Gcaud8608.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud8608.t1
Unique Name	Gcaud8608.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	501

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_1734_length_8724_cov_3.673346	contig	NODE_1734_length_8724_cov_3.673346:5204..6706 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	1298865.H978DRAFT_0120
PFAMs	Big_2,UnbV_ASPIC,VCBS
Max annot lvl	1236\|Gammaproteobacteria
Evalue	1.06e-40
EggNOG OGs	COG2931@1\|root,COG5492@1\|root,COG2931@2\|Bacteria,COG5492@2\|Bacteria,1R7ZV@1224\|Proteobacteria,1RPUG@1236\|Gammaproteobacteria,464WY@72275\|Alteromonadaceae
Description	ASPIC and UnbV
COG category	NQ

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud8608	Gcaud8608	Gracilaria caudata M_176_S67 male	gene	NODE_1734_length_8724_cov_3.673346 5204..6706 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud8608.t1.start1	Gcaud8608.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_1734_length_8724_cov_3.673346 5204..5206 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud8608.t1.CDS1	Gcaud8608.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_1734_length_8724_cov_3.673346 5204..6706 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud8608.t1.exon1	Gcaud8608.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_1734_length_8724_cov_3.673346 5204..6706 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud8608.t1.stop1	Gcaud8608.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_1734_length_8724_cov_3.673346 6704..6706 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud8608.t1	Gcaud8608.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_1734_length_8724_cov_3.673346 5204..6706 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_1734_length_8724_cov_3.673346:5204..6706+
coding sequence from alignment at NODE_1734_length_8724_cov_3.673346:5204..6706+

mRNA sequence

>Gcaud8608.t1 ID=Gcaud8608.t1|Name=Gcaud8608.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=501bp
MHCILLLATLAVLPFVAAQNNPSFVDVSDAAGLPYNPRKKYASPAIADLD
RDGHPDLLFCHHDNYYAELFFNNGNGGFTRSTWQVWRDNHGIVPVPAAVN
SNKMRFTISPGGNFGRKPSTPLMFEVSPQRTVTDLSSAITDGGGRGRTAI
FMDLSLSHTAFPDVLFMNAPLNDGDPTHFGYENVFGQYKFRTPEGFQYDR
NWYGSPIDVDDDRIMEVVTHYYMLTAYKLVGPWKFRDVTEDIFPPGLGRM
GVVAVAEIDYDNDGDFDLYVARTRSGDLKWVYGDTFYDYLLENVGGRFVD
VTAKARIPRGTLARGVTVADFNNDGWMDVFVTQYIDADIMLLNNGDGTFR
RVDALISRPRNVRGDNAVAFDYDGDGRMDLISSQGDQHTEGEPGNFRLFR
NVMALDNNRRFVKVRVGDSPDGSATALHAVVTIVLGGGAGRRVQRVGSPG
ATISRSYIETLHFGIGSATWVNSFSVTYTTGYTVTRGGAAAGSTVVLGSV
*

