Gcaud8567.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud8567.t1
Unique Name	Gcaud8567.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	638

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_15_length_84509_cov_4.337096	contig	NODE_15_length_84509_cov_4.337096:28214..30127 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	227086.JGI_V11_74920
Preferred name	NCAPH2
PFAMs	CNDH2_C,CNDH2_M,CNDH2_N
Max annot lvl	2759\|Eukaryota
KEGG ko	ko:K11490
GOs	GO:0000003,GO:0000070,GO:0000278,GO:0000280,GO:0000793,GO:0000796,GO:0000819,GO:0001775,GO:0002376,GO:0002520,GO:0002521,GO:0005575,GO:0005576,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005694,GO:0005730,GO:0006282,GO:0006323,GO:0006996,GO:0007049,GO:0007059,GO:0007143,GO:0007275,GO:0007276,GO:0007292,GO:0008150,GO:0009893,GO:0009987,GO:0010032,GO:0010604,GO:0016043,GO:0016321,GO:0019219,GO:0019222,GO:0019953,GO:0022402,GO:0022412,GO:0022414,GO:0030054,GO:0030097,GO:0030098,GO:0030154,GO:0030217,GO:0030261,GO:0031323,GO:0031325,GO:0031974,GO:0031981,GO:0032501,GO:0032502,GO:0032504,GO:0032991,GO:0033077,GO:0042110,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044421,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044446,GO:0044464,GO:0044703,GO:0044815,GO:0045132,GO:0045171,GO:0045321,GO:0045739,GO:0045935,GO:0046649,GO:0048285,GO:0048513,GO:0048518,GO:0048522,GO:0048534,GO:0048583,GO:0048584,GO:0048609,GO:0048731,GO:0048856,GO:0048869,GO:0050789,GO:0050794,GO:0051052,GO:0051054,GO:0051171,GO:0051173,GO:0051276,GO:0051304,GO:0051306,GO:0051307,GO:0051309,GO:0051321,GO:0051704,GO:0060255,GO:0065007,GO:0070013,GO:0070192,GO:0071103,GO:0071840,GO:0080090,GO:0080134,GO:0080135,GO:0098813,GO:0140013,GO:0140014,GO:1903046,GO:1903047,GO:2001020,GO:2001022
Evalue	2.84e-32
EggNOG OGs	KOG2359@1\|root,KOG2359@2759\|Eukaryota
Description	chromosome condensation
COG category	S
BRITE	ko00000,ko03036

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud8567	Gcaud8567	Gracilaria caudata M_176_S67 male	gene	NODE_15_length_84509_cov_4.337096 28214..30127 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud8567.t1.stop1	Gcaud8567.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_15_length_84509_cov_4.337096 28214..28216 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud8567.t1.CDS1	Gcaud8567.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_15_length_84509_cov_4.337096 28214..30127 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud8567.t1.exon1	Gcaud8567.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_15_length_84509_cov_4.337096 28214..30127 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud8567.t1.start1	Gcaud8567.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_15_length_84509_cov_4.337096 30125..30127 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud8567.t1	Gcaud8567.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_15_length_84509_cov_4.337096 28214..30127 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_15_length_84509_cov_4.337096:28214..30127-
coding sequence from alignment at NODE_15_length_84509_cov_4.337096:28214..30127-

