Gcaud8607.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud8607.t1
Unique Name	Gcaud8607.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	506

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_1734_length_8724_cov_3.673346	contig	NODE_1734_length_8724_cov_3.673346:1853..3370 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	1121921.KB898707_gene779
PFAMs	Big_2,UnbV_ASPIC,VCBS
Max annot lvl	1236\|Gammaproteobacteria
Evalue	1.85e-46
EggNOG OGs	COG2931@1\|root,COG5492@1\|root,COG2931@2\|Bacteria,COG5492@2\|Bacteria,1R7ZV@1224\|Proteobacteria,1RPUG@1236\|Gammaproteobacteria
Description	ASPIC and UnbV
COG category	Q

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud8607	Gcaud8607	Gracilaria caudata M_176_S67 male	gene	NODE_1734_length_8724_cov_3.673346 1853..3370 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud8607.t1.stop1	Gcaud8607.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_1734_length_8724_cov_3.673346 1853..1855 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud8607.t1.CDS1	Gcaud8607.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_1734_length_8724_cov_3.673346 1853..3370 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud8607.t1.exon1	Gcaud8607.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_1734_length_8724_cov_3.673346 1853..3370 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud8607.t1.start1	Gcaud8607.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_1734_length_8724_cov_3.673346 3368..3370 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud8607.t1	Gcaud8607.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_1734_length_8724_cov_3.673346 1853..3370 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_1734_length_8724_cov_3.673346:1853..3370-
coding sequence from alignment at NODE_1734_length_8724_cov_3.673346:1853..3370-

mRNA sequence

>Gcaud8607.t1 ID=Gcaud8607.t1|Name=Gcaud8607.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=506bp
MTRCACFALVLHAAALTLCAALTPAFEKVTAQAGLPTNNARKKYGGPTVV
DLDRDGLPDLLFCHHDNYFAEVYYNDGGVFSKGDFSVWRDSHGMVPTPVS
PFTRNMRFSMSVGGSFGAFPTRPEMFEADPSRTIVNITAAAGVDRAGGRG
RTAIYMDLSFDKHAYPDVIFMNAKPLDESPSHYAYQNVDGFYVLRSLPGF
EFDTNWYGTAVDIDGDRVMELVVHYHRLTAYKLVAPFQFEDVTARVFPAG
IERFGVVAIAEIDFDNDGDFDLYVARTKSGDLQWSPGKHFDDYLFRNDGG
VFVDVTDAARIPRGTTARGVTVADFNNDGHVDILVTQYVDDDIMLLNRGD
GTFDRVDSLISRANGVRGDNAQAIDYNDDGMMDVVSSQGDQHDAAFGGNY
ELFRNTMRNEWFSRFLKVRVGNAPDGSATALHATVTVTVGGGERRMMRRV
GTAGAAVSKSYVETVHFGLGTFRFADEVRVVWSSGFVLSRTRKTWHTRTI
TMGAL*

