Gcaud8601.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGcaud8601.t1
Unique NameGcaud8601.t1
TypemRNA
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length219
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_2089_length_6892_cov_4.288340contigNODE_2089_length_6892_cov_4.288340:3843..4706 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog4896.SPBC1289.03c.1
Preferred nameGSP1
PFAMsRas
Max annot lvl4751|Fungi
KEGG koko:K07936
KEGG Pathwayko03008,ko03013,ko05166,ko05169,map03008,map03013,map05166,map05169
GOsGO:0000054,GO:0000166,GO:0000459,GO:0000460,GO:0000466,GO:0000467,GO:0000469,GO:0001882,GO:0001883,GO:0003674,GO:0003824,GO:0003924,GO:0005085,GO:0005087,GO:0005088,GO:0005488,GO:0005515,GO:0005525,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005829,GO:0006139,GO:0006355,GO:0006364,GO:0006396,GO:0006403,GO:0006405,GO:0006406,GO:0006606,GO:0006611,GO:0006725,GO:0006807,GO:0006810,GO:0006886,GO:0006913,GO:0006996,GO:0006997,GO:0007346,GO:0008104,GO:0008150,GO:0008152,GO:0008536,GO:0009889,GO:0009987,GO:0010389,GO:0010467,GO:0010468,GO:0010556,GO:0010564,GO:0010948,GO:0010972,GO:0015031,GO:0015833,GO:0015931,GO:0016020,GO:0016021,GO:0016043,GO:0016070,GO:0016072,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016973,GO:0017016,GO:0017038,GO:0017076,GO:0017111,GO:0019001,GO:0019219,GO:0019222,GO:0019899,GO:0022613,GO:0023052,GO:0031123,GO:0031125,GO:0031224,GO:0031267,GO:0031323,GO:0031326,GO:0031503,GO:0031935,GO:0031938,GO:0032549,GO:0032550,GO:0032553,GO:0032555,GO:0032561,GO:0033036,GO:0033043,GO:0033044,GO:0033365,GO:0033750,GO:0034470,GO:0034504,GO:0034613,GO:0034641,GO:0034660,GO:0035639,GO:0036094,GO:0042254,GO:0042886,GO:0043167,GO:0043168,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043628,GO:0044085,GO:0044237,GO:0044238,GO:0044424,GO:0044425,GO:0044444,GO:0044464,GO:0045184,GO:0045786,GO:0045930,GO:0046483,GO:0046907,GO:0048519,GO:0048523,GO:0050657,GO:0050658,GO:0050789,GO:0050794,GO:0051020,GO:0051028,GO:0051128,GO:0051168,GO:0051169,GO:0051170,GO:0051171,GO:0051179,GO:0051234,GO:0051236,GO:0051252,GO:0051640,GO:0051641,GO:0051649,GO:0051656,GO:0051726,GO:0060255,GO:0060968,GO:0065007,GO:0065009,GO:0070727,GO:0071166,GO:0071426,GO:0071427,GO:0071428,GO:0071702,GO:0071704,GO:0071705,GO:0071840,GO:0072594,GO:0080090,GO:0090304,GO:0090305,GO:0090501,GO:0090503,GO:0097159,GO:0097367,GO:0098772,GO:1901265,GO:1901360,GO:1901363,GO:1901987,GO:1901988,GO:1901990,GO:1901991,GO:1902275,GO:1902749,GO:1902750,GO:1903506,GO:2000112,GO:2001141
Evalue1.17e-119
EggNOG OGsKOG0096@1|root,KOG0096@2759|Eukaryota,38BBN@33154|Opisthokonta,3NW2J@4751|Fungi,3QPIC@4890|Ascomycota,3MBMP@451866|Taphrinomycotina
DescriptionGTP-binding protein involved in nucleocytoplasmic transport. Required for the import of protein into the nucleus and also for RNA export. Involved in chromatin condensation and control of cell cycle