spliced messenger RNA

>Gcaud8608.t1 ID=Gcaud8608.t1|Name=Gcaud8608.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1503bp|location=Sequence derived from alignment at NODE_1734_length_8724_cov_3.673346:5204..6706+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCATTGCATTCTGCTGCTGGCAACGCTTGCCGTGTTGCCGTTCGTGGC
CGCGCAGAACAATCCGTCCTTCGTTGACGTGTCCGACGCCGCCGGCTTAC
CGTACAACCCGCGCAAAAAGTACGCCAGTCCAGCCATAGCAGACCTCGAC
CGCGACGGCCACCCCGATCTGCTGTTCTGTCACCACGACAACTACTACGC
GGAGCTCTTCTTCAACAACGGCAACGGCGGCTTCACGCGCTCGACGTGGC
AGGTATGGCGTGACAATCACGGCATTGTGCCCGTGCCCGCCGCCGTCAAC
TCCAACAAGATGAGGTTCACCATCTCCCCGGGCGGCAACTTTGGACGCAA
ACCGTCCACCCCGCTCATGTTCGAAGTGAGCCCGCAGCGCACCGTCACCG
ACCTGTCGTCCGCCATAACGGATGGCGGCGGCCGTGGAAGGACCGCCATT
TTCATGGACTTGTCGTTGTCGCACACCGCCTTTCCGGACGTGTTGTTCAT
GAACGCGCCGCTCAACGACGGCGACCCGACGCACTTTGGCTACGAAAACG
TGTTTGGTCAGTACAAGTTCCGAACGCCCGAGGGCTTTCAGTACGACCGC
AACTGGTACGGATCGCCCATCGACGTGGACGATGACCGTATCATGGAGGT
GGTCACGCACTACTACATGCTCACCGCGTACAAGCTGGTTGGCCCGTGGA
AGTTCCGCGACGTCACCGAAGACATCTTCCCGCCGGGCCTGGGGCGCATG
GGCGTGGTGGCCGTCGCAGAAATCGACTACGACAACGACGGCGACTTTGA
TCTGTACGTGGCGCGCACGCGCTCCGGCGACCTCAAGTGGGTGTACGGCG
ACACGTTCTACGACTACCTGCTGGAAAACGTGGGCGGTCGCTTCGTGGAC
GTCACCGCCAAAGCGCGCATTCCGCGCGGCACGCTGGCGCGCGGTGTGAC
GGTGGCCGATTTCAACAACGACGGCTGGATGGACGTGTTCGTCACCCAGT
ACATCGACGCCGACATCATGTTGCTCAACAACGGCGACGGCACGTTCCGA
AGGGTGGATGCGCTCATCTCGAGACCGCGCAACGTGAGAGGTGACAATGC
AGTGGCGTTTGACTACGACGGCGACGGGCGCATGGACCTCATATCCAGTC
AGGGAGACCAACACACCGAGGGCGAGCCCGGCAATTTCAGACTGTTCCGC
AACGTGATGGCGCTCGACAACAACCGCCGCTTTGTGAAGGTGCGAGTGGG
AGACTCGCCGGACGGCAGCGCCACTGCGCTGCACGCGGTTGTGACGATTG
TGCTGGGCGGCGGCGCTGGACGCAGGGTGCAACGAGTGGGCTCGCCGGGC
GCCACCATCTCCAGGTCGTACATCGAGACGCTGCACTTCGGAATCGGCAG
CGCGACGTGGGTCAACTCGTTTTCCGTCACGTACACAACCGGCTACACGG
TCACTCGCGGCGGCGCGGCGGCAGGAAGCACCGTGGTGCTTGGAAGTGTA
TGA

protein sequence of Gcaud8608.t1

>Gcaud8608.t1 ID=Gcaud8608.t1|Name=Gcaud8608.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=501bp
MHCILLLATLAVLPFVAAQNNPSFVDVSDAAGLPYNPRKKYASPAIADLD
RDGHPDLLFCHHDNYYAELFFNNGNGGFTRSTWQVWRDNHGIVPVPAAVN
SNKMRFTISPGGNFGRKPSTPLMFEVSPQRTVTDLSSAITDGGGRGRTAI
FMDLSLSHTAFPDVLFMNAPLNDGDPTHFGYENVFGQYKFRTPEGFQYDR
NWYGSPIDVDDDRIMEVVTHYYMLTAYKLVGPWKFRDVTEDIFPPGLGRM
GVVAVAEIDYDNDGDFDLYVARTRSGDLKWVYGDTFYDYLLENVGGRFVD
VTAKARIPRGTLARGVTVADFNNDGWMDVFVTQYIDADIMLLNNGDGTFR
RVDALISRPRNVRGDNAVAFDYDGDGRMDLISSQGDQHTEGEPGNFRLFR
NVMALDNNRRFVKVRVGDSPDGSATALHAVVTIVLGGGAGRRVQRVGSPG
ATISRSYIETLHFGIGSATWVNSFSVTYTTGYTVTRGGAAAGSTVVLGSV
*

