Gcaud8606.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGcaud8606.t1
Unique NameGcaud8606.t1
TypemRNA
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length131
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_7549_length_897_cov_7.498759contigNODE_7549_length_897_cov_7.498759:325..717 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud8606Gcaud8606Gracilaria caudata M_176_S67 malegeneNODE_7549_length_897_cov_7.498759 325..717 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud8606.t1.start1Gcaud8606.t1.start1Gracilaria caudata M_176_S67 malestart_codonNODE_7549_length_897_cov_7.498759 325..327 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud8606.t1.CDS1Gcaud8606.t1.CDS1Gracilaria caudata M_176_S67 maleCDSNODE_7549_length_897_cov_7.498759 325..717 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud8606.t1.exon1Gcaud8606.t1.exon1Gracilaria caudata M_176_S67 maleexonNODE_7549_length_897_cov_7.498759 325..717 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud8606.t1.stop1Gcaud8606.t1.stop1Gracilaria caudata M_176_S67 malestop_codonNODE_7549_length_897_cov_7.498759 715..717 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud8606.t1Gcaud8606.t1Gracilaria caudata M_176_S67 malepolypeptideNODE_7549_length_897_cov_7.498759 325..717 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gcaud8606.t1 ID=Gcaud8606.t1|Name=Gcaud8606.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=131bp
MASSNEYRAIPVGEHPSLSQLSSSGGKKTWTYIIGAVLLVVSTALVTAHV
TTGQYQHVAPYGASSVSAYAPARFFDKYRAAKATGGLIHDEEFLNMARGV
VEEICSSITYVACRYSGAQDTDWCKICKYQ*
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spliced messenger RNA

>Gcaud8606.t1 ID=Gcaud8606.t1|Name=Gcaud8606.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=393bp|location=Sequence derived from alignment at NODE_7549_length_897_cov_7.498759:325..717+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCATCCTCCAATGAATACCGTGCCATTCCTGTTGGCGAGCATCCCAG
CCTCTCCCAGCTTTCTTCCTCTGGCGGCAAGAAGACATGGACATACATCA
TTGGCGCCGTTTTGCTGGTGGTCAGCACTGCTCTGGTCACAGCCCACGTG
ACCACCGGCCAGTACCAGCATGTCGCGCCCTATGGGGCGAGTAGCGTCTC
CGCCTACGCTCCGGCTCGCTTTTTTGACAAGTACAGAGCAGCGAAGGCCA
CCGGCGGTCTTATTCACGACGAAGAATTTCTGAACATGGCCCGTGGTGTG
GTCGAGGAGATATGCTCATCAATCACGTATGTGGCTTGTCGTTACAGCGG
GGCTCAGGACACGGACTGGTGCAAGATCTGCAAGTACCAGTAG
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protein sequence of Gcaud8606.t1

>Gcaud8606.t1 ID=Gcaud8606.t1|Name=Gcaud8606.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=131bp
MASSNEYRAIPVGEHPSLSQLSSSGGKKTWTYIIGAVLLVVSTALVTAHV
TTGQYQHVAPYGASSVSAYAPARFFDKYRAAKATGGLIHDEEFLNMARGV
VEEICSSITYVACRYSGAQDTDWCKICKYQ*
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mRNA from alignment at NODE_7549_length_897_cov_7.498759:325..717+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gcaud8606.t1 ID=Gcaud8606.t1|Name=Gcaud8606.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=393bp|location=Sequence derived from alignment at NODE_7549_length_897_cov_7.498759:325..717+ (Gracilaria caudata M_176_S67 male)
ATGGCATCCTCCAATGAATACCGTGCCATTCCTGTTGGCGAGCATCCCAG
CCTCTCCCAGCTTTCTTCCTCTGGCGGCAAGAAGACATGGACATACATCA
TTGGCGCCGTTTTGCTGGTGGTCAGCACTGCTCTGGTCACAGCCCACGTG
ACCACCGGCCAGTACCAGCATGTCGCGCCCTATGGGGCGAGTAGCGTCTC
CGCCTACGCTCCGGCTCGCTTTTTTGACAAGTACAGAGCAGCGAAGGCCA
CCGGCGGTCTTATTCACGACGAAGAATTTCTGAACATGGCCCGTGGTGTG
GTCGAGGAGATATGCTCATCAATCACGTATGTGGCTTGTCGTTACAGCGG
GGCTCAGGACACGGACTGGTGCAAGATCTGCAAGTACCAGTAG
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Coding sequence (CDS) from alignment at NODE_7549_length_897_cov_7.498759:325..717+

>Gcaud8606.t1 ID=Gcaud8606.t1|Name=Gcaud8606.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=393bp|location=Sequence derived from alignment at NODE_7549_length_897_cov_7.498759:325..717+ (Gracilaria caudata M_176_S67 male)
ATGGCATCCTCCAATGAATACCGTGCCATTCCTGTTGGCGAGCATCCCAG
CCTCTCCCAGCTTTCTTCCTCTGGCGGCAAGAAGACATGGACATACATCA
TTGGCGCCGTTTTGCTGGTGGTCAGCACTGCTCTGGTCACAGCCCACGTG
ACCACCGGCCAGTACCAGCATGTCGCGCCCTATGGGGCGAGTAGCGTCTC
CGCCTACGCTCCGGCTCGCTTTTTTGACAAGTACAGAGCAGCGAAGGCCA
CCGGCGGTCTTATTCACGACGAAGAATTTCTGAACATGGCCCGTGGTGTG
GTCGAGGAGATATGCTCATCAATCACGTATGTGGCTTGTCGTTACAGCGG
GGCTCAGGACACGGACTGGTGCAAGATCTGCAAGTACCAGTAG
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