Gcaud8571.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGcaud8571.t1
Unique NameGcaud8571.t1
TypemRNA
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length236
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_15_length_84509_cov_4.337096contigNODE_15_length_84509_cov_4.337096:44212..44919 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog3827.XP_004498798.1
PFAMsGSHPx
Max annot lvl35493|Streptophyta
KEGG rclassRC00011,RC00982
KEGG koko:K00432
KEGG ReactionR00274,R07034,R07035
KEGG Pathwayko00480,ko00590,ko04918,map00480,map00590,map04918
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0008150,GO:0009507,GO:0009526,GO:0009532,GO:0009534,GO:0009535,GO:0009536,GO:0009570,GO:0009579,GO:0009628,GO:0009941,GO:0016020,GO:0031967,GO:0031975,GO:0031976,GO:0031984,GO:0034357,GO:0042651,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044422,GO:0044424,GO:0044434,GO:0044435,GO:0044436,GO:0044444,GO:0044446,GO:0044464,GO:0050896,GO:0055035,GO:0080167
Evalue6.58e-18
EggNOG OGsCOG0386@1|root,KOG1651@2759|Eukaryota,37K04@33090|Viridiplantae,3G9CQ@35493|Streptophyta,4JEE8@91835|fabids
EC1.11.1.9
DescriptionBelongs to the glutathione peroxidase family
COG categoryO
BRITEko00000,ko00001,ko01000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud8571Gcaud8571Gracilaria caudata M_176_S67 malegeneNODE_15_length_84509_cov_4.337096 44212..44919 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud8571.t1.stop1Gcaud8571.t1.stop1Gracilaria caudata M_176_S67 malestop_codonNODE_15_length_84509_cov_4.337096 44212..44214 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud8571.t1.CDS1Gcaud8571.t1.CDS1Gracilaria caudata M_176_S67 maleCDSNODE_15_length_84509_cov_4.337096 44212..44919 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud8571.t1.exon1Gcaud8571.t1.exon1Gracilaria caudata M_176_S67 maleexonNODE_15_length_84509_cov_4.337096 44212..44919 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud8571.t1.start1Gcaud8571.t1.start1Gracilaria caudata M_176_S67 malestart_codonNODE_15_length_84509_cov_4.337096 44917..44919 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud8571.t1Gcaud8571.t1Gracilaria caudata M_176_S67 malepolypeptideNODE_15_length_84509_cov_4.337096 44212..44919 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gcaud8571.t1 ID=Gcaud8571.t1|Name=Gcaud8571.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=236bp
MAAFSPSLASNSFLNRSTLSGTCRRSNPRIYRPTRTVPTALRMRRGATPD
PRIPPSLFEADPIRDIDFEPFDFSALKGKVVFVVNVASEDSRTDENYRMI
SDLLEDYHGSGLEVLAFPSNWYGQKETRPLKEIKKFVYEKYNKNIKLFSK
TDLEWNQIFALGCYYFPGEIIWNFHGKFLFNRNGVPVGRYDLLTTYQFLH
DEIGAQISGGYEVEPRVISENTDDDCDISEFVTIE*
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spliced messenger RNA

>Gcaud8571.t1 ID=Gcaud8571.t1|Name=Gcaud8571.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=708bp|location=Sequence derived from alignment at NODE_15_length_84509_cov_4.337096:44212..44919- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCTGCCTTCAGCCCATCACTTGCATCCAACAGCTTTTTGAATAGGAG
CACACTGAGCGGCACCTGTCGCCGTTCTAACCCGAGAATATATCGACCCA
CCCGAACAGTGCCGACAGCTTTACGAATGAGGCGAGGAGCCACGCCTGAC
CCGAGAATCCCGCCATCTCTGTTCGAAGCAGATCCAATACGAGACATTGA
TTTTGAACCGTTCGACTTCTCCGCTCTGAAGGGGAAGGTGGTATTCGTCG
TAAACGTGGCTTCGGAAGACTCTCGCACCGACGAAAACTACAGGATGATA
TCGGACCTGCTCGAAGACTATCATGGATCAGGGCTGGAGGTGTTGGCGTT
TCCCAGCAACTGGTATGGGCAAAAGGAAACACGTCCGTTGAAGGAAATAA
AAAAGTTCGTGTACGAGAAGTATAACAAGAACATTAAGCTCTTCTCGAAG
ACAGATTTGGAGTGGAATCAGATATTCGCTCTTGGTTGTTACTATTTTCC
AGGCGAGATCATTTGGAACTTTCACGGAAAATTCTTGTTCAACAGGAATG
GCGTTCCTGTCGGACGATATGACCTGCTCACCACTTATCAGTTTCTGCAT
GATGAAATAGGTGCGCAGATAAGTGGCGGGTACGAAGTGGAACCTCGAGT
GATATCCGAAAACACAGATGACGATTGCGATATTTCGGAATTTGTGACTA
TTGAATGA
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protein sequence of Gcaud8571.t1

