Gcaud8613.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGcaud8613.t1
Unique NameGcaud8613.t1
TypemRNA
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length277
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_329_length_29763_cov_4.543981contigNODE_329_length_29763_cov_4.543981:5549..6379 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog36080.S2IUY4
PFAMsSRPRB
Max annot lvl4751|Fungi
Evalue2.43e-33
EggNOG OGsCOG2229@1|root,KOG0090@2759|Eukaryota,38YGY@33154|Opisthokonta,3Q20V@4751|Fungi,1GWSS@112252|Fungi incertae sedis
DescriptionSignal recognition particle receptor beta subunit
COG categoryU
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud8613Gcaud8613Gracilaria caudata M_176_S67 malegeneNODE_329_length_29763_cov_4.543981 5549..6379 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud8613.t1.stop1Gcaud8613.t1.stop1Gracilaria caudata M_176_S67 malestop_codonNODE_329_length_29763_cov_4.543981 5549..5551 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud8613.t1.CDS1Gcaud8613.t1.CDS1Gracilaria caudata M_176_S67 maleCDSNODE_329_length_29763_cov_4.543981 5549..6379 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud8613.t1.exon1Gcaud8613.t1.exon1Gracilaria caudata M_176_S67 maleexonNODE_329_length_29763_cov_4.543981 5549..6379 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud8613.t1.start1Gcaud8613.t1.start1Gracilaria caudata M_176_S67 malestart_codonNODE_329_length_29763_cov_4.543981 6377..6379 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud8613.t1Gcaud8613.t1Gracilaria caudata M_176_S67 malepolypeptideNODE_329_length_29763_cov_4.543981 5549..6379 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gcaud8613.t1 ID=Gcaud8613.t1|Name=Gcaud8613.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=277bp
MVLEQYAGPLRPFLFEAAGLIEEMMTMRGIDAPPIPLMIDSIIVTFVLIV
LSLVFTSLRRKDTRDSLVIVGISGESDASSVGKTSLFTVLRDGVFPNYGT
VPSMQPNEAQVYLAGTNLLVPIVDYPGHPRLLYKLPEYLSRAKGLVFVVD
GELFTAQARRDATFLHDILTNPVVAKNATPILIFINKTDAQKCAKEATVK
VRLEAELDRVRTASASRLRSVGAEGNEEAEEERAFLGFENEAFSFEHVAS
PVVFASGSAQELDVTAIVDFAKIHFS*
back to top

spliced messenger RNA

>Gcaud8613.t1 ID=Gcaud8613.t1|Name=Gcaud8613.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=831bp|location=Sequence derived from alignment at NODE_329_length_29763_cov_4.543981:5549..6379- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGTATTAGAGCAATATGCGGGGCCACTTCGTCCCTTCCTTTTTGAGGC
GGCAGGGTTGATAGAGGAGATGATGACGATGAGAGGTATCGACGCCCCAC
CAATCCCGTTGATGATAGACTCAATAATCGTTACGTTTGTGTTAATAGTT
CTTTCTTTGGTGTTCACATCCTTGCGAAGAAAGGACACGAGGGATTCATT
AGTAATTGTCGGTATATCTGGTGAATCGGATGCATCTTCCGTTGGAAAGA
CTTCCCTGTTTACAGTGCTACGAGATGGCGTTTTTCCAAACTACGGTACG
GTTCCTTCGATGCAGCCCAACGAAGCGCAAGTTTATCTAGCTGGGACAAA
CCTTCTCGTTCCTATTGTTGATTATCCCGGTCATCCGCGTTTACTCTATA
AGCTGCCAGAGTATCTATCACGCGCAAAAGGCCTGGTTTTCGTTGTCGAC
GGGGAACTATTCACCGCACAAGCGCGAAGAGATGCCACATTTCTACATGA
CATACTTACAAATCCGGTCGTTGCAAAGAATGCAACACCGATTCTCATCT
TTATCAACAAGACCGATGCACAAAAGTGCGCAAAAGAAGCCACTGTCAAG
GTGAGATTGGAAGCAGAATTGGATCGTGTTCGAACAGCTAGCGCCTCCAG
ACTGCGATCAGTCGGTGCAGAGGGTAACGAGGAAGCAGAAGAAGAGCGTG
CGTTCCTGGGATTCGAAAACGAAGCATTTTCTTTTGAGCATGTGGCGTCT
CCTGTTGTGTTCGCCTCCGGTTCAGCGCAGGAACTTGATGTGACAGCCAT
AGTTGATTTCGCGAAGATTCATTTCTCGTGA
back to top

