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Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following stop_codon feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
| Gcaud8569.t1.stop1 | Gcaud8569.t1.stop1 | Gracilaria caudata M_176_S67 male | stop_codon | NODE_15_length_84509_cov_4.337096 34036..34038 - |
The following CDS feature(s) are a part of this mRNA:
The following exon feature(s) are a part of this mRNA:
The following intron feature(s) are a part of this mRNA:
The following start_codon feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
| Gcaud8569.t1.start1 | Gcaud8569.t1.start1 | Gracilaria caudata M_176_S67 male | start_codon | NODE_15_length_84509_cov_4.337096 39062..39064 - |
Sequences
The following sequences are available for this feature:
mRNA sequence >Gcaud8569.t1 ID=Gcaud8569.t1|Name=Gcaud8569.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=577bp MQLAPALLRAATLHAYAADALHVLADLLRAPRATVAGGVPRALAQLALPL LRAPLLTASVGEEDAAAAAALRALATLAEMPSFASCRALCDRALLGALHA ALLRAVHTGRPPLVIGAAHFLVALLSAQHVLLRATLNELRMSHLLVRALQ LNECRAHVLRYFAALLRPSASLPELPYNLLLPQLIASLRHAKEPELVPTV QILCALPTHLTSPSALVAPLVHARLALHSAHAAAAPAVRDLLDALALVEA EPAATPVVEIPAPRTLSSAHLLRRRTSTTRRVASDFDVRRLASLDVPTRS AKRTRKSTRLAPIEPSQEPLADLLARHRAQPFSQIDDDISLQSNIESSAV APTRRASDLQPSLNGFPDDGPSSMPAWPSFKPRFLSSPSNSFDTDEDSED GSDLTSNGSFSLSASESDSFEAADMQFAQSRQTSELDDALRTISDMREPE SDTFSTSIAGLPVRKSDVRESSTVTNSVDTIDDADVLEESEFPDLASRVF QRAYAKHAAENGADILYGAKRFAERERNNGMGTRPQWSIWPFNSAEENAS LRMNSDRALSPSRQLVVAFIANGSLN* back to topspliced messenger RNA >Gcaud8569.t1 ID=Gcaud8569.t1|Name=Gcaud8569.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1731bp|location=Sequence derived from alignment at NODE_15_length_84509_cov_4.337096:34036..39064- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.