>Gcaud8571.t1 ID=Gcaud8571.t1|Name=Gcaud8571.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=236bp
MAAFSPSLASNSFLNRSTLSGTCRRSNPRIYRPTRTVPTALRMRRGATPD
PRIPPSLFEADPIRDIDFEPFDFSALKGKVVFVVNVASEDSRTDENYRMI
SDLLEDYHGSGLEVLAFPSNWYGQKETRPLKEIKKFVYEKYNKNIKLFSK
TDLEWNQIFALGCYYFPGEIIWNFHGKFLFNRNGVPVGRYDLLTTYQFLH
DEIGAQISGGYEVEPRVISENTDDDCDISEFVTIE*
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mRNA from alignment at NODE_15_length_84509_cov_4.337096:44212..44919-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gcaud8571.t1 ID=Gcaud8571.t1|Name=Gcaud8571.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=708bp|location=Sequence derived from alignment at NODE_15_length_84509_cov_4.337096:44212..44919- (Gracilaria caudata M_176_S67 male)
ATGGCTGCCTTCAGCCCATCACTTGCATCCAACAGCTTTTTGAATAGGAG
CACACTGAGCGGCACCTGTCGCCGTTCTAACCCGAGAATATATCGACCCA
CCCGAACAGTGCCGACAGCTTTACGAATGAGGCGAGGAGCCACGCCTGAC
CCGAGAATCCCGCCATCTCTGTTCGAAGCAGATCCAATACGAGACATTGA
TTTTGAACCGTTCGACTTCTCCGCTCTGAAGGGGAAGGTGGTATTCGTCG
TAAACGTGGCTTCGGAAGACTCTCGCACCGACGAAAACTACAGGATGATA
TCGGACCTGCTCGAAGACTATCATGGATCAGGGCTGGAGGTGTTGGCGTT
TCCCAGCAACTGGTATGGGCAAAAGGAAACACGTCCGTTGAAGGAAATAA
AAAAGTTCGTGTACGAGAAGTATAACAAGAACATTAAGCTCTTCTCGAAG
ACAGATTTGGAGTGGAATCAGATATTCGCTCTTGGTTGTTACTATTTTCC
AGGCGAGATCATTTGGAACTTTCACGGAAAATTCTTGTTCAACAGGAATG
GCGTTCCTGTCGGACGATATGACCTGCTCACCACTTATCAGTTTCTGCAT
GATGAAATAGGTGCGCAGATAAGTGGCGGGTACGAAGTGGAACCTCGAGT
GATATCCGAAAACACAGATGACGATTGCGATATTTCGGAATTTGTGACTA
TTGAATGA
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Coding sequence (CDS) from alignment at NODE_15_length_84509_cov_4.337096:44212..44919-

>Gcaud8571.t1 ID=Gcaud8571.t1|Name=Gcaud8571.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=708bp|location=Sequence derived from alignment at NODE_15_length_84509_cov_4.337096:44212..44919- (Gracilaria caudata M_176_S67 male)
ATGGCTGCCTTCAGCCCATCACTTGCATCCAACAGCTTTTTGAATAGGAG
CACACTGAGCGGCACCTGTCGCCGTTCTAACCCGAGAATATATCGACCCA
CCCGAACAGTGCCGACAGCTTTACGAATGAGGCGAGGAGCCACGCCTGAC
CCGAGAATCCCGCCATCTCTGTTCGAAGCAGATCCAATACGAGACATTGA
TTTTGAACCGTTCGACTTCTCCGCTCTGAAGGGGAAGGTGGTATTCGTCG
TAAACGTGGCTTCGGAAGACTCTCGCACCGACGAAAACTACAGGATGATA
TCGGACCTGCTCGAAGACTATCATGGATCAGGGCTGGAGGTGTTGGCGTT
TCCCAGCAACTGGTATGGGCAAAAGGAAACACGTCCGTTGAAGGAAATAA
AAAAGTTCGTGTACGAGAAGTATAACAAGAACATTAAGCTCTTCTCGAAG
ACAGATTTGGAGTGGAATCAGATATTCGCTCTTGGTTGTTACTATTTTCC
AGGCGAGATCATTTGGAACTTTCACGGAAAATTCTTGTTCAACAGGAATG
GCGTTCCTGTCGGACGATATGACCTGCTCACCACTTATCAGTTTCTGCAT
GATGAAATAGGTGCGCAGATAAGTGGCGGGTACGAAGTGGAACCTCGAGT
GATATCCGAAAACACAGATGACGATTGCGATATTTCGGAATTTGTGACTA
TTGAATGA
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