mRNA sequence

>Gcaud8567.t1 ID=Gcaud8567.t1|Name=Gcaud8567.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=638bp
MTQRAVETPSFSVLLNPIRDLAANWSIDVAKELTHYAATLGINLDETSSP
QLPNSIQVDFAQAALLVQGSTSIYSRKVEHLYSLVYTAVASFNHLKSNKH
SAREDGDGSDENVEDDEFLADEVNFLTLDDCLPEIDERQVTLPAKDLPPP
GSLRDNTCLKQIPPMLVQHGSDAAQIASTKFNMLSARLHPSGALIMPGCP
PFDENLQALPEGCQPPAVEHQPETEDVEEHDATQPTHVDFDNDDGFHTPP
PIAAPDDGEEILVAVASSAKKRRSPEVSPVDKEDFEPPKRDPFLLLDPHQ
KIPKLDKELKVGKTYQKPRKNSEPKPYIGFVDDGMSKMELVEALLGPISR
GSSIRSYLCFEGARNSYQDILRRRMTKKRERMRRNSPTAVIFDEHREMID
DMEEEEDLIEMGVNTVTFDMDDNEEIDIPPYPDADDGGDDLEGIEGMDAS
ANEMQRLADSNDSPSVFQDQLLQLASSYEETCRKYLERTRGLWEQHSVDA
KLASRVESWASRIQPILDEEEKRPEFDIAAYGQRILGQFRERKDKQGVSE
MAMSAVFHGCSTYDVCRNFLATLQLANSCAIEIVPPPHCSVSDPTVRLIC
QAPSATTPVKPRSKRLRQSGGTPHTAKRAPLRQRLDM*

spliced messenger RNA

>Gcaud8567.t1 ID=Gcaud8567.t1|Name=Gcaud8567.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1914bp|location=Sequence derived from alignment at NODE_15_length_84509_cov_4.337096:28214..30127- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGACGCAACGCGCTGTTGAAACACCGAGTTTCAGTGTGTTGCTTAATCC
GATACGAGACCTGGCCGCCAACTGGAGCATAGATGTCGCCAAAGAACTTA
CGCACTACGCCGCCACTCTCGGTATTAATCTCGATGAAACATCTTCACCG
CAGTTGCCAAATTCTATTCAAGTTGACTTCGCGCAGGCCGCATTGCTTGT
ACAAGGCTCAACTTCAATATACTCGCGAAAGGTCGAGCATTTGTACAGTC
TTGTGTACACGGCAGTTGCGTCTTTTAACCACCTAAAGAGTAATAAACAC
TCTGCTCGAGAGGATGGTGACGGCTCTGATGAGAATGTTGAGGATGATGA
ATTTCTGGCTGATGAGGTTAATTTTCTCACCTTGGATGATTGTTTGCCGG
AGATTGATGAGCGTCAAGTCACACTTCCAGCAAAAGATTTACCGCCTCCA
GGCTCTCTGCGGGACAACACATGCTTGAAACAAATCCCTCCGATGCTTGT
GCAGCATGGTTCCGATGCTGCTCAAATCGCGTCAACAAAGTTCAATATGT
TATCGGCGCGTTTGCATCCGTCTGGTGCGCTTATTATGCCAGGTTGTCCC
CCTTTTGATGAGAACTTACAAGCGCTACCTGAAGGCTGTCAACCACCAGC
AGTGGAACATCAACCTGAAACTGAAGACGTCGAAGAACATGATGCTACGC
AGCCAACTCATGTTGACTTTGACAATGATGATGGGTTTCATACCCCGCCA
CCAATAGCTGCCCCTGATGATGGCGAGGAGATTTTAGTAGCGGTGGCGAG
CTCAGCGAAGAAGCGACGAAGTCCTGAAGTTTCGCCTGTAGATAAAGAGG
ACTTTGAGCCTCCGAAACGAGATCCGTTTTTGCTCCTGGATCCGCATCAG
AAGATACCGAAGCTGGATAAAGAGTTAAAAGTGGGCAAAACGTATCAGAA
GCCTAGAAAAAACAGCGAACCCAAGCCTTACATAGGGTTTGTGGACGATG
GTATGAGCAAGATGGAATTGGTGGAGGCCCTTTTGGGACCTATCTCTCGG
GGCAGTTCTATTAGAAGTTACCTCTGCTTTGAAGGTGCTAGGAATAGCTA
TCAGGACATTTTGAGACGGAGGATGACAAAGAAGAGAGAGCGAATGAGGA
GAAATTCACCCACGGCTGTCATCTTTGACGAACATCGAGAGATGATTGAT
GACATGGAGGAGGAAGAAGATCTCATTGAAATGGGAGTCAACACTGTGAC
GTTTGATATGGATGACAACGAGGAGATAGACATACCTCCTTATCCGGATG
CGGACGATGGAGGGGATGACCTGGAAGGTATAGAAGGCATGGATGCGTCA
GCAAATGAAATGCAACGTTTGGCAGATAGTAATGATTCACCTTCTGTGTT
CCAAGATCAGCTTCTTCAGCTAGCTTCCAGCTATGAAGAAACGTGCCGAA
AATACCTCGAGCGAACACGCGGGCTCTGGGAACAGCATTCCGTGGATGCA
AAGTTAGCGAGCAGAGTGGAGTCTTGGGCGTCACGAATACAACCGATCCT
GGATGAGGAAGAGAAGCGACCAGAATTCGACATAGCTGCATACGGGCAAC
GAATTCTCGGCCAATTCCGGGAGAGAAAGGACAAACAGGGGGTGAGTGAG
ATGGCAATGAGCGCGGTGTTTCACGGTTGTAGTACGTATGATGTATGTCG
CAATTTCTTGGCCACACTCCAACTTGCAAACTCTTGCGCAATCGAGATTG
TCCCACCGCCTCACTGCTCGGTGTCAGACCCGACGGTTCGTCTTATTTGC
CAGGCTCCAAGCGCTACAACACCAGTGAAACCACGGTCCAAGCGCTTGAG
ACAGTCAGGTGGGACGCCGCATACTGCAAAACGTGCTCCCCTCCGTCAGA
GACTAGACATGTAG

protein sequence of Gcaud8567.t1

>Gcaud8567.t1 ID=Gcaud8567.t1|Name=Gcaud8567.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=638bp
MTQRAVETPSFSVLLNPIRDLAANWSIDVAKELTHYAATLGINLDETSSP
QLPNSIQVDFAQAALLVQGSTSIYSRKVEHLYSLVYTAVASFNHLKSNKH
SAREDGDGSDENVEDDEFLADEVNFLTLDDCLPEIDERQVTLPAKDLPPP
GSLRDNTCLKQIPPMLVQHGSDAAQIASTKFNMLSARLHPSGALIMPGCP
PFDENLQALPEGCQPPAVEHQPETEDVEEHDATQPTHVDFDNDDGFHTPP
PIAAPDDGEEILVAVASSAKKRRSPEVSPVDKEDFEPPKRDPFLLLDPHQ
KIPKLDKELKVGKTYQKPRKNSEPKPYIGFVDDGMSKMELVEALLGPISR
GSSIRSYLCFEGARNSYQDILRRRMTKKRERMRRNSPTAVIFDEHREMID
DMEEEEDLIEMGVNTVTFDMDDNEEIDIPPYPDADDGGDDLEGIEGMDAS
ANEMQRLADSNDSPSVFQDQLLQLASSYEETCRKYLERTRGLWEQHSVDA
KLASRVESWASRIQPILDEEEKRPEFDIAAYGQRILGQFRERKDKQGVSE
MAMSAVFHGCSTYDVCRNFLATLQLANSCAIEIVPPPHCSVSDPTVRLIC
QAPSATTPVKPRSKRLRQSGGTPHTAKRAPLRQRLDM*