ATGCAACTGGCGCCGGCGTTGCTACGCGCCGCTACGCTGCACGCCTACGC CGCAGATGCGCTGCATGTGTTGGCTGATTTATTGCGCGCGCCGCGCGCCA CGGTGGCGGGTGGTGTGCCCAGGGCGTTGGCGCAGTTGGCACTGCCGTTG TTGAGGGCGCCTTTACTTACTGCGAGCGTGGGCGAGGAGGATGCGGCCGC GGCCGCGGCGCTGCGCGCTCTCGCCACGTTGGCGGAGATGCCGTCGTTTG CGAGCTGTCGAGCGTTGTGCGATCGCGCTTTGTTGGGCGCGTTGCATGCG GCTCTGTTGAGGGCCGTGCATACCGGTAGGCCGCCGTTGGTGATCGGCGC GGCACACTTCCTGGTGGCGTTGTTGTCGGCGCAACACGTGCTGTTGAGGG CTACGTTGAATGAGCTGAGGATGTCTCATTTGCTGGTGCGCGCGTTGCAG CTCAACGAATGCCGTGCACATGTGTTGCGTTACTTTGCCGCGCTGTTGAG GCCGTCTGCTTCGCTGCCGGAGCTGCCGTATAACCTGCTGTTGCCGCAGC TCATTGCGTCCTTGCGTCATGCCAAGGAGCCGGAGTTGGTGCCTACTGTT CAGATCCTGTGTGCGCTGCCCACTCATTTGACCTCGCCCTCTGCTTTGGT TGCCCCCCTCGTGCACGCACGACTCGCCTTGCACTCGGCGCATGCTGCCG CCGCGCCCGCTGTGCGCGATCTGTTGGACGCGCTCGCGCTCGTGGAAGCG GAACCGGCCGCGACGCCCGTCGTGGAAATACCAGCGCCGCGTACCTTGAG CAGCGCGCACCTGCTCAGACGACGCACTTCTACTACGCGTCGCGTGGCAT CGGACTTCGACGTGCGACGATTGGCCAGTCTGGATGTGCCTACGCGCTCG GCGAAGCGCACTAGAAAGTCCACTCGTCTTGCGCCGATTGAGCCCAGTCA GGAGCCGTTGGCCGATCTGCTGGCGCGTCACCGAGCACAGCCGTTCAGTC AGATCGATGACGATATATCGCTTCAATCGAATATCGAGTCGTCTGCGGTT GCTCCTACTCGTCGTGCATCAGATCTACAGCCATCGCTGAACGGCTTTCC GGATGACGGACCATCTAGCATGCCGGCGTGGCCTTCGTTCAAACCGCGCT TCTTGTCTAGCCCCTCAAATAGCTTTGATACGGATGAGGATAGCGAGGAT GGTAGCGATCTTACTAGTAATGGGTCATTCTCGCTATCGGCATCGGAATC GGACAGCTTTGAGGCGGCTGATATGCAATTCGCTCAGTCCAGACAGACTT CGGAGTTGGACGATGCGCTGCGCACGATTAGTGATATGCGGGAGCCCGAG TCGGACACGTTTAGTACTAGCATTGCGGGGCTTCCAGTTCGAAAGAGTGA TGTGCGTGAGTCTTCCACCGTGACGAATAGTGTGGATACAATCGATGACG CGGACGTGCTTGAGGAGAGCGAGTTTCCTGACCTAGCATCTCGCGTATTC CAGCGCGCGTACGCAAAGCATGCCGCGGAGAACGGGGCGGATATCTTGTA TGGGGCGAAGCGGTTTGCCGAACGCGAGAGGAATAATGGAATGGGCACTC GACCGCAATGGAGCATTTGGCCATTTAATTCGGCGGAGGAGAATGCTTCG TTGCGAATGAACTCGGACAGGGCCTTGTCGCCGAGTCGTCAACTGGTGGT TGCCTTCATTGCAAACGGTTCCCTTAACTAG back to topprotein sequence of Gcaud8569.t1 >Gcaud8569.t1 ID=Gcaud8569.t1|Name=Gcaud8569.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=577bp
MQLAPALLRAATLHAYAADALHVLADLLRAPRATVAGGVPRALAQLALPL LRAPLLTASVGEEDAAAAAALRALATLAEMPSFASCRALCDRALLGALHA ALLRAVHTGRPPLVIGAAHFLVALLSAQHVLLRATLNELRMSHLLVRALQ LNECRAHVLRYFAALLRPSASLPELPYNLLLPQLIASLRHAKEPELVPTV QILCALPTHLTSPSALVAPLVHARLALHSAHAAAAPAVRDLLDALALVEA EPAATPVVEIPAPRTLSSAHLLRRRTSTTRRVASDFDVRRLASLDVPTRS