Gcaud8566.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGcaud8566.t1
Unique NameGcaud8566.t1
TypemRNA
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length265
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_15_length_84509_cov_4.337096contigNODE_15_length_84509_cov_4.337096:26657..27806 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog45351.EDO44103
Preferred nameTBP
PFAMsTBP
Max annot lvl33208|Metazoa
KEGG koko:K03120
KEGG Pathwayko03022,ko05016,ko05165,ko05166,ko05168,ko05169,ko05203,map03022,map05016,map05165,map05166,map05168,map05169,map05203
GOsGO:0000120,GO:0000126,GO:0000228,GO:0000428,GO:0000785,GO:0000790,GO:0000791,GO:0000976,GO:0000977,GO:0000978,GO:0000981,GO:0000987,GO:0000988,GO:0000989,GO:0000992,GO:0001006,GO:0001012,GO:0001016,GO:0001032,GO:0001034,GO:0001047,GO:0001067,GO:0001076,GO:0001085,GO:0001091,GO:0001092,GO:0001093,GO:0001098,GO:0001099,GO:0001103,GO:0001129,GO:0001132,GO:0001939,GO:0001940,GO:0002376,GO:0002520,GO:0003674,GO:0003676,GO:0003677,GO:0003680,GO:0003682,GO:0003690,GO:0003700,GO:0005102,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005666,GO:0005667,GO:0005669,GO:0005672,GO:0005694,GO:0005719,GO:0005730,GO:0005737,GO:0006139,GO:0006351,GO:0006352,GO:0006353,GO:0006355,GO:0006357,GO:0006359,GO:0006360,GO:0006361,GO:0006363,GO:0006366,GO:0006367,GO:0006383,GO:0006399,GO:0006401,GO:0006402,GO:0006725,GO:0006807,GO:0007275,GO:0007369,GO:0007389,GO:0008134,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009058,GO:0009059,GO:0009301,GO:0009304,GO:0009653,GO:0009790,GO:0009792,GO:0009880,GO:0009889,GO:0009890,GO:0009891,GO:0009892,GO:0009893,GO:0009966,GO:0009987,GO:0010467,GO:0010468,GO:0010556,GO:0010557,GO:0010558,GO:0010604,GO:0010605,GO:0010628,GO:0010629,GO:0010646,GO:0016043,GO:0016070,GO:0016071,GO:0016073,GO:0016591,GO:0017162,GO:0018130,GO:0019219,GO:0019222,GO:0019438,GO:0019439,GO:0019899,GO:0022607,GO:0023051,GO:0030097,GO:0030880,GO:0031323,GO:0031324,GO:0031325,GO:0031326,GO:0031327,GO:0031328,GO:0031334,GO:0031974,GO:0031981,GO:0032501,GO:0032502,GO:0032774,GO:0032991,GO:0032993,GO:0034622,GO:0034641,GO:0034645,GO:0034654,GO:0034655,GO:0034660,GO:0040029,GO:0042795,GO:0042796,GO:0042797,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043254,GO:0043565,GO:0043933,GO:0044085,GO:0044087,GO:0044089,GO:0044212,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044260,GO:0044265,GO:0044270,GO:0044271,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044446,GO:0044451,GO:0044452,GO:0044454,GO:0044464,GO:0044798,GO:0045120,GO:0045815,GO:0045892,GO:0045893,GO:0045934,GO:0045935,GO:0045944,GO:0046483,GO:0046700,GO:0048513,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048534,GO:0048583,GO:0048598,GO:0048731,GO:0048856,GO:0050789,GO:0050794,GO:0051123,GO:0051128,GO:0051130,GO:0051171,GO:0051172,GO:0051173,GO:0051252,GO:0051253,GO:0051254,GO:0055029,GO:0060255,GO:0060260,GO:0060261,GO:0061695,GO:0065003,GO:0065004,GO:0065007,GO:0070013,GO:0070491,GO:0070897,GO:0071704,GO:0071824,GO:0071840,GO:0080090,GO:0090304,GO:0090575,GO:0090576,GO:0097159,GO:0097550,GO:0097659,GO:0098781,GO:0140110,GO:1901360,GO:1901361,GO:1901362,GO:1901363,GO:1901575,GO:1901576,GO:1901796,GO:1902494,GO:1902531,GO:1902679,GO:1902680,GO:1903506,GO:1903507,GO:1903508,GO:1990234,GO:1990837,GO:2000112,GO:2000113,GO:2000142,GO:2000144,GO:2001141
Evalue7.81e-92
EggNOG OGsCOG2101@1|root,KOG3302@2759|Eukaryota,38BPR@33154|Opisthokonta,3BBTG@33208|Metazoa
DescriptionTATA box binding protein
COG categoryK
BRITEko00000,ko00001,ko03000,ko03021
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud8566Gcaud8566Gracilaria caudata M_176_S67 malegeneNODE_15_length_84509_cov_4.337096 26657..27806 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud8566.t1Gcaud8566.t1Gracilaria caudata M_176_S67 malepolypeptideNODE_15_length_84509_cov_4.337096 26657..27806 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud8566.t1.start1Gcaud8566.t1.start1Gracilaria caudata M_176_S67 malestart_codonNODE_15_length_84509_cov_4.337096 26657..26659 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud8566.t1.CDS1Gcaud8566.t1.CDS1Gracilaria caudata M_176_S67 maleCDSNODE_15_length_84509_cov_4.337096 26657..26672 +
Gcaud8566.t1.CDS2Gcaud8566.t1.CDS2Gracilaria caudata M_176_S67 maleCDSNODE_15_length_84509_cov_4.337096 26936..27040 +
Gcaud8566.t1.CDS3Gcaud8566.t1.CDS3Gracilaria caudata M_176_S67 maleCDSNODE_15_length_84509_cov_4.337096 27133..27806 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud8566.t1.exon1Gcaud8566.t1.exon1Gracilaria caudata M_176_S67 maleexonNODE_15_length_84509_cov_4.337096 26657..26672 +
Gcaud8566.t1.exon2Gcaud8566.t1.exon2Gracilaria caudata M_176_S67 maleexonNODE_15_length_84509_cov_4.337096 26936..27040 +
Gcaud8566.t1.exon3Gcaud8566.t1.exon3Gracilaria caudata M_176_S67 maleexonNODE_15_length_84509_cov_4.337096 27133..27806 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud8566.t1.intron1Gcaud8566.t1.intron1Gracilaria caudata M_176_S67 maleintronNODE_15_length_84509_cov_4.337096 26673..26935 +
Gcaud8566.t1.intron2Gcaud8566.t1.intron2Gracilaria caudata M_176_S67 maleintronNODE_15_length_84509_cov_4.337096 27041..27132 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud8566.t1.stop1Gcaud8566.t1.stop1Gracilaria caudata M_176_S67 malestop_codonNODE_15_length_84509_cov_4.337096 27804..27806 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gcaud8566.t1 ID=Gcaud8566.t1|Name=Gcaud8566.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=265bp
LLVSDVVLCLLLIDAPKQLHLQPLHSRRELSLCLAQHLCDASSHSAAGPS
TAKPQTDIIPQPSPSTDPAKPQGPHTSGRLSHGITPEIQNVVATTNLDVK
LDLKKIALRARNAEYNPKRFAAVIMRIREPKTTALIFSSGKIVVTGAKSE
RESSRASRKYAKIVHKLGYDDAKFKEFTVQNIVASCDVNFPVRLEGLAHA
HSQFCSYEPELFPGLIYRMIKPKIVLLIFVSGKVVLTGAKVRNDIYEAFD
NIYHVLQTFRKLKH*
back to top

spliced messenger RNA

>Gcaud8566.t1 ID=Gcaud8566.t1|Name=Gcaud8566.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=795bp|location=Sequence derived from alignment at NODE_15_length_84509_cov_4.337096:26657..27806+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
TTGCTGGTCTCAGACGTCGTGTTGTGCTTACTTCTCATCGACGCTCCGAA
GCAACTCCACTTGCAACCACTACATTCCCGTCGCGAACTTTCGCTTTGCC
TGGCGCAACACTTGTGTGACGCCTCATCCCATAGTGCCGCCGGTCCGTCC
ACGGCAAAGCCGCAAACAGACATTATCCCGCAACCAAGTCCGTCTACAGA
CCCTGCTAAACCACAAGGTCCACACACCAGTGGTCGTCTCAGTCACGGCA
TTACCCCCGAGATTCAAAATGTGGTGGCCACGACCAACCTGGATGTAAAA
CTCGATCTTAAGAAGATTGCCTTGCGCGCGAGAAATGCCGAGTACAATCC
AAAGCGTTTTGCCGCCGTTATCATGCGAATTCGCGAACCTAAGACCACAG
CCTTGATTTTCTCCTCAGGCAAAATAGTTGTAACGGGTGCCAAGTCAGAA
CGTGAATCCAGTCGCGCGTCAAGAAAGTACGCAAAGATTGTTCACAAACT
TGGCTATGATGATGCCAAGTTTAAGGAATTCACTGTGCAAAACATCGTTG
CCAGTTGCGATGTAAACTTCCCCGTTCGTTTGGAGGGCTTGGCCCATGCG
CACAGTCAGTTCTGCAGTTATGAGCCCGAACTCTTTCCCGGCCTCATCTA
TAGGATGATCAAGCCGAAGATCGTATTGCTTATCTTTGTCTCGGGCAAAG
TTGTTCTCACGGGTGCCAAGGTTCGCAACGACATATATGAAGCTTTCGAC
AACATATATCACGTGCTACAAACATTCCGCAAACTGAAACACTAG
back to top

protein sequence of Gcaud8566.t1

>Gcaud8566.t1 ID=Gcaud8566.t1|Name=Gcaud8566.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=265bp
LLVSDVVLCLLLIDAPKQLHLQPLHSRRELSLCLAQHLCDASSHSAAGPS
TAKPQTDIIPQPSPSTDPAKPQGPHTSGRLSHGITPEIQNVVATTNLDVK
LDLKKIALRARNAEYNPKRFAAVIMRIREPKTTALIFSSGