Gcaud8571.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud8571.t1
Unique Name	Gcaud8571.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	236

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_15_length_84509_cov_4.337096	contig	NODE_15_length_84509_cov_4.337096:44212..44919 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	3827.XP_004498798.1
PFAMs	GSHPx
Max annot lvl	35493\|Streptophyta
KEGG rclass	RC00011,RC00982
KEGG ko	ko:K00432
KEGG Reaction	R00274,R07034,R07035
KEGG Pathway	ko00480,ko00590,ko04918,map00480,map00590,map04918
GOs	GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0008150,GO:0009507,GO:0009526,GO:0009532,GO:0009534,GO:0009535,GO:0009536,GO:0009570,GO:0009579,GO:0009628,GO:0009941,GO:0016020,GO:0031967,GO:0031975,GO:0031976,GO:0031984,GO:0034357,GO:0042651,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044422,GO:0044424,GO:0044434,GO:0044435,GO:0044436,GO:0044444,GO:0044446,GO:0044464,GO:0050896,GO:0055035,GO:0080167
Evalue	6.58e-18
EggNOG OGs	COG0386@1\|root,KOG1651@2759\|Eukaryota,37K04@33090\|Viridiplantae,3G9CQ@35493\|Streptophyta,4JEE8@91835\|fabids
EC	1.11.1.9
Description	Belongs to the glutathione peroxidase family
COG category	O
BRITE	ko00000,ko00001,ko01000

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud8571	Gcaud8571	Gracilaria caudata M_176_S67 male	gene	NODE_15_length_84509_cov_4.337096 44212..44919 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud8571.t1.stop1	Gcaud8571.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_15_length_84509_cov_4.337096 44212..44214 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud8571.t1.CDS1	Gcaud8571.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_15_length_84509_cov_4.337096 44212..44919 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud8571.t1.exon1	Gcaud8571.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_15_length_84509_cov_4.337096 44212..44919 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud8571.t1.start1	Gcaud8571.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_15_length_84509_cov_4.337096 44917..44919 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud8571.t1	Gcaud8571.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_15_length_84509_cov_4.337096 44212..44919 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_15_length_84509_cov_4.337096:44212..44919-
coding sequence from alignment at NODE_15_length_84509_cov_4.337096:44212..44919-

mRNA sequence

>Gcaud8571.t1 ID=Gcaud8571.t1|Name=Gcaud8571.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=236bp
MAAFSPSLASNSFLNRSTLSGTCRRSNPRIYRPTRTVPTALRMRRGATPD
PRIPPSLFEADPIRDIDFEPFDFSALKGKVVFVVNVASEDSRTDENYRMI
SDLLEDYHGSGLEVLAFPSNWYGQKETRPLKEIKKFVYEKYNKNIKLFSK
TDLEWNQIFALGCYYFPGEIIWNFHGKFLFNRNGVPVGRYDLLTTYQFLH
DEIGAQISGGYEVEPRVISENTDDDCDISEFVTIE*

spliced messenger RNA

>Gcaud8571.t1 ID=Gcaud8571.t1|Name=Gcaud8571.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=708bp|location=Sequence derived from alignment at NODE_15_length_84509_cov_4.337096:44212..44919- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCTGCCTTCAGCCCATCACTTGCATCCAACAGCTTTTTGAATAGGAG
CACACTGAGCGGCACCTGTCGCCGTTCTAACCCGAGAATATATCGACCCA
CCCGAACAGTGCCGACAGCTTTACGAATGAGGCGAGGAGCCACGCCTGAC
CCGAGAATCCCGCCATCTCTGTTCGAAGCAGATCCAATACGAGACATTGA
TTTTGAACCGTTCGACTTCTCCGCTCTGAAGGGGAAGGTGGTATTCGTCG
TAAACGTGGCTTCGGAAGACTCTCGCACCGACGAAAACTACAGGATGATA
TCGGACCTGCTCGAAGACTATCATGGATCAGGGCTGGAGGTGTTGGCGTT
TCCCAGCAACTGGTATGGGCAAAAGGAAACACGTCCGTTGAAGGAAATAA
AAAAGTTCGTGTACGAGAAGTATAACAAGAACATTAAGCTCTTCTCGAAG
ACAGATTTGGAGTGGAATCAGATATTCGCTCTTGGTTGTTACTATTTTCC
AGGCGAGATCATTTGGAACTTTCACGGAAAATTCTTGTTCAACAGGAATG
GCGTTCCTGTCGGACGATATGACCTGCTCACCACTTATCAGTTTCTGCAT
GATGAAATAGGTGCGCAGATAAGTGGCGGGTACGAAGTGGAACCTCGAGT
GATATCCGAAAACACAGATGACGATTGCGATATTTCGGAATTTGTGACTA
TTGAATGA