mRNA from alignment at NODE_1734_length_8724_cov_3.673346:5204..6706+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud8608.t1 ID=Gcaud8608.t1|Name=Gcaud8608.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1503bp|location=Sequence derived from alignment at NODE_1734_length_8724_cov_3.673346:5204..6706+ (Gracilaria caudata M_176_S67 male)
ATGCATTGCATTCTGCTGCTGGCAACGCTTGCCGTGTTGCCGTTCGTGGC
CGCGCAGAACAATCCGTCCTTCGTTGACGTGTCCGACGCCGCCGGCTTAC
CGTACAACCCGCGCAAAAAGTACGCCAGTCCAGCCATAGCAGACCTCGAC
CGCGACGGCCACCCCGATCTGCTGTTCTGTCACCACGACAACTACTACGC
GGAGCTCTTCTTCAACAACGGCAACGGCGGCTTCACGCGCTCGACGTGGC
AGGTATGGCGTGACAATCACGGCATTGTGCCCGTGCCCGCCGCCGTCAAC
TCCAACAAGATGAGGTTCACCATCTCCCCGGGCGGCAACTTTGGACGCAA
ACCGTCCACCCCGCTCATGTTCGAAGTGAGCCCGCAGCGCACCGTCACCG
ACCTGTCGTCCGCCATAACGGATGGCGGCGGCCGTGGAAGGACCGCCATT
TTCATGGACTTGTCGTTGTCGCACACCGCCTTTCCGGACGTGTTGTTCAT
GAACGCGCCGCTCAACGACGGCGACCCGACGCACTTTGGCTACGAAAACG
TGTTTGGTCAGTACAAGTTCCGAACGCCCGAGGGCTTTCAGTACGACCGC
AACTGGTACGGATCGCCCATCGACGTGGACGATGACCGTATCATGGAGGT
GGTCACGCACTACTACATGCTCACCGCGTACAAGCTGGTTGGCCCGTGGA
AGTTCCGCGACGTCACCGAAGACATCTTCCCGCCGGGCCTGGGGCGCATG
GGCGTGGTGGCCGTCGCAGAAATCGACTACGACAACGACGGCGACTTTGA
TCTGTACGTGGCGCGCACGCGCTCCGGCGACCTCAAGTGGGTGTACGGCG
ACACGTTCTACGACTACCTGCTGGAAAACGTGGGCGGTCGCTTCGTGGAC
GTCACCGCCAAAGCGCGCATTCCGCGCGGCACGCTGGCGCGCGGTGTGAC
GGTGGCCGATTTCAACAACGACGGCTGGATGGACGTGTTCGTCACCCAGT
ACATCGACGCCGACATCATGTTGCTCAACAACGGCGACGGCACGTTCCGA
AGGGTGGATGCGCTCATCTCGAGACCGCGCAACGTGAGAGGTGACAATGC
AGTGGCGTTTGACTACGACGGCGACGGGCGCATGGACCTCATATCCAGTC
AGGGAGACCAACACACCGAGGGCGAGCCCGGCAATTTCAGACTGTTCCGC
AACGTGATGGCGCTCGACAACAACCGCCGCTTTGTGAAGGTGCGAGTGGG
AGACTCGCCGGACGGCAGCGCCACTGCGCTGCACGCGGTTGTGACGATTG
TGCTGGGCGGCGGCGCTGGACGCAGGGTGCAACGAGTGGGCTCGCCGGGC
GCCACCATCTCCAGGTCGTACATCGAGACGCTGCACTTCGGAATCGGCAG
CGCGACGTGGGTCAACTCGTTTTCCGTCACGTACACAACCGGCTACACGG
TCACTCGCGGCGGCGCGGCGGCAGGAAGCACCGTGGTGCTTGGAAGTGTA
TGA

Coding sequence (CDS) from alignment at NODE_1734_length_8724_cov_3.673346:5204..6706+

>Gcaud8608.t1 ID=Gcaud8608.t1|Name=Gcaud8608.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1503bp|location=Sequence derived from alignment at NODE_1734_length_8724_cov_3.673346:5204..6706+ (Gracilaria caudata M_176_S67 male)
ATGCATTGCATTCTGCTGCTGGCAACGCTTGCCGTGTTGCCGTTCGTGGC
CGCGCAGAACAATCCGTCCTTCGTTGACGTGTCCGACGCCGCCGGCTTAC
CGTACAACCCGCGCAAAAAGTACGCCAGTCCAGCCATAGCAGACCTCGAC
CGCGACGGCCACCCCGATCTGCTGTTCTGTCACCACGACAACTACTACGC
GGAGCTCTTCTTCAACAACGGCAACGGCGGCTTCACGCGCTCGACGTGGC
AGGTATGGCGTGACAATCACGGCATTGTGCCCGTGCCCGCCGCCGTCAAC
TCCAACAAGATGAGGTTCACCATCTCCCCGGGCGGCAACTTTGGACGCAA
ACCGTCCACCCCGCTCATGTTCGAAGTGAGCCCGCAGCGCACCGTCACCG
ACCTGTCGTCCGCCATAACGGATGGCGGCGGCCGTGGAAGGACCGCCATT
TTCATGGACTTGTCGTTGTCGCACACCGCCTTTCCGGACGTGTTGTTCAT
GAACGCGCCGCTCAACGACGGCGACCCGACGCACTTTGGCTACGAAAACG
TGTTTGGTCAGTACAAGTTCCGAACGCCCGAGGGCTTTCAGTACGACCGC
AACTGGTACGGATCGCCCATCGACGTGGACGATGACCGTATCATGGAGGT
GGTCACGCACTACTACATGCTCACCGCGTACAAGCTGGTTGGCCCGTGGA
AGTTCCGCGACGTCACCGAAGACATCTTCCCGCCGGGCCTGGGGCGCATG
GGCGTGGTGGCCGTCGCAGAAATCGACTACGACAACGACGGCGACTTTGA
TCTGTACGTGGCGCGCACGCGCTCCGGCGACCTCAAGTGGGTGTACGGCG
ACACGTTCTACGACTACCTGCTGGAAAACGTGGGCGGTCGCTTCGTGGAC
GTCACCGCCAAAGCGCGCATTCCGCGCGGCACGCTGGCGCGCGGTGTGAC
GGTGGCCGATTTCAACAACGACGGCTGGATGGACGTGTTCGTCACCCAGT
ACATCGACGCCGACATCATGTTGCTCAACAACGGCGACGGCACGTTCCGA
AGGGTGGATGCGCTCATCTCGAGACCGCGCAACGTGAGAGGTGACAATGC
AGTGGCGTTTGACTACGACGGCGACGGGCGCATGGACCTCATATCCAGTC
AGGGAGACCAACACACCGAGGGCGAGCCCGGCAATTTCAGACTGTTCCGC
AACGTGATGGCGCTCGACAACAACCGCCGCTTTGTGAAGGTGCGAGTGGG
AGACTCGCCGGACGGCAGCGCCACTGCGCTGCACGCGGTTGTGACGATTG
TGCTGGGCGGCGGCGCTGGACGCAGGGTGCAACGAGTGGGCTCGCCGGGC
GCCACCATCTCCAGGTCGTACATCGAGACGCTGCACTTCGGAATCGGCAG
CGCGACGTGGGTCAACTCGTTTTCCGTCACGTACACAACCGGCTACACGG
TCACTCGCGGCGGCGCGGCGGCAGGAAGCACCGTGGTGCTTGGAAGTGTA
TGA