AKRTRKSTRLAPIEPSQEPLADLLARHRAQPFSQIDDDISLQSNIESSAV APTRRASDLQPSLNGFPDDGPSSMPAWPSFKPRFLSSPSNSFDTDEDSED GSDLTSNGSFSLSASESDSFEAADMQFAQSRQTSELDDALRTISDMREPE SDTFSTSIAGLPVRKSDVRESSTVTNSVDTIDDADVLEESEFPDLASRVF QRAYAKHAAENGADILYGAKRFAERERNNGMGTRPQWSIWPFNSAEENAS LRMNSDRALSPSRQLVVAFIANGSLN* back to topmRNA from alignment at NODE_15_length_84509_cov_4.337096:34036..39064- Legend: polypeptideCDSexonstart_codonintronstop_codon Hold the cursor over a type above to highlight its positions in the sequence below. >Gcaud8569.t1 ID=Gcaud8569.t1|Name=Gcaud8569.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=5029bp|location=Sequence derived from alignment at NODE_15_length_84509_cov_4.337096:34036..39064- (Gracilaria caudata M_176_S67 male) ATGCAACTGGCGCCGGCGTTGCTACGCGCCGCTACGCTGCACGCCTACGC
CGCAGATGCGCTGCATGTGTTGGCTGATTTATTGCGCGCGCCGCGCGCCA
CGGTGGCGGGTGGTGTGCCCAGGGCGTTGGCGCAGTTGGCACTGCCGTTG
TTGAGGGCGCCTTTACTTACTGCGAGCGTGGGCGAGGAGGATGCGGCCGC
GGCCGCGGCGCTGCGCGCTCTCGCCACGTTGGCGGAGATGCCGTCGTTTG
CGAGCTGTCGAGCGTTGTGCGATCGCGCTTTGTTGGGCGCGTTGCATGCG
GCTCTGTTGAGGGCCGTGCATACCGGTAGGCCGCCGTTGGTGATCGGCGC
GGCACACTTCCTGGTGGCGTTGTTGTCGGCGCAACACGTGCTGTTGAGGG
CTACGTTGAATGAGCTGAGGATGTCTCATTTGCTGGTGCGCGCGTTGCAG
CTCAACGAATGCCGTGCACATGTGTTGCGTTACTTTGCCGCGCTGTTGAG
GCCGTCTGCTTCGCTGCCGGAGCTGCCGTATAACCTGCTGTTGCCGCAGC
TCATTGCGTCCTTGCGTCATGCCAAGGAGCCGGAGTTGGTGCCTACTGTT
CAGATCCTGTGTGCGCTGCCCACTCATTTGACCTCGCCCTCTGCTTTGGT
TGCCCCCCTCGTGCACGTGCTTCCTCGTCTCCCGCCCCCTGCCCTGCCGC
CCGCGCTTTCGTTGTTGGCTAAGTTGCTTTCCGGCAATGTACAGGTCGCT
AAACACGCCCATACCGCGCAAGCAGCGCGCTCTCTTTCGGAGGCTGCTCG
TCCACATACCGCCATCATAGCCGTCATGCATCCCACCCTCGTTGCTTTAA
AGCAGCTCATTCATTGTTACGATCGTAACCGCGCCGCCGTCGTGGCGGCT
AATTTGCCGCAGCTCGTGTTGCTCGTGTTGGTCAAACATGCGCGTCAGCC
CAATATTGTCGCCGCCGCCTCCAACGTGTTCATCTTGCTCTCCCCCGCCG
ATCTGCGTTCGTCGCAGATTGACTTGGATGCGCTCACCAAGATGTTGCAG
GCACGACTCGCCTTGCACTCGGCGCATGCTGCCGCCGCGCCCGCTGTGCG
CGATCTGTTGGACGCGCTCGCGCTCGTGGAAGCGGAACCGGCCGCGACGC
CCGTCGTGGAAATACCAGCGCCGCGTACCTTGAGCAGCGCGCACCTGCTC
AGACGACGCACTTCTACTACGCGTCGCGTGGCATCGGACTTCGACGTGCG
ACGATTGGCCAGTCTGGATGTGCCTACGCGCTCGGCGAAGCGCACTAGAA
AGTCCACTCGTCTTGCGCCGATTGAGCCCAGTCAGGAGCCGTTGGCCGAT
CTGCTGGCGCGTCACCGAGCACAGCCGTTCAGTCAGATCGATGACGATAT
ATCGCTTCAATCGAATATCGAGTCGTCTGCGGTTGCTCCTACTCGTCGTG
CATCAGATCTACAGCCATCGCTGAACGGCTTTCCGGATGACGGACCATCT
AGCATGCCGGCGTGGCCTTCGTTCAAACCGCGCTTCTTGTCTAGCCCCTC
AAATAGCTTTGATACGGATGAGGATAGCGAGGATGGTAGCGATCTTACTA
GTAATGGGTCATTCTCGCTATCGGCATCGGAATCGGACAGCTTTGAGGCG
GCTGATATGCAATTCGCTCAGTCCAGACAGACTTCGGAGTTGGACGATGC
GCTGCGCACGATTAGTGATATGCGGGAGCCCGAGTCGGACACGTTTAGTA
CTAGCATTGCGGGGCTTCCAGTTCGAAAGAGTGATGTGCGTGAGTCTTCC
ACCGTGACGAATAGTGTGGATACAATCGATGACGCGGACGTGCTTGAGGA
GAGCGAGTTTCCTGACCTAGCATCTCGCGTATTCCAGCGCGCGTACGCAA
AGCATGCCGCGGAGAACGGGGCGGATATCTTGTATGGGGCGAAGCGGTTT
GCCGAACGCGAGAGGAATAATGGAATGGGCACTCGACCGCAATGGAGCAT
TTGGCCATTTAATTCGGCGGAGGAGAATGCTTCGTTGCGAATGAACTCGG
TTCGTTCGCACACCAGAGGCGAGAGCGGAACTATACGCGGGCGGCGATAG
TGAGTTGCCTTCGTTTGTGAAAGTCTCGAGAGTTTATAGGGTTCTCGATC
ACTCGCGTGTTTGTGCGCGTTGCCCTTTTGTCACTGGAATGAGTGCATGT
GGGTCGTGCGACGCTCATGGTGAGCTTTTGGGCACGTGATTGGGCAGTAA
TGTCTCGATGGTGTTTTGGTGGAGCTTGTGCTGCACGCTGACAAGATGCA
ATCTTCATTGTATATTCCCGCACCAATCGGTCGGAGCATGGGAAGTAGTG
GAAAGCAATGCTGTCTACGACAAATGACAAGCTAACGCTTTCGTAAGTTG
GGATCCGTCGATGGTACCATCCGTGATGAGTGTGAGGCACAGAGCAGAGC
AGCTCAGTGGTTGTTGTGGTTAGAATCATGTTAGGTAATAAGTGCGGCGC
ACAGATCGGGGAAGATATGGCCGATTCCGTCTGTGATAAACGACATATGA
CTTTTTCGTTGTCTCATGGAGTGCTAGAGCAGGAAAAGTGCCAACTGCGC
TACATACCCGGTGTAGTGTACCATAGTAGGCTAGCGTGGGCGTGTGTGAC
CACAAAAAGAAATCAAGCTGCTGTTGGCATGTTGTGGTCCAGCTCCAGCT
CCTGTCTCGTTCCTGTAGACTCCGACAAAAATGTCGCTCTTTTGATGACA
CCATTTGCGATCCTGAGCGGACGACGGGAATATGCGACTTTGACGCGTGG
TGTACGACGGAACTTTTGCCTGAATTATACTCCATGTGGTACACGCTTTG
AAGCAACACGCACCGAAAAAACACAAGGCTTTACCATATCGCAACCGCTT
CCTGTGCGTTTTCGACTCTCTCTCTCTCTCTCTTGAGATTCCACCTCGTC
ATCACGCAGAATATGACGTAAAAGAGGTCAACAAGTGCTATTGTCCATCA
TTTCTGTTGAACAAGAGCTTTCCGAGAGCCGAACAGATGATGTCGTCTAC
AACATGGTGATCAAGAGAGAATGCCTTGTACCATTCCAAATATGTCTCCG
GCGCATTGAGCTTCATTCCGCCTTCAAGGTAGGGGTCCTGTACTGAAGAG
TCTCCTAGTACACACACACACACACCCAAACTCCTCTCTCCCCAAGAAGA