mRNA from alignment at NODE_15_length_84509_cov_4.337096:28214..30127-

Legend: polypeptideCDSexonstart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud8567.t1 ID=Gcaud8567.t1|Name=Gcaud8567.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1914bp|location=Sequence derived from alignment at NODE_15_length_84509_cov_4.337096:28214..30127- (Gracilaria caudata M_176_S67 male)
ATGACGCAACGCGCTGTTGAAACACCGAGTTTCAGTGTGTTGCTTAATCC
GATACGAGACCTGGCCGCCAACTGGAGCATAGATGTCGCCAAAGAACTTA
CGCACTACGCCGCCACTCTCGGTATTAATCTCGATGAAACATCTTCACCG
CAGTTGCCAAATTCTATTCAAGTTGACTTCGCGCAGGCCGCATTGCTTGT
ACAAGGCTCAACTTCAATATACTCGCGAAAGGTCGAGCATTTGTACAGTC
TTGTGTACACGGCAGTTGCGTCTTTTAACCACCTAAAGAGTAATAAACAC
TCTGCTCGAGAGGATGGTGACGGCTCTGATGAGAATGTTGAGGATGATGA
ATTTCTGGCTGATGAGGTTAATTTTCTCACCTTGGATGATTGTTTGCCGG
AGATTGATGAGCGTCAAGTCACACTTCCAGCAAAAGATTTACCGCCTCCA
GGCTCTCTGCGGGACAACACATGCTTGAAACAAATCCCTCCGATGCTTGT
GCAGCATGGTTCCGATGCTGCTCAAATCGCGTCAACAAAGTTCAATATGT
TATCGGCGCGTTTGCATCCGTCTGGTGCGCTTATTATGCCAGGTTGTCCC
CCTTTTGATGAGAACTTACAAGCGCTACCTGAAGGCTGTCAACCACCAGC
AGTGGAACATCAACCTGAAACTGAAGACGTCGAAGAACATGATGCTACGC
AGCCAACTCATGTTGACTTTGACAATGATGATGGGTTTCATACCCCGCCA
CCAATAGCTGCCCCTGATGATGGCGAGGAGATTTTAGTAGCGGTGGCGAG
CTCAGCGAAGAAGCGACGAAGTCCTGAAGTTTCGCCTGTAGATAAAGAGG
ACTTTGAGCCTCCGAAACGAGATCCGTTTTTGCTCCTGGATCCGCATCAG
AAGATACCGAAGCTGGATAAAGAGTTAAAAGTGGGCAAAACGTATCAGAA
GCCTAGAAAAAACAGCGAACCCAAGCCTTACATAGGGTTTGTGGACGATG
GTATGAGCAAGATGGAATTGGTGGAGGCCCTTTTGGGACCTATCTCTCGG
GGCAGTTCTATTAGAAGTTACCTCTGCTTTGAAGGTGCTAGGAATAGCTA
TCAGGACATTTTGAGACGGAGGATGACAAAGAAGAGAGAGCGAATGAGGA
GAAATTCACCCACGGCTGTCATCTTTGACGAACATCGAGAGATGATTGAT
GACATGGAGGAGGAAGAAGATCTCATTGAAATGGGAGTCAACACTGTGAC
GTTTGATATGGATGACAACGAGGAGATAGACATACCTCCTTATCCGGATG
CGGACGATGGAGGGGATGACCTGGAAGGTATAGAAGGCATGGATGCGTCA
GCAAATGAAATGCAACGTTTGGCAGATAGTAATGATTCACCTTCTGTGTT
CCAAGATCAGCTTCTTCAGCTAGCTTCCAGCTATGAAGAAACGTGCCGAA
AATACCTCGAGCGAACACGCGGGCTCTGGGAACAGCATTCCGTGGATGCA
AAGTTAGCGAGCAGAGTGGAGTCTTGGGCGTCACGAATACAACCGATCCT
GGATGAGGAAGAGAAGCGACCAGAATTCGACATAGCTGCATACGGGCAAC
GAATTCTCGGCCAATTCCGGGAGAGAAAGGACAAACAGGGGGTGAGTGAG
ATGGCAATGAGCGCGGTGTTTCACGGTTGTAGTACGTATGATGTATGTCG
CAATTTCTTGGCCACACTCCAACTTGCAAACTCTTGCGCAATCGAGATTG
TCCCACCGCCTCACTGCTCGGTGTCAGACCCGACGGTTCGTCTTATTTGC
CAGGCTCCAAGCGCTACAACACCAGTGAAACCACGGTCCAAGCGCTTGAG
ACAGTCAGGTGGGACGCCGCATACTGCAAAACGTGCTCCCCTCCGTCAGA
GACTAGACATGTAG

Coding sequence (CDS) from alignment at NODE_15_length_84509_cov_4.337096:28214..30127-

>Gcaud8567.t1 ID=Gcaud8567.t1|Name=Gcaud8567.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1914bp|location=Sequence derived from alignment at NODE_15_length_84509_cov_4.337096:28214..30127- (Gracilaria caudata M_176_S67 male)
ATGACGCAACGCGCTGTTGAAACACCGAGTTTCAGTGTGTTGCTTAATCC
GATACGAGACCTGGCCGCCAACTGGAGCATAGATGTCGCCAAAGAACTTA
CGCACTACGCCGCCACTCTCGGTATTAATCTCGATGAAACATCTTCACCG
CAGTTGCCAAATTCTATTCAAGTTGACTTCGCGCAGGCCGCATTGCTTGT
ACAAGGCTCAACTTCAATATACTCGCGAAAGGTCGAGCATTTGTACAGTC
TTGTGTACACGGCAGTTGCGTCTTTTAACCACCTAAAGAGTAATAAACAC
TCTGCTCGAGAGGATGGTGACGGCTCTGATGAGAATGTTGAGGATGATGA
ATTTCTGGCTGATGAGGTTAATTTTCTCACCTTGGATGATTGTTTGCCGG
AGATTGATGAGCGTCAAGTCACACTTCCAGCAAAAGATTTACCGCCTCCA
GGCTCTCTGCGGGACAACACATGCTTGAAACAAATCCCTCCGATGCTTGT
GCAGCATGGTTCCGATGCTGCTCAAATCGCGTCAACAAAGTTCAATATGT
TATCGGCGCGTTTGCATCCGTCTGGTGCGCTTATTATGCCAGGTTGTCCC
CCTTTTGATGAGAACTTACAAGCGCTACCTGAAGGCTGTCAACCACCAGC
AGTGGAACATCAACCTGAAACTGAAGACGTCGAAGAACATGATGCTACGC
AGCCAACTCATGTTGACTTTGACAATGATGATGGGTTTCATACCCCGCCA
CCAATAGCTGCCCCTGATGATGGCGAGGAGATTTTAGTAGCGGTGGCGAG
CTCAGCGAAGAAGCGACGAAGTCCTGAAGTTTCGCCTGTAGATAAAGAGG
ACTTTGAGCCTCCGAAACGAGATCCGTTTTTGCTCCTGGATCCGCATCAG
AAGATACCGAAGCTGGATAAAGAGTTAAAAGTGGGCAAAACGTATCAGAA
GCCTAGAAAAAACAGCGAACCCAAGCCTTACATAGGGTTTGTGGACGATG
GTATGAGCAAGATGGAATTGGTGGAGGCCCTTTTGGGACCTATCTCTCGG
GGCAGTTCTATTAGAAGTTACCTCTGCTTTGAAGGTGCTAGGAATAGCTA
TCAGGACATTTTGAGACGGAGGATGACAAAGAAGAGAGAGCGAATGAGGA
GAAATTCACCCACGGCTGTCATCTTTGACGAACATCGAGAGATGATTGAT
GACATGGAGGAGGAAGAAGATCTCATTGAAATGGGAGTCAACACTGTGAC
GTTTGATATGGATGACAACGAGGAGATAGACATACCTCCTTATCCGGATG
CGGACGATGGAGGGGATGACCTGGAAGGTATAGAAGGCATGGATGCGTCA
GCAAATGAAATGCAACGTTTGGCAGATAGTAATGATTCACCTTCTGTGTT
CCAAGATCAGCTTCTTCAGCTAGCTTCCAGCTATGAAGAAACGTGCCGAA
AATACCTCGAGCGAACACGCGGGCTCTGGGAACAGCATTCCGTGGATGCA
AAGTTAGCGAGCAGAGTGGAGTCTTGGGCGTCACGAATACAACCGATCCT
GGATGAGGAAGAGAAGCGACCAGAATTCGACATAGCTGCATACGGGCAAC
GAATTCTCGGCCAATTCCGGGAGAGAAAGGACAAACAGGGGGTGAGTGAG
ATGGCAATGAGCGCGGTGTTTCACGGTTGTAGTACGTATGATGTATGTCG
CAATTTCTTGGCCACACTCCAACTTGCAAACTCTTGCGCAATCGAGATTG
TCCCACCGCCTCACTGCTCGGTGTCAGACCCGACGGTTCGTCTTATTTGC
CAGGCTCCAAGCGCTACAACACCAGTGAAACCACGGTCCAAGCGCTTGAG
ACAGTCAGGTGGGACGCCGCATACTGCAAAACGTGCTCCCCTCCGTCAGA
GACTAGACATGTAG