spliced messenger RNA

>Gcaud8607.t1 ID=Gcaud8607.t1|Name=Gcaud8607.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1518bp|location=Sequence derived from alignment at NODE_1734_length_8724_cov_3.673346:1853..3370- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGACGCGTTGTGCTTGCTTTGCGCTTGTGCTGCACGCCGCCGCGCTCAC
GCTGTGCGCGGCGCTCACGCCGGCGTTCGAAAAGGTGACGGCGCAGGCGG
GACTGCCCACAAACAATGCACGAAAAAAGTACGGCGGGCCGACGGTGGTG
GACCTCGACCGCGATGGCTTGCCCGACCTGCTGTTCTGTCACCACGACAA
CTATTTCGCAGAGGTGTATTACAACGACGGCGGCGTGTTTTCGAAGGGCG
ACTTCTCCGTGTGGCGCGACTCGCACGGCATGGTGCCCACGCCCGTTTCG
CCGTTCACGCGCAACATGCGCTTCTCCATGTCGGTGGGCGGCTCGTTTGG
CGCGTTTCCCACGCGCCCGGAGATGTTTGAGGCCGACCCGTCGCGCACCA
TTGTGAACATCACCGCTGCGGCAGGCGTGGATCGCGCGGGCGGACGCGGG
CGAACGGCCATTTACATGGACCTGAGCTTCGACAAGCACGCGTACCCGGA
CGTGATTTTCATGAACGCAAAGCCGTTGGATGAGTCGCCGTCGCACTATG
CGTACCAGAACGTGGACGGCTTCTACGTGCTGCGCTCGCTGCCGGGCTTT
GAGTTTGACACAAATTGGTATGGCACGGCGGTGGATATTGACGGCGATCG
CGTGATGGAGCTGGTGGTGCATTACCACAGACTGACGGCGTACAAGCTGG
TGGCGCCGTTCCAGTTTGAGGATGTGACGGCGCGCGTGTTTCCCGCGGGC
ATCGAGCGCTTTGGGGTGGTGGCGATTGCCGAAATCGACTTTGATAACGA
CGGCGACTTTGACCTGTACGTGGCGCGAACCAAGTCGGGCGACCTGCAAT
GGTCGCCGGGCAAGCACTTTGACGACTACCTGTTCCGCAATGACGGCGGC
GTGTTTGTGGACGTGACGGACGCGGCGCGCATTCCGCGCGGCACCACGGC
GAGGGGGGTGACTGTGGCGGACTTTAACAACGACGGACATGTGGACATTC
TGGTGACGCAGTATGTGGACGACGACATCATGTTGCTCAACCGTGGCGAC
GGTACGTTTGACCGCGTGGACTCGCTCATCTCGAGAGCGAACGGCGTGCG
CGGCGACAATGCGCAGGCAATTGATTACAACGACGACGGTATGATGGACG
TGGTGAGCAGTCAGGGCGATCAACACGACGCTGCGTTTGGTGGCAACTAC
GAACTGTTTCGTAACACGATGCGCAACGAGTGGTTCTCGCGCTTCTTGAA
GGTGCGCGTGGGCAACGCGCCGGACGGCTCGGCTACGGCGCTGCACGCGA
CGGTGACGGTGACGGTGGGAGGAGGGGAACGTCGCATGATGCGACGCGTG
GGCACGGCGGGCGCGGCGGTGTCCAAGTCGTACGTGGAGACGGTGCACTT
TGGTCTGGGCACGTTCCGGTTTGCGGACGAGGTGCGCGTGGTGTGGAGCA
GCGGCTTTGTGCTGAGTCGCACGCGCAAGACGTGGCACACGCGCACCATC
ACGATGGGCGCGCTGTGA

protein sequence of Gcaud8607.t1

>Gcaud8607.t1 ID=Gcaud8607.t1|Name=Gcaud8607.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=506bp
MTRCACFALVLHAAALTLCAALTPAFEKVTAQAGLPTNNARKKYGGPTVV
DLDRDGLPDLLFCHHDNYFAEVYYNDGGVFSKGDFSVWRDSHGMVPTPVS
PFTRNMRFSMSVGGSFGAFPTRPEMFEADPSRTIVNITAAAGVDRAGGRG
RTAIYMDLSFDKHAYPDVIFMNAKPLDESPSHYAYQNVDGFYVLRSLPGF
EFDTNWYGTAVDIDGDRVMELVVHYHRLTAYKLVAPFQFEDVTARVFPAG
IERFGVVAIAEIDFDNDGDFDLYVARTKSGDLQWSPGKHFDDYLFRNDGG
VFVDVTDAARIPRGTTARGVTVADFNNDGHVDILVTQYVDDDIMLLNRGD
GTFDRVDSLISRANGVRGDNAQAIDYNDDGMMDVVSSQGDQHDAAFGGNY
ELFRNTMRNEWFSRFLKVRVGNAPDGSATALHATVTVTVGGGERRMMRRV
GTAGAAVSKSYVETVHFGLGTFRFADEVRVVWSSGFVLSRTRKTWHTRTI
TMGAL*