COG categoryU
BRITEko00000,ko00001,ko03009,ko03016,ko03019,ko03036,ko04031,ko04147
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud8601Gcaud8601Gracilaria caudata M_176_S67 malegeneNODE_2089_length_6892_cov_4.288340 3843..4706 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud8601.t1Gcaud8601.t1Gracilaria caudata M_176_S67 malepolypeptideNODE_2089_length_6892_cov_4.288340 3843..4706 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud8601.t1.stop1Gcaud8601.t1.stop1Gracilaria caudata M_176_S67 malestop_codonNODE_2089_length_6892_cov_4.288340 3843..3845 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud8601.t1.CDS1Gcaud8601.t1.CDS1Gracilaria caudata M_176_S67 maleCDSNODE_2089_length_6892_cov_4.288340 3843..4257 -
Gcaud8601.t1.CDS2Gcaud8601.t1.CDS2Gracilaria caudata M_176_S67 maleCDSNODE_2089_length_6892_cov_4.288340 4465..4706 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud8601.t1.exon1Gcaud8601.t1.exon1Gracilaria caudata M_176_S67 maleexonNODE_2089_length_6892_cov_4.288340 3843..4257 -
Gcaud8601.t1.exon2Gcaud8601.t1.exon2Gracilaria caudata M_176_S67 maleexonNODE_2089_length_6892_cov_4.288340 4465..4706 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud8601.t1.intron1Gcaud8601.t1.intron1Gracilaria caudata M_176_S67 maleintronNODE_2089_length_6892_cov_4.288340 4258..4464 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud8601.t1.start1Gcaud8601.t1.start1Gracilaria caudata M_176_S67 malestart_codonNODE_2089_length_6892_cov_4.288340 4704..4706 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gcaud8601.t1 ID=Gcaud8601.t1|Name=Gcaud8601.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=219bp
MAQNQPQNIPTFKVVLVGDGGVGKTTFVKRHITGEFEKRYLATMGVEVHP
LKFSTNFGPILMNVWDTAGQEKLGGLRDGYYIQGNAAIIMFDVTSRMTYK
NVPQWHRDLVRVCENIPIVLCGNKVDIKDRKVKAKSITFHRKKSLQYYEL
SAKSNYNFEKPFLWIARKLIGNPSVVFTEALALQPPEITISQDQVAQIEK
DIADVSQVPLPDEDDNDM*
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spliced messenger RNA

>Gcaud8601.t1 ID=Gcaud8601.t1|Name=Gcaud8601.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=657bp|location=Sequence derived from alignment at NODE_2089_length_6892_cov_4.288340:3843..4706- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCCCAAAACCAACCCCAGAATATCCCCACCTTCAAGGTTGTGCTTGT
CGGAGATGGAGGTGTCGGCAAGACAACGTTTGTCAAGAGGCATATCACCG
GTGAATTTGAGAAGCGTTATCTGGCTACCATGGGCGTCGAAGTACATCCA
CTCAAGTTCTCAACAAATTTTGGCCCCATCCTCATGAACGTGTGGGATAC
CGCCGGACAAGAAAAGCTTGGTGGCCTTCGTGATGGTTACTACATTCAGG
GAAATGCAGCAATCATTATGTTTGACGTTACTTCTCGTATGACGTACAAG
AATGTTCCGCAATGGCATCGCGATCTCGTGAGAGTGTGCGAGAATATCCC
CATTGTGCTGTGCGGTAACAAGGTGGACATAAAGGACCGTAAGGTGAAGG
CAAAGAGCATCACCTTCCATCGGAAAAAGTCGCTTCAGTACTACGAGCTT
AGCGCGAAGAGCAACTACAACTTCGAAAAACCCTTCCTCTGGATTGCTCG
CAAGCTCATCGGCAACCCGTCTGTCGTGTTCACCGAAGCTCTTGCACTCC
AACCGCCTGAGATCACCATTTCCCAAGATCAGGTCGCCCAGATCGAGAAG