CCACCTTCCTATCGGGCCCTCTCGAACCAAATCCGAAACAACATTTTCGG
GTCCTTTGTCCATACCAATGATACAGCACCGTTGTACTGTATCATTGGTA
TCTTGAGCCTCCTGTTTTGGCTGCATAGCACCCACAGTCCATTCCGCTGG
ACACAATTCCTCAACAATCAAAGAGCAACGTACAATGGTATTCTACCACA
TGTATTTCTCGCACACGAGTTGTTGAGTAGACTTATTACGTGCCTCTCGT
AGATCTCTGGCACAGTGGATCGAGGGTCGAAAGTTACCTCAAGACTCTGC
TCACTGTTACACTGTGGTTTTAGCAACCGAACGATGAACCCTATGCACCC
GTGACCGTCAAGAGACAAAATCCCCAAACACTGTAGAAAACAAACTTACT
ATTGCTTTGGCTAGCCGCCGACGAACACGCCCTGAACCGGGGGTGTGACA
TTCAGCCTAAACGTCTTGGATTCACCAACTTCAGAGTTAACACTTCTTTC
GAAATGCAGTGCAAACCAAGGATCATTCTTAAACCAAGACTCGGTTCAAG
GAGTGTCGACAAACTCTTCTGTTGTCCTCGCGTTTCGAGAAAATTCGGCA
ATGCTCATTGGAAAATGTTTGATATCTAGAAGCTGAAGACGCTTGTTGAC
TCAGTGGGCGGCAAATGAATGCATGCATAACACAAGGCGCGCCTCGGAAC
GATCCAATAAATGGTTCAGTTGCTCTCGCCGACTGCACTGAATTGAAAGC
ATTTAATGCTGACGGCCAAACCGACGTCGTCGTTCTTCTTGTTTTCATTA
ACGACGAGTTTGTCCCTATTGGAGGTTGAGCGCACTTGCGTTCACCCTAT
ACCGACAGTAAGTGTATTTATCGATATTGTACTTGCACTGGCTTGTACAC
CCATCCTCTCGCGGACTTGTGCACAAATCCTCTCCTGGACTTCTAGATCC
ATACTCTCCTAAGTCGCAAGAGGTCTCCGGGTTTACTATAAATACAGGTT
CTTCTCTCACTCTTTCTCCTGTTTCTTCCTCCTCACTCTCAACTTCAATC
ACCGCTACAATCTCCTTTCTCTTTGCTTCGGGCTCGACATTTCGCATCTC
CACATGTGTATGGTTTCATTCTCTCAACATGTTCGTCTTCCATCGACACC
GAAGCATTTCGCCCATCCTCGCCGAAGCCTTCCGCCGTCTCTCTCGTTTC
TGTCATGGGTGACAGAGACTTGTCTGCTTTCTTCTTTATTTTGGACAACA
GGACAGGGCCTTGTCGCCGAGTCGTCAACTGGTGGTTGCCTTCATTGCAA
ACGGTGAGTTACCTCAATCTTGTTTGGTAACATTTGGGTCGCAAAACAGC
TGGTGCCGGTCCTGCTTGTCCATTGGCCGAGGTCGTGAATATGTCAGGTT
GTAATGTTCCTGCAGCAATGGAGTTGGCTCTTCGTTCTCAGGCTGCAAAG
CTCCTGGCACCAGTCCCGCGTGCCCCTTGGGCGTTGGGTTGTAGATCGTT
CCCCAGATGGAGCTCACCAGTGCGGTCCCTTTCTCTCAATTGAAGGTTGC
AAAATTAAGGCCGTCTGCAGGTCTCCCGTCGGTGTCTCGTCGGTGGACTG
TCGGGTTGTGATCTCTCCCTGAGATTGGGGAGGGAGGATGTTTTAAGAAC
TGTCACTGACGGAAGTTTTGTTTCTGCTTTTCTCTTTGCTCTTATGTTTC
TTCTCTGAACGATGTGTTGAGTTCCGCGGGCGGCAAAAGGTACGGCTACT
ATTTGGGACTAACTAAACGGTTATCTCTGACAATGGCTCTTGTGGCTTTT