mRNA from alignment at NODE_1734_length_8724_cov_3.673346:1853..3370-

Legend: polypeptideCDSexonstart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud8607.t1 ID=Gcaud8607.t1|Name=Gcaud8607.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1518bp|location=Sequence derived from alignment at NODE_1734_length_8724_cov_3.673346:1853..3370- (Gracilaria caudata M_176_S67 male)
ATGACGCGTTGTGCTTGCTTTGCGCTTGTGCTGCACGCCGCCGCGCTCAC
GCTGTGCGCGGCGCTCACGCCGGCGTTCGAAAAGGTGACGGCGCAGGCGG
GACTGCCCACAAACAATGCACGAAAAAAGTACGGCGGGCCGACGGTGGTG
GACCTCGACCGCGATGGCTTGCCCGACCTGCTGTTCTGTCACCACGACAA
CTATTTCGCAGAGGTGTATTACAACGACGGCGGCGTGTTTTCGAAGGGCG
ACTTCTCCGTGTGGCGCGACTCGCACGGCATGGTGCCCACGCCCGTTTCG
CCGTTCACGCGCAACATGCGCTTCTCCATGTCGGTGGGCGGCTCGTTTGG
CGCGTTTCCCACGCGCCCGGAGATGTTTGAGGCCGACCCGTCGCGCACCA
TTGTGAACATCACCGCTGCGGCAGGCGTGGATCGCGCGGGCGGACGCGGG
CGAACGGCCATTTACATGGACCTGAGCTTCGACAAGCACGCGTACCCGGA
CGTGATTTTCATGAACGCAAAGCCGTTGGATGAGTCGCCGTCGCACTATG
CGTACCAGAACGTGGACGGCTTCTACGTGCTGCGCTCGCTGCCGGGCTTT
GAGTTTGACACAAATTGGTATGGCACGGCGGTGGATATTGACGGCGATCG
CGTGATGGAGCTGGTGGTGCATTACCACAGACTGACGGCGTACAAGCTGG
TGGCGCCGTTCCAGTTTGAGGATGTGACGGCGCGCGTGTTTCCCGCGGGC
ATCGAGCGCTTTGGGGTGGTGGCGATTGCCGAAATCGACTTTGATAACGA
CGGCGACTTTGACCTGTACGTGGCGCGAACCAAGTCGGGCGACCTGCAAT
GGTCGCCGGGCAAGCACTTTGACGACTACCTGTTCCGCAATGACGGCGGC
GTGTTTGTGGACGTGACGGACGCGGCGCGCATTCCGCGCGGCACCACGGC
GAGGGGGGTGACTGTGGCGGACTTTAACAACGACGGACATGTGGACATTC
TGGTGACGCAGTATGTGGACGACGACATCATGTTGCTCAACCGTGGCGAC
GGTACGTTTGACCGCGTGGACTCGCTCATCTCGAGAGCGAACGGCGTGCG
CGGCGACAATGCGCAGGCAATTGATTACAACGACGACGGTATGATGGACG
TGGTGAGCAGTCAGGGCGATCAACACGACGCTGCGTTTGGTGGCAACTAC
GAACTGTTTCGTAACACGATGCGCAACGAGTGGTTCTCGCGCTTCTTGAA
GGTGCGCGTGGGCAACGCGCCGGACGGCTCGGCTACGGCGCTGCACGCGA
CGGTGACGGTGACGGTGGGAGGAGGGGAACGTCGCATGATGCGACGCGTG
GGCACGGCGGGCGCGGCGGTGTCCAAGTCGTACGTGGAGACGGTGCACTT
TGGTCTGGGCACGTTCCGGTTTGCGGACGAGGTGCGCGTGGTGTGGAGCA
GCGGCTTTGTGCTGAGTCGCACGCGCAAGACGTGGCACACGCGCACCATC
ACGATGGGCGCGCTGTGA

