Gcaud861.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGcaud861.t1
Unique NameGcaud861.t1
TypemRNA
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length129
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_6474_length_1168_cov_3.550604contigNODE_6474_length_1168_cov_3.550604:2..386 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog38833.XP_003063235.1
PFAMsRibos_L4_asso_C,Ribosomal_L4
Max annot lvl3041|Chlorophyta
KEGG koko:K02930
KEGG Pathwayko03010,map03010
KEGG ModuleM00177,M00179
Evalue2.33e-59
EggNOG OGsCOG0088@1|root,KOG1475@2759|Eukaryota,37JR5@33090|Viridiplantae,34GSZ@3041|Chlorophyta
DescriptionRibosomal protein L4
COG categoryJ
BRITEbr01610,ko00000,ko00001,ko00002,ko03011
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud861Gcaud861Gracilaria caudata M_176_S67 malegeneNODE_6474_length_1168_cov_3.550604 2..386 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud861.t1.CDS1Gcaud861.t1.CDS1Gracilaria caudata M_176_S67 maleCDSNODE_6474_length_1168_cov_3.550604 2..386 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud861.t1.exon1Gcaud861.t1.exon1Gracilaria caudata M_176_S67 maleexonNODE_6474_length_1168_cov_3.550604 2..386 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud861.t1.start1Gcaud861.t1.start1Gracilaria caudata M_176_S67 malestart_codonNODE_6474_length_1168_cov_3.550604 384..386 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud861.t1Gcaud861.t1Gracilaria caudata M_176_S67 malepolypeptideNODE_6474_length_1168_cov_3.550604 2..386 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gcaud861.t1 ID=Gcaud861.t1|Name=Gcaud861.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=129bp
MCRGGRVFAPTKIWRKWHRKVPLNQKRYATVSALAASALPALVMARGHEI
DDVPEVPLVIHDSVQAFNKTAKAVTLLRSLGAYDDVERVMETKNFRAGKG
KMRNRRYKQRRGPLVVYHNDDGIVRAFRX
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spliced messenger RNA

>Gcaud861.t1 ID=Gcaud861.t1|Name=Gcaud861.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=385bp|location=Sequence derived from alignment at NODE_6474_length_1168_cov_3.550604:2..386- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTGTCGCGGAGGACGTGTGTTTGCGCCCACAAAGATCTGGAGAAAATG
GCACCGCAAGGTGCCGTTGAATCAGAAACGATATGCCACTGTTTCGGCGT
TGGCTGCTTCTGCTTTGCCGGCTTTGGTCATGGCGAGGGGACATGAGATT
GATGATGTGCCGGAGGTGCCGCTTGTCATTCATGATTCTGTGCAGGCTTT
TAACAAGACCGCCAAGGCTGTCACCTTGCTCAGGTCGCTGGGCGCTTATG
ATGACGTGGAGCGTGTGATGGAGACCAAGAATTTCCGCGCTGGAAAGGGT
AAGATGCGTAATCGTCGCTATAAACAGCGCCGCGGACCGCTTGTTGTGTA
CCACAATGATGATGGTATTGTCAGGGCCTTCCGCA
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protein sequence of Gcaud861.t1

>Gcaud861.t1 ID=Gcaud861.t1|Name=Gcaud861.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=129bp
MCRGGRVFAPTKIWRKWHRKVPLNQKRYATVSALAASALPALVMARGHEI
DDVPEVPLVIHDSVQAFNKTAKAVTLLRSLGAYDDVERVMETKNFRAGKG
KMRNRRYKQRRGPLVVYHNDDGIVRAFRX
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mRNA from alignment at NODE_6474_length_1168_cov_3.550604:2..386-

Legend: CDSpolypeptideexonstart_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gcaud861.t1 ID=Gcaud861.t1|Name=Gcaud861.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=385bp|location=Sequence derived from alignment at NODE_6474_length_1168_cov_3.550604:2..386- (Gracilaria caudata M_176_S67 male)
ATGTGTCGCGGAGGACGTGTGTTTGCGCCCACAAAGATCTGGAGAAAATG
GCACCGCAAGGTGCCGTTGAATCAGAAACGATATGCCACTGTTTCGGCGT
TGGCTGCTTCTGCTTTGCCGGCTTTGGTCATGGCGAGGGGACATGAGATT
GATGATGTGCCGGAGGTGCCGCTTGTCATTCATGATTCTGTGCAGGCTTT
TAACAAGACCGCCAAGGCTGTCACCTTGCTCAGGTCGCTGGGCGCTTATG
ATGACGTGGAGCGTGTGATGGAGACCAAGAATTTCCGCGCTGGAAAGGGT
AAGATGCGTAATCGTCGCTATAAACAGCGCCGCGGACCGCTTGTTGTGTA
CCACAATGATGATGGTATTGTCAGGGCCTTCCGCA
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Coding sequence (CDS) from alignment at NODE_6474_length_1168_cov_3.550604:2..386-

>Gcaud861.t1 ID=Gcaud861.t1|Name=Gcaud861.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=385bp|location=Sequence derived from alignment at NODE_6474_length_1168_cov_3.550604:2..386- (Gracilaria caudata M_176_S67 male)
ATGTGTCGCGGAGGACGTGTGTTTGCGCCCACAAAGATCTGGAGAAAATG
GCACCGCAAGGTGCCGTTGAATCAGAAACGATATGCCACTGTTTCGGCGT
TGGCTGCTTCTGCTTTGCCGGCTTTGGTCATGGCGAGGGGACATGAGATT
GATGATGTGCCGGAGGTGCCGCTTGTCATTCATGATTCTGTGCAGGCTTT
TAACAAGACCGCCAAGGCTGTCACCTTGCTCAGGTCGCTGGGCGCTTATG
ATGACGTGGAGCGTGTGATGGAGACCAAGAATTTCCGCGCTGGAAAGGGT
AAGATGCGTAATCGTCGCTATAAACAGCGCCGCGGACCGCTTGTTGTGTA
CCACAATGATGATGGTATTGTCAGGGCCTTCCGCA
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