Gcaud8610.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud8610.t1
Unique Name	Gcaud8610.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	285

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_1955_length_7466_cov_18.630915	contig	NODE_1955_length_7466_cov_18.630915:6180..7034 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	15368.BRADI4G33440.1
PFAMs	Lactamase_B_2
Max annot lvl	35493\|Streptophyta
KEGG ko	ko:K00784
KEGG Pathway	ko03013,map03013
Evalue	3.49e-64
EggNOG OGs	COG1234@1\|root,2QTNW@2759\|Eukaryota,37NC2@33090\|Viridiplantae,3GC4W@35493\|Streptophyta,3KVVA@4447\|Liliopsida,3IBX0@38820\|Poales
EC	3.1.26.11
Description	Beta-lactamase superfamily domain
COG category	S
BRITE	ko00000,ko00001,ko01000,ko03016

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud8610	Gcaud8610	Gracilaria caudata M_176_S67 male	gene	NODE_1955_length_7466_cov_18.630915 6180..7034 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud8610.t1.stop1	Gcaud8610.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_1955_length_7466_cov_18.630915 6180..6182 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud8610.t1.CDS1	Gcaud8610.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_1955_length_7466_cov_18.630915 6180..7034 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud8610.t1.exon1	Gcaud8610.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_1955_length_7466_cov_18.630915 6180..7034 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud8610.t1.start1	Gcaud8610.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_1955_length_7466_cov_18.630915 7032..7034 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud8610.t1	Gcaud8610.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_1955_length_7466_cov_18.630915 6180..7034 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_1955_length_7466_cov_18.630915:6180..7034-
coding sequence from alignment at NODE_1955_length_7466_cov_18.630915:6180..7034-

mRNA sequence

>Gcaud8610.t1 ID=Gcaud8610.t1|Name=Gcaud8610.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=285bp
MHVDRGVPEKINVKGLEICGVSVAAVETCLWIPSLSLAFDSGRCPRGVVG
MRYMAIIHGHCDHIHGLPLHLATRTLQQLPQPRYFVPPAIEGDIRSIKAA
VEKLERCALEMQSVPLKPGVDEEEFKKGWVIRSVQTKHTVPSQGYVVFRK
REKLKKEFVELNGSQLVALKRKDVVIEDVLQTPEIAYTGDTQLEAIRESE
DFRNARILITEMTFIDEACSPSEAAQFGHIHLKEVMEKSDLLKNNEVVIF
THFSARYTKQEIFEALNMLPTELKQKSIAFGIGG*

spliced messenger RNA

>Gcaud8610.t1 ID=Gcaud8610.t1|Name=Gcaud8610.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=855bp|location=Sequence derived from alignment at NODE_1955_length_7466_cov_18.630915:6180..7034- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCATGTGGATAGAGGTGTTCCAGAAAAGATAAATGTGAAAGGACTTGA
GATATGTGGCGTTTCAGTGGCAGCGGTCGAGACTTGCCTTTGGATACCAT
CACTATCACTCGCATTTGATTCCGGTCGTTGTCCAAGAGGTGTAGTGGGC
ATGCGTTACATGGCCATCATACATGGGCATTGCGACCATATTCATGGACT
ACCCCTACATCTAGCCACCAGGACTTTGCAACAGCTCCCACAGCCTCGCT
ATTTTGTCCCACCAGCTATAGAAGGTGATATTCGCAGCATAAAGGCGGCA
GTTGAAAAACTTGAAAGATGTGCTTTGGAGATGCAGTCAGTTCCGCTAAA
ACCAGGCGTTGACGAAGAAGAATTCAAAAAAGGGTGGGTGATCCGATCTG
TCCAAACAAAGCACACAGTTCCATCTCAAGGATATGTAGTCTTTCGCAAA
CGAGAGAAGCTCAAGAAAGAATTTGTAGAATTGAACGGAAGTCAGCTTGT
CGCGTTAAAACGAAAGGATGTTGTAATCGAAGACGTTCTTCAAACACCGG
AGATCGCGTACACCGGTGATACGCAACTTGAAGCGATCAGAGAATCAGAG
GATTTCCGGAATGCTCGTATACTGATCACGGAGATGACTTTTATTGACGA
AGCCTGCTCGCCAAGTGAAGCAGCACAGTTTGGACACATACATCTGAAAG
AGGTTATGGAGAAAAGCGATTTGCTCAAGAACAACGAAGTTGTCATATTC
ACGCATTTCAGCGCTCGATATACGAAGCAGGAAATTTTTGAGGCTTTAAA
TATGCTGCCAACAGAGTTGAAACAGAAGAGTATCGCTTTTGGCATCGGAG
GATGA

protein sequence of Gcaud8610.t1

>Gcaud8610.t1 ID=Gcaud8610.t1|Name=Gcaud8610.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=285bp
MHVDRGVPEKINVKGLEICGVSVAAVETCLWIPSLSLAFDSGRCPRGVVG
MRYMAIIHGHCDHIHGLPLHLATRTLQQLPQPRYFVPPAIEGDIRSIKAA
VEKLERCALEMQSVPLKPGVDEEEFKKGWVIRSVQTKHTVPSQGYVVFRK
REKLKKEFVELNGSQLVALKRKDVVIEDVLQTPEIAYTGDTQLEAIRESE
DFRNARILITEMTFIDEACSPSEAAQFGHIHLKEVMEKSDLLKNNEVVIF
THFSARYTKQEIFEALNMLPTELKQKSIAFGIGG*

mRNA from alignment at NODE_1955_length_7466_cov_18.630915:6180..7034-

Legend: polypeptideCDSexonstart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud8610.t1 ID=Gcaud8610.t1|Name=Gcaud8610.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=855bp|location=Sequence derived from alignment at NODE_1955_length_7466_cov_18.630915:6180..7034- (Gracilaria caudata M_176_S67 male)
ATGCATGTGGATAGAGGTGTTCCAGAAAAGATAAATGTGAAAGGACTTGA
GATATGTGGCGTTTCAGTGGCAGCGGTCGAGACTTGCCTTTGGATACCAT
CACTATCACTCGCATTTGATTCCGGTCGTTGTCCAAGAGGTGTAGTGGGC
ATGCGTTACATGGCCATCATACATGGGCATTGCGACCATATTCATGGACT
ACCCCTACATCTAGCCACCAGGACTTTGCAACAGCTCCCACAGCCTCGCT
ATTTTGTCCCACCAGCTATAGAAGGTGATATTCGCAGCATAAAGGCGGCA
GTTGAAAAACTTGAAAGATGTGCTTTGGAGATGCAGTCAGTTCCGCTAAA
ACCAGGCGTTGACGAAGAAGAATTCAAAAAAGGGTGGGTGATCCGATCTG
TCCAAACAAAGCACACAGTTCCATCTCAAGGATATGTAGTCTTTCGCAAA
CGAGAGAAGCTCAAGAAAGAATTTGTAGAATTGAACGGAAGTCAGCTTGT
CGCGTTAAAACGAAAGGATGTTGTAATCGAAGACGTTCTTCAAACACCGG
AGATCGCGTACACCGGTGATACGCAACTTGAAGCGATCAGAGAATCAGAG
GATTTCCGGAATGCTCGTATACTGATCACGGAGATGACTTTTATTGACGA
AGCCTGCTCGCCAAGTGAAGCAGCACAGTTTGGACACATACATCTGAAAG
AGGTTATGGAGAAAAGCGATTTGCTCAAGAACAACGAAGTTGTCATATTC
ACGCATTTCAGCGCTCGATATACGAAGCAGGAAATTTTTGAGGCTTTAAA
TATGCTGCCAACAGAGTTGAAACAGAAGAGTATCGCTTTTGGCATCGGAG
GATGA

Coding sequence (CDS) from alignment at NODE_1955_length_7466_cov_18.630915:6180..7034-

>Gcaud8610.t1 ID=Gcaud8610.t1|Name=Gcaud8610.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=855bp|location=Sequence derived from alignment at NODE_1955_length_7466_cov_18.630915:6180..7034- (Gracilaria caudata M_176_S67 male)
ATGCATGTGGATAGAGGTGTTCCAGAAAAGATAAATGTGAAAGGACTTGA
GATATGTGGCGTTTCAGTGGCAGCGGTCGAGACTTGCCTTTGGATACCAT
CACTATCACTCGCATTTGATTCCGGTCGTTGTCCAAGAGGTGTAGTGGGC
ATGCGTTACATGGCCATCATACATGGGCATTGCGACCATATTCATGGACT
ACCCCTACATCTAGCCACCAGGACTTTGCAACAGCTCCCACAGCCTCGCT
ATTTTGTCCCACCAGCTATAGAAGGTGATATTCGCAGCATAAAGGCGGCA
GTTGAAAAACTTGAAAGATGTGCTTTGGAGATGCAGTCAGTTCCGCTAAA
ACCAGGCGTTGACGAAGAAGAATTCAAAAAAGGGTGGGTGATCCGATCTG
TCCAAACAAAGCACACAGTTCCATCTCAAGGATATGTAGTCTTTCGCAAA
CGAGAGAAGCTCAAGAAAGAATTTGTAGAATTGAACGGAAGTCAGCTTGT
CGCGTTAAAACGAAAGGATGTTGTAATCGAAGACGTTCTTCAAACACCGG
AGATCGCGTACACCGGTGATACGCAACTTGAAGCGATCAGAGAATCAGAG
GATTTCCGGAATGCTCGTATACTGATCACGGAGATGACTTTTATTGACGA
AGCCTGCTCGCCAAGTGAAGCAGCACAGTTTGGACACATACATCTGAAAG
AGGTTATGGAGAAAAGCGATTTGCTCAAGAACAACGAAGTTGTCATATTC
ACGCATTTCAGCGCTCGATATACGAAGCAGGAAATTTTTGAGGCTTTAAA
TATGCTGCCAACAGAGTTGAAACAGAAGAGTATCGCTTTTGGCATCGGAG
GATGA