Coding sequence (CDS) from alignment at NODE_1734_length_8724_cov_3.673346:1853..3370-

>Gcaud8607.t1 ID=Gcaud8607.t1|Name=Gcaud8607.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1518bp|location=Sequence derived from alignment at NODE_1734_length_8724_cov_3.673346:1853..3370- (Gracilaria caudata M_176_S67 male)
ATGACGCGTTGTGCTTGCTTTGCGCTTGTGCTGCACGCCGCCGCGCTCAC
GCTGTGCGCGGCGCTCACGCCGGCGTTCGAAAAGGTGACGGCGCAGGCGG
GACTGCCCACAAACAATGCACGAAAAAAGTACGGCGGGCCGACGGTGGTG
GACCTCGACCGCGATGGCTTGCCCGACCTGCTGTTCTGTCACCACGACAA
CTATTTCGCAGAGGTGTATTACAACGACGGCGGCGTGTTTTCGAAGGGCG
ACTTCTCCGTGTGGCGCGACTCGCACGGCATGGTGCCCACGCCCGTTTCG
CCGTTCACGCGCAACATGCGCTTCTCCATGTCGGTGGGCGGCTCGTTTGG
CGCGTTTCCCACGCGCCCGGAGATGTTTGAGGCCGACCCGTCGCGCACCA
TTGTGAACATCACCGCTGCGGCAGGCGTGGATCGCGCGGGCGGACGCGGG
CGAACGGCCATTTACATGGACCTGAGCTTCGACAAGCACGCGTACCCGGA
CGTGATTTTCATGAACGCAAAGCCGTTGGATGAGTCGCCGTCGCACTATG
CGTACCAGAACGTGGACGGCTTCTACGTGCTGCGCTCGCTGCCGGGCTTT
GAGTTTGACACAAATTGGTATGGCACGGCGGTGGATATTGACGGCGATCG
CGTGATGGAGCTGGTGGTGCATTACCACAGACTGACGGCGTACAAGCTGG
TGGCGCCGTTCCAGTTTGAGGATGTGACGGCGCGCGTGTTTCCCGCGGGC
ATCGAGCGCTTTGGGGTGGTGGCGATTGCCGAAATCGACTTTGATAACGA
CGGCGACTTTGACCTGTACGTGGCGCGAACCAAGTCGGGCGACCTGCAAT
GGTCGCCGGGCAAGCACTTTGACGACTACCTGTTCCGCAATGACGGCGGC
GTGTTTGTGGACGTGACGGACGCGGCGCGCATTCCGCGCGGCACCACGGC
GAGGGGGGTGACTGTGGCGGACTTTAACAACGACGGACATGTGGACATTC
TGGTGACGCAGTATGTGGACGACGACATCATGTTGCTCAACCGTGGCGAC
GGTACGTTTGACCGCGTGGACTCGCTCATCTCGAGAGCGAACGGCGTGCG
CGGCGACAATGCGCAGGCAATTGATTACAACGACGACGGTATGATGGACG
TGGTGAGCAGTCAGGGCGATCAACACGACGCTGCGTTTGGTGGCAACTAC
GAACTGTTTCGTAACACGATGCGCAACGAGTGGTTCTCGCGCTTCTTGAA
GGTGCGCGTGGGCAACGCGCCGGACGGCTCGGCTACGGCGCTGCACGCGA
CGGTGACGGTGACGGTGGGAGGAGGGGAACGTCGCATGATGCGACGCGTG
GGCACGGCGGGCGCGGCGGTGTCCAAGTCGTACGTGGAGACGGTGCACTT
TGGTCTGGGCACGTTCCGGTTTGCGGACGAGGTGCGCGTGGTGTGGAGCA
GCGGCTTTGTGCTGAGTCGCACGCGCAAGACGTGGCACACGCGCACCATC
ACGATGGGCGCGCTGTGA