protein sequence of Gcaud8571.t1

>Gcaud8571.t1 ID=Gcaud8571.t1|Name=Gcaud8571.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=236bp
MAAFSPSLASNSFLNRSTLSGTCRRSNPRIYRPTRTVPTALRMRRGATPD
PRIPPSLFEADPIRDIDFEPFDFSALKGKVVFVVNVASEDSRTDENYRMI
SDLLEDYHGSGLEVLAFPSNWYGQKETRPLKEIKKFVYEKYNKNIKLFSK
TDLEWNQIFALGCYYFPGEIIWNFHGKFLFNRNGVPVGRYDLLTTYQFLH
DEIGAQISGGYEVEPRVISENTDDDCDISEFVTIE*

mRNA from alignment at NODE_15_length_84509_cov_4.337096:44212..44919-

Legend: polypeptideCDSexonstart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud8571.t1 ID=Gcaud8571.t1|Name=Gcaud8571.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=708bp|location=Sequence derived from alignment at NODE_15_length_84509_cov_4.337096:44212..44919- (Gracilaria caudata M_176_S67 male)
ATGGCTGCCTTCAGCCCATCACTTGCATCCAACAGCTTTTTGAATAGGAG
CACACTGAGCGGCACCTGTCGCCGTTCTAACCCGAGAATATATCGACCCA
CCCGAACAGTGCCGACAGCTTTACGAATGAGGCGAGGAGCCACGCCTGAC
CCGAGAATCCCGCCATCTCTGTTCGAAGCAGATCCAATACGAGACATTGA
TTTTGAACCGTTCGACTTCTCCGCTCTGAAGGGGAAGGTGGTATTCGTCG
TAAACGTGGCTTCGGAAGACTCTCGCACCGACGAAAACTACAGGATGATA
TCGGACCTGCTCGAAGACTATCATGGATCAGGGCTGGAGGTGTTGGCGTT
TCCCAGCAACTGGTATGGGCAAAAGGAAACACGTCCGTTGAAGGAAATAA
AAAAGTTCGTGTACGAGAAGTATAACAAGAACATTAAGCTCTTCTCGAAG
ACAGATTTGGAGTGGAATCAGATATTCGCTCTTGGTTGTTACTATTTTCC
AGGCGAGATCATTTGGAACTTTCACGGAAAATTCTTGTTCAACAGGAATG
GCGTTCCTGTCGGACGATATGACCTGCTCACCACTTATCAGTTTCTGCAT
GATGAAATAGGTGCGCAGATAAGTGGCGGGTACGAAGTGGAACCTCGAGT
GATATCCGAAAACACAGATGACGATTGCGATATTTCGGAATTTGTGACTA
TTGAATGA

Coding sequence (CDS) from alignment at NODE_15_length_84509_cov_4.337096:44212..44919-

>Gcaud8571.t1 ID=Gcaud8571.t1|Name=Gcaud8571.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=708bp|location=Sequence derived from alignment at NODE_15_length_84509_cov_4.337096:44212..44919- (Gracilaria caudata M_176_S67 male)
ATGGCTGCCTTCAGCCCATCACTTGCATCCAACAGCTTTTTGAATAGGAG
CACACTGAGCGGCACCTGTCGCCGTTCTAACCCGAGAATATATCGACCCA
CCCGAACAGTGCCGACAGCTTTACGAATGAGGCGAGGAGCCACGCCTGAC
CCGAGAATCCCGCCATCTCTGTTCGAAGCAGATCCAATACGAGACATTGA
TTTTGAACCGTTCGACTTCTCCGCTCTGAAGGGGAAGGTGGTATTCGTCG
TAAACGTGGCTTCGGAAGACTCTCGCACCGACGAAAACTACAGGATGATA
TCGGACCTGCTCGAAGACTATCATGGATCAGGGCTGGAGGTGTTGGCGTT
TCCCAGCAACTGGTATGGGCAAAAGGAAACACGTCCGTTGAAGGAAATAA
AAAAGTTCGTGTACGAGAAGTATAACAAGAACATTAAGCTCTTCTCGAAG
ACAGATTTGGAGTGGAATCAGATATTCGCTCTTGGTTGTTACTATTTTCC
AGGCGAGATCATTTGGAACTTTCACGGAAAATTCTTGTTCAACAGGAATG
GCGTTCCTGTCGGACGATATGACCTGCTCACCACTTATCAGTTTCTGCAT
GATGAAATAGGTGCGCAGATAAGTGGCGGGTACGAAGTGGAACCTCGAGT
GATATCCGAAAACACAGATGACGATTGCGATATTTCGGAATTTGTGACTA
TTGAATGA