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Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Seed ortholog | 296587.XP_002508386.1 |
| PFAMs | Ham1p_like |
| Max annot lvl | 3041|Chlorophyta |
| KEGG rclass | RC00002 |
| KEGG ko | ko:K01519 |
| KEGG Reaction | R00426,R00720,R01855,R02100,R02720,R03531,R08243 |
| KEGG Pathway | ko00230,ko00983,ko01100,map00230,map00983,map01100 |
| Evalue | 6.71e-84 |
| EggNOG OGs | COG0127@1|root,KOG3222@2759|Eukaryota,37PRW@33090|Viridiplantae,34JW4@3041|Chlorophyta |
| Description | Pyrophosphatase that hydrolyzes non-canonical purine nucleotides such as inosine triphosphate (ITP), deoxyinosine triphosphate (dITP) or xanthosine 5'-triphosphate (XTP) to their respective monophosphate derivatives. The enzyme does not distinguish between the deoxy- and ribose forms. Probably excludes non-canonical purines from RNA and DNA precursor pools, thus preventing their incorporation into RNA and DNA and avoiding chromosomal lesions |
| COG category | F |
| BRITE | ko00000,ko00001,ko01000 |
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following start_codon feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| Gcaud8612.t1.start1 | Gcaud8612.t1.start1 | Gracilaria caudata M_176_S67 male | start_codon | NODE_329_length_29763_cov_4.543981 4732..4734 + |
The following CDS feature(s) are a part of this mRNA:
The following exon feature(s) are a part of this mRNA:
The following intron feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| Gcaud8612.t1.intron1 | Gcaud8612.t1.intron1 | Gracilaria caudata M_176_S67 male | intron | NODE_329_length_29763_cov_4.543981 4936..5011 + |
The following stop_codon feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| Gcaud8612.t1.stop1 | Gcaud8612.t1.stop1 | Gracilaria caudata M_176_S67 male | stop_codon | NODE_329_length_29763_cov_4.543981 5405..5407 + |
Sequences
The following sequences are available for this feature:
mRNA sequence >Gcaud8612.t1 ID=Gcaud8612.t1|Name=Gcaud8612.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=200bp
MKLSTITFVTGNQNKLREVSQILASDPDAKSAISIVAKKIDLPELQGEVE
EIAKQKCALAVKEVGGPTLVEDTCLCFNALKGLPGPYIKWFLEKLGHDGL
NKMLAGFEDKSGYALCTFAYSSGTEGEEPKVFSGRTSGRIVPPRSKADNA
FGWDPIFEPDGFEQTYAEMDKSVKNSISHRYRALELVKKHIACLMDDDN* back to topspliced messenger RNA >Gcaud8612.t1 ID=Gcaud8612.t1|Name=Gcaud8612.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=600bp|location=Sequence derived from alignment at NODE_329_length_29763_cov_4.543981:4732..5407+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.
ATGAAACTGTCCACGATAACATTCGTGACTGGCAATCAAAACAAGTTGCG
GGAAGTTTCGCAAATCCTGGCCTCGGACCCAGACGCAAAATCTGCAATCT
CGATCGTAGCAAAGAAAATTGACCTGCCAGAACTGCAGGGAGAGGTAGAG
GAAATTGCCAAACAGAAATGCGCGCTTGCTGTTAAAGAAGTCGGTGGCCC
CACGTTGGTAGAAGATACCTGTCTGTGCTTTAATGCTCTCAAAGGTTTAC
CAGGCCCATATATAAAGTGGTTCTTAGAAAAACTTGGTCACGATGGTTTA
