCCTGAAGACGTGCTGGCTATTGGAG
ACGCTGAAAACGACTTGGAGCTGCTGAGCATGGTGGGGTATTCGTGCGCA
GTTGGAAATGCACTGCCTTCTGTGAAGGAAGCGGCAATGTTTACGGACTT
GCCGACGAACGACGAACATGCGGTTGCGCACGCAATTGACCGCTTCTTCA
GCGACTTCGTTCAACAATAA back to topprotein sequence of Gcaud8616.t1 >Gcaud8616.t1 ID=Gcaud8616.t1|Name=Gcaud8616.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=240bp
MDGTILDSTSSISINNITAVNKLLEHTGVLFIPATGKSRIGAIRSMKQLG
ERLQHKYPNGCPAIAKDMDIPLIAYSRDQIVCEQKHDYMDLLPSYHEPAA
TQVGDWETVFDMQPFNKFIFMAEPHFIDNLRPIVAEKVGDMGHLTQAQSN
MLEVLPPNSSKGDGVRRLLDDLGVHPEDVLAIGDAENDLELLSMVGYSCA
VGNALPSVKEAAMFTDLPTNDEHAVAHAIDRFFSDFVQQ* back to topmRNA from alignment at NODE_329_length_29763_cov_4.543981:12755..13808+ Legend: polypeptideCDSexonstart_codonintronstop_codon Hold the cursor over a type above to highlight its positions in the sequence below. >Gcaud8616.t1 ID=Gcaud8616.t1|Name=Gcaud8616.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1054bp|location=Sequence derived from alignment at NODE_329_length_29763_cov_4.543981:12755..13808+ (Gracilaria caudata M_176_S67 male)
ATGGTAAGTCGTCCACAAAGGCCTTCACGCCTAGCCCAGAGCTCAATTCG
TTAAAAACTGACCAAACCTTTTTGTTCTATCAGGATGGAACCATTCTGGA
TAGCACGTCTTCAATTTCTATCAACAACATCACAGCAGTGAACAAACTCT
TGGAGCATACTGGAGTTTTGTTTATTCCGGCCACTGGTAAATCTAGAATT
GGTGCCATTCGTTCGATGAAACAGCTTGGTGAACGTTTGCAGCACAAGTA
TCCGAATGGGTGTCCTGGTGTGTATCTTCAGGGTCTTCTGGTGTTTAATA
CCGACGGTGAGATCGTTTACGAGAACAAATGTGATGCCCAACTAACTCAG
ACTGTCACAGCTATTGCAAAGGACATGGATATCCCTCTCATCGCGTACAG
TCGTGATCAAATTGTATGCGAACAAAAGCATGATTATATGGATCTGCTTC
CGTCTTACCATGTATGTGACACAATTTCAAAAACTTGTACCATCAAAAAC
AGTGTTCAGCGAGATCTAACTGTTGTGCTTTGCGTTCTTGTTGACAGGAG
CCGGCGGCGACGCAAGTGGGCGATTGGGAAACCGTGTTCGACATGCAACC
GTTTAACAAGTTTATTTTCATGGCCGAACCACACTTTATTGATAATCTTC
GTCCCATAGTCGCAGAAAAGGTTGGCGACATGGGGCATCTGACTCAAGCT
CAGAGTAACATGCTCGAGGTGTTACCGCCAAATTCTTCGAAAGGCGATGG
TGTGCGACGTCTTTTGGATGATCTTGGTGTTCATCCTGAAGACGTGCTGG
CTATTGGAGACGCTGAAAACGTACGTTGTTGACCACCTTTTGTATCGGAG
ACTGTGAATGCTGACCATGATTACATTTCTTGTATGTGAAAATAGGACTT
GGAGCTGCTGAGCATGGTGGGGTATTCGTGCGCAGTTGGAAATGCACTGC
CTTCTGTGAAGGAAGCGGCAATGTTTACGGACTTGCCGACGAACGACGAA
CATGCGGTTGCGCACGCAATTGACCGCTTCTTCAGCGACTTCGTTCAACA
ATAA back to topCoding sequence (CDS) from alignment at NODE_329_length_29763_cov_4.543981:12755..13808+ >Gcaud8616.t1 ID=Gcaud8616.t1|Name=Gcaud8616.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=720bp|location=Sequence derived from alignment at NODE_329_length_29763_cov_4.543981:12755..13808+ (Gracilaria caudata M_176_S67 male)
ATGGATGGAACCATTCTGGATAGCACGTCTTCAATTTCTATCAACAACAT
CACAGCAGTGAACAAACTCTTGGAGCATACTGGAGTTTTGTTTATTCCGG
CCACTGGTAAATCTAGAATTGGTGCCATTCGTTCGATGAAACAGCTTGGT
GAACGTTTGCAGCACAAGTATCCGAATGGGTGTCCTGCTATTGCAAAGGA
CATGGATATCCCTCTCATCGCGTACAGTCGTGATCAAATTGTATGCGAAC
AAAAGCATGATTATATGGATCTGCTTCCGTCTTACCATGAGCCGGCGGCG
ACGCAAGTGGGCGATTGGGAAACCGTGTTCGACATGCAACCGTTTAACAA
GTTTATTTTCATGGCCGAACCACACTTTATTGATAATCTTCGTCCCATAG
TCGCAGAAAAGGTTGGCGACATGGGGCATCTGACTCAAGCTCAGAGTAAC
ATGCTCGAGGTGTTACCGCCAAATTCTTCGAAAGGCGATGGTGTGCGACG
TCTTTTGGATGATCTTGGTGTTCATCCTGAAGACGTGCTGGCTATTGGAG
ACGCTGAAAACGACTTGGAGCTGCTGAGCATGGTGGGGTATTCGTGCGCA
GTTGGAAATGCACTGCCTTCTGTGAAGGAAGCGGCAATGTTTACGGACTT
GCCGACGAACGACGAACATGCGGTTGCGCACGCAATTGACCGCTTCTTCA
GCGACTTCGTTCAACAATAA back to top
|