GGATTGTGCGCACAGGTTCCCTTAACTAG back to topCoding sequence (CDS) from alignment at NODE_15_length_84509_cov_4.337096:34036..39064- >Gcaud8569.t1 ID=Gcaud8569.t1|Name=Gcaud8569.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1731bp|location=Sequence derived from alignment at NODE_15_length_84509_cov_4.337096:34036..39064- (Gracilaria caudata M_176_S67 male) ATGCAACTGGCGCCGGCGTTGCTACGCGCCGCTACGCTGCACGCCTACGC CGCAGATGCGCTGCATGTGTTGGCTGATTTATTGCGCGCGCCGCGCGCCA CGGTGGCGGGTGGTGTGCCCAGGGCGTTGGCGCAGTTGGCACTGCCGTTG TTGAGGGCGCCTTTACTTACTGCGAGCGTGGGCGAGGAGGATGCGGCCGC GGCCGCGGCGCTGCGCGCTCTCGCCACGTTGGCGGAGATGCCGTCGTTTG CGAGCTGTCGAGCGTTGTGCGATCGCGCTTTGTTGGGCGCGTTGCATGCG GCTCTGTTGAGGGCCGTGCATACCGGTAGGCCGCCGTTGGTGATCGGCGC GGCACACTTCCTGGTGGCGTTGTTGTCGGCGCAACACGTGCTGTTGAGGG CTACGTTGAATGAGCTGAGGATGTCTCATTTGCTGGTGCGCGCGTTGCAG CTCAACGAATGCCGTGCACATGTGTTGCGTTACTTTGCCGCGCTGTTGAG GCCGTCTGCTTCGCTGCCGGAGCTGCCGTATAACCTGCTGTTGCCGCAGC TCATTGCGTCCTTGCGTCATGCCAAGGAGCCGGAGTTGGTGCCTACTGTT CAGATCCTGTGTGCGCTGCCCACTCATTTGACCTCGCCCTCTGCTTTGGT TGCCCCCCTCGTGCACGCACGACTCGCCTTGCACTCGGCGCATGCTGCCG CCGCGCCCGCTGTGCGCGATCTGTTGGACGCGCTCGCGCTCGTGGAAGCG GAACCGGCCGCGACGCCCGTCGTGGAAATACCAGCGCCGCGTACCTTGAG CAGCGCGCACCTGCTCAGACGACGCACTTCTACTACGCGTCGCGTGGCAT CGGACTTCGACGTGCGACGATTGGCCAGTCTGGATGTGCCTACGCGCTCG GCGAAGCGCACTAGAAAGTCCACTCGTCTTGCGCCGATTGAGCCCAGTCA GGAGCCGTTGGCCGATCTGCTGGCGCGTCACCGAGCACAGCCGTTCAGTC AGATCGATGACGATATATCGCTTCAATCGAATATCGAGTCGTCTGCGGTT GCTCCTACTCGTCGTGCATCAGATCTACAGCCATCGCTGAACGGCTTTCC GGATGACGGACCATCTAGCATGCCGGCGTGGCCTTCGTTCAAACCGCGCT TCTTGTCTAGCCCCTCAAATAGCTTTGATACGGATGAGGATAGCGAGGAT GGTAGCGATCTTACTAGTAATGGGTCATTCTCGCTATCGGCATCGGAATC GGACAGCTTTGAGGCGGCTGATATGCAATTCGCTCAGTCCAGACAGACTT CGGAGTTGGACGATGCGCTGCGCACGATTAGTGATATGCGGGAGCCCGAG TCGGACACGTTTAGTACTAGCATTGCGGGGCTTCCAGTTCGAAAGAGTGA TGTGCGTGAGTCTTCCACCGTGACGAATAGTGTGGATACAATCGATGACG CGGACGTGCTTGAGGAGAGCGAGTTTCCTGACCTAGCATCTCGCGTATTC CAGCGCGCGTACGCAAAGCATGCCGCGGAGAACGGGGCGGATATCTTGTA TGGGGCGAAGCGGTTTGCCGAACGCGAGAGGAATAATGGAATGGGCACTC GACCGCAATGGAGCATTTGGCCATTTAATTCGGCGGAGGAGAATGCTTCG TTGCGAATGAACTCGGACAGGGCCTTGTCGCCGAGTCGTCAACTGGTGGT TGCCTTCATTGCAAACGGTTCCCTTAACTAG back to top
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