AATAAGATGCTCGCTGGATTCGAAGATAAGTCCGGATACGCGCTCTGCAC
TTTTGCATACTCAAGCGGAACCGAAGGTGAGGAGCCTAAGGTTTTTTCTG
GGCGTACGTCTGGAAGAATTGTCCCACCTAGGTCCAAAGCCGACAATGCC
TTTGGATGGGATCCTATTTTCGAACCTGATGGATTTGAGCAGACTTACGC
TGAGATGGATAAATCAGTCAAAAATTCAATCTCACATCGATACAGGGCGC
TTGAGCTGGTGAAAAAGCACATCGCTTGCCTAATGGACGATGACAACTAG back to topprotein sequence of Gcaud8612.t1 >Gcaud8612.t1 ID=Gcaud8612.t1|Name=Gcaud8612.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=200bp
MKLSTITFVTGNQNKLREVSQILASDPDAKSAISIVAKKIDLPELQGEVE
EIAKQKCALAVKEVGGPTLVEDTCLCFNALKGLPGPYIKWFLEKLGHDGL
NKMLAGFEDKSGYALCTFAYSSGTEGEEPKVFSGRTSGRIVPPRSKADNA
FGWDPIFEPDGFEQTYAEMDKSVKNSISHRYRALELVKKHIACLMDDDN* back to topmRNA from alignment at NODE_329_length_29763_cov_4.543981:4732..5407+ Legend: polypeptidestart_codonCDSexonintronstop_codon Hold the cursor over a type above to highlight its positions in the sequence below. >Gcaud8612.t1 ID=Gcaud8612.t1|Name=Gcaud8612.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=676bp|location=Sequence derived from alignment at NODE_329_length_29763_cov_4.543981:4732..5407+ (Gracilaria caudata M_176_S67 male)
ATGAAACTGTCCACGATAACATTCGTGACTGGCAATCAAAACAAGTTGCG
GGAAGTTTCGCAAATCCTGGCCTCGGACCCAGACGCAAAATCTGCAATCT
CGATCGTAGCAAAGAAAATTGACCTGCCAGAACTGCAGGGAGAGGTAGAG
GAAATTGCCAAACAGAAATGCGCGCTTGCTGTTAAAGAAGTCGGTGGCCC
CACGGTACGTTCGGGAATATCATGCTTCTGCACTCAGCAGTGGGTACTAA
CGGACACATCTGGGTTGAATCTCTGCGCAGTTGGTAGAAGATACCTGTCT
GTGCTTTAATGCTCTCAAAGGTTTACCAGGCCCATATATAAAGTGGTTCT
TAGAAAAACTTGGTCACGATGGTTTAAATAAGATGCTCGCTGGATTCGAA
GATAAGTCCGGATACGCGCTCTGCACTTTTGCATACTCAAGCGGAACCGA
AGGTGAGGAGCCTAAGGTTTTTTCTGGGCGTACGTCTGGAAGAATTGTCC
CACCTAGGTCCAAAGCCGACAATGCCTTTGGATGGGATCCTATTTTCGAA
CCTGATGGATTTGAGCAGACTTACGCTGAGATGGATAAATCAGTCAAAAA
TTCAATCTCACATCGATACAGGGCGCTTGAGCTGGTGAAAAAGCACATCG
CTTGCCTAATGGACGATGACAACTAG back to topCoding sequence (CDS) from alignment at NODE_329_length_29763_cov_4.543981:4732..5407+ >Gcaud8612.t1 ID=Gcaud8612.t1|Name=Gcaud8612.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=600bp|location=Sequence derived from alignment at NODE_329_length_29763_cov_4.543981:4732..5407+ (Gracilaria caudata M_176_S67 male)
ATGAAACTGTCCACGATAACATTCGTGACTGGCAATCAAAACAAGTTGCG
GGAAGTTTCGCAAATCCTGGCCTCGGACCCAGACGCAAAATCTGCAATCT
CGATCGTAGCAAAGAAAATTGACCTGCCAGAACTGCAGGGAGAGGTAGAG
GAAATTGCCAAACAGAAATGCGCGCTTGCTGTTAAAGAAGTCGGTGGCCC
CACGTTGGTAGAAGATACCTGTCTGTGCTTTAATGCTCTCAAAGGTTTAC
CAGGCCCATATATAAAGTGGTTCTTAGAAAAACTTGGTCACGATGGTTTA
AATAAGATGCTCGCTGGATTCGAAGATAAGTCCGGATACGCGCTCTGCAC
TTTTGCATACTCAAGCGGAACCGAAGGTGAGGAGCCTAAGGTTTTTTCTG
GGCGTACGTCTGGAAGAATTGTCCCACCTAGGTCCAAAGCCGACAATGCC
TTTGGATGGGATCCTATTTTCGAACCTGATGGATTTGAGCAGACTTACGC
TGAGATGGATAAATCAGTCAAAAATTCAATCTCACATCGATACAGGGCGC
TTGAGCTGGTGAAAAAGCACATCGCTTGCCTAATGGACGATGACAACTAG back to top
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