protein sequence of Gcaud8613.t1

>Gcaud8613.t1 ID=Gcaud8613.t1|Name=Gcaud8613.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=277bp
MVLEQYAGPLRPFLFEAAGLIEEMMTMRGIDAPPIPLMIDSIIVTFVLIV
LSLVFTSLRRKDTRDSLVIVGISGESDASSVGKTSLFTVLRDGVFPNYGT
VPSMQPNEAQVYLAGTNLLVPIVDYPGHPRLLYKLPEYLSRAKGLVFVVD
GELFTAQARRDATFLHDILTNPVVAKNATPILIFINKTDAQKCAKEATVK
VRLEAELDRVRTASASRLRSVGAEGNEEAEEERAFLGFENEAFSFEHVAS
PVVFASGSAQELDVTAIVDFAKIHFS*
back to top

mRNA from alignment at NODE_329_length_29763_cov_4.543981:5549..6379-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gcaud8613.t1 ID=Gcaud8613.t1|Name=Gcaud8613.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=831bp|location=Sequence derived from alignment at NODE_329_length_29763_cov_4.543981:5549..6379- (Gracilaria caudata M_176_S67 male)
ATGGTATTAGAGCAATATGCGGGGCCACTTCGTCCCTTCCTTTTTGAGGC
GGCAGGGTTGATAGAGGAGATGATGACGATGAGAGGTATCGACGCCCCAC
CAATCCCGTTGATGATAGACTCAATAATCGTTACGTTTGTGTTAATAGTT
CTTTCTTTGGTGTTCACATCCTTGCGAAGAAAGGACACGAGGGATTCATT
AGTAATTGTCGGTATATCTGGTGAATCGGATGCATCTTCCGTTGGAAAGA
CTTCCCTGTTTACAGTGCTACGAGATGGCGTTTTTCCAAACTACGGTACG
GTTCCTTCGATGCAGCCCAACGAAGCGCAAGTTTATCTAGCTGGGACAAA
CCTTCTCGTTCCTATTGTTGATTATCCCGGTCATCCGCGTTTACTCTATA
AGCTGCCAGAGTATCTATCACGCGCAAAAGGCCTGGTTTTCGTTGTCGAC
GGGGAACTATTCACCGCACAAGCGCGAAGAGATGCCACATTTCTACATGA
CATACTTACAAATCCGGTCGTTGCAAAGAATGCAACACCGATTCTCATCT
TTATCAACAAGACCGATGCACAAAAGTGCGCAAAAGAAGCCACTGTCAAG
GTGAGATTGGAAGCAGAATTGGATCGTGTTCGAACAGCTAGCGCCTCCAG
ACTGCGATCAGTCGGTGCAGAGGGTAACGAGGAAGCAGAAGAAGAGCGTG
CGTTCCTGGGATTCGAAAACGAAGCATTTTCTTTTGAGCATGTGGCGTCT
CCTGTTGTGTTCGCCTCCGGTTCAGCGCAGGAACTTGATGTGACAGCCAT
AGTTGATTTCGCGAAGATTCATTTCTCGTGA
back to top

Coding sequence (CDS) from alignment at NODE_329_length_29763_cov_4.543981:5549..6379-

>Gcaud8613.t1 ID=Gcaud8613.t1|Name=Gcaud8613.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=831bp|location=Sequence derived from alignment at NODE_329_length_29763_cov_4.543981:5549..6379- (Gracilaria caudata M_176_S67 male)
ATGGTATTAGAGCAATATGCGGGGCCACTTCGTCCCTTCCTTTTTGAGGC
GGCAGGGTTGATAGAGGAGATGATGACGATGAGAGGTATCGACGCCCCAC
CAATCCCGTTGATGATAGACTCAATAATCGTTACGTTTGTGTTAATAGTT
CTTTCTTTGGTGTTCACATCCTTGCGAAGAAAGGACACGAGGGATTCATT
AGTAATTGTCGGTATATCTGGTGAATCGGATGCATCTTCCGTTGGAAAGA
CTTCCCTGTTTACAGTGCTACGAGATGGCGTTTTTCCAAACTACGGTACG
GTTCCTTCGATGCAGCCCAACGAAGCGCAAGTTTATCTAGCTGGGACAAA
CCTTCTCGTTCCTATTGTTGATTATCCCGGTCATCCGCGTTTACTCTATA
AGCTGCCAGAGTATCTATCACGCGCAAAAGGCCTGGTTTTCGTTGTCGAC
GGGGAACTATTCACCGCACAAGCGCGAAGAGATGCCACATTTCTACATGA
CATACTTACAAATCCGGTCGTTGCAAAGAATGCAACACCGATTCTCATCT
TTATCAACAAGACCGATGCACAAAAGTGCGCAAAAGAAGCCACTGTCAAG
GTGAGATTGGAAGCAGAATTGGATCGTGTTCGAACAGCTAGCGCCTCCAG
ACTGCGATCAGTCGGTGCAGAGGGTAACGAGGAAGCAGAAGAAGAGCGTG
CGTTCCTGGGATTCGAAAACGAAGCATTTTCTTTTGAGCATGTGGCGTCT
CCTGTTGTGTTCGCCTCCGGTTCAGCGCAGGAACTTGATGTGACAGCCAT
AGTTGATTTCGCGAAGATTCATTTCTCGTGA
back to top