GACATTGCGGACGTCAGCCAAGTTCCTCTGCCCGACGAAGACGACAACGA
TATGTAA
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protein sequence of Gcaud8601.t1

>Gcaud8601.t1 ID=Gcaud8601.t1|Name=Gcaud8601.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=219bp
MAQNQPQNIPTFKVVLVGDGGVGKTTFVKRHITGEFEKRYLATMGVEVHP
LKFSTNFGPILMNVWDTAGQEKLGGLRDGYYIQGNAAIIMFDVTSRMTYK
NVPQWHRDLVRVCENIPIVLCGNKVDIKDRKVKAKSITFHRKKSLQYYEL
SAKSNYNFEKPFLWIARKLIGNPSVVFTEALALQPPEITISQDQVAQIEK
DIADVSQVPLPDEDDNDM*
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mRNA from alignment at NODE_2089_length_6892_cov_4.288340:3843..4706-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gcaud8601.t1 ID=Gcaud8601.t1|Name=Gcaud8601.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=864bp|location=Sequence derived from alignment at NODE_2089_length_6892_cov_4.288340:3843..4706- (Gracilaria caudata M_176_S67 male)
ATGGCCCAAAACCAACCCCAGAATATCCCCACCTTCAAGGTTGTGCTTGT
CGGAGATGGAGGTGTCGGCAAGACAACGTTTGTCAAGAGGCATATCACCG
GTGAATTTGAGAAGCGTTATCTGGCTACCATGGGCGTCGAAGTACATCCA
CTCAAGTTCTCAACAAATTTTGGCCCCATCCTCATGAACGTGTGGGATAC
CGCCGGACAAGAAAAGCTTGGTGGCCTTCGTGATGGTTACTAGTAAGTTC
ACGTTTCACATTCTCACCTACCTGCACATGATGAAGTCTTGAGCTTTATG
GCTCGTGCCGCTATGCGAGTCACTTCGTTGCGCGCATCTTAAACCTCCTA
TTCATTCTGAAGCGCAGCTCACGTGCTTATCTTCCAAATCGTCGTCAGGA
ACGCTAACCTCTCTTTTCGTGCACATCTGTTTCATTTGCTCTGTCATAGC
ATTCAGGGAAATGCAGCAATCATTATGTTTGACGTTACTTCTCGTATGAC
GTACAAGAATGTTCCGCAATGGCATCGCGATCTCGTGAGAGTGTGCGAGA
ATATCCCCATTGTGCTGTGCGGTAACAAGGTGGACATAAAGGACCGTAAG
GTGAAGGCAAAGAGCATCACCTTCCATCGGAAAAAGTCGCTTCAGTACTA
CGAGCTTAGCGCGAAGAGCAACTACAACTTCGAAAAACCCTTCCTCTGGA
TTGCTCGCAAGCTCATCGGCAACCCGTCTGTCGTGTTCACCGAAGCTCTT
GCACTCCAACCGCCTGAGATCACCATTTCCCAAGATCAGGTCGCCCAGAT
CGAGAAGGACATTGCGGACGTCAGCCAAGTTCCTCTGCCCGACGAAGACG
ACAACGATATGTAA
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Coding sequence (CDS) from alignment at NODE_2089_length_6892_cov_4.288340:3843..4706-

>Gcaud8601.t1 ID=Gcaud8601.t1|Name=Gcaud8601.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=657bp|location=Sequence derived from alignment at NODE_2089_length_6892_cov_4.288340:3843..4706- (Gracilaria caudata M_176_S67 male)
ATGGCCCAAAACCAACCCCAGAATATCCCCACCTTCAAGGTTGTGCTTGT
CGGAGATGGAGGTGTCGGCAAGACAACGTTTGTCAAGAGGCATATCACCG
GTGAATTTGAGAAGCGTTATCTGGCTACCATGGGCGTCGAAGTACATCCA
CTCAAGTTCTCAACAAATTTTGGCCCCATCCTCATGAACGTGTGGGATAC
CGCCGGACAAGAAAAGCTTGGTGGCCTTCGTGATGGTTACTACATTCAGG
GAAATGCAGCAATCATTATGTTTGACGTTACTTCTCGTATGACGTACAAG
AATGTTCCGCAATGGCATCGCGATCTCGTGAGAGTGTGCGAGAATATCCC
CATTGTGCTGTGCGGTAACAAGGTGGACATAAAGGACCGTAAGGTGAAGG
CAAAGAGCATCACCTTCCATCGGAAAAAGTCGCTTCAGTACTACGAGCTT
AGCGCGAAGAGCAACTACAACTTCGAAAAACCCTTCCTCTGGATTGCTCG
CAAGCTCATCGGCAACCCGTCTGTCGTGTTCACCGAAGCTCTTGCACTCC
AACCGCCTGAGATCACCATTTCCCAAGATCAGGTCGCCCAGATCGAGAAG
GACATTGCGGACGTCAGCCAAGTTCCTCTGCCCGACGAAGACGACAACGA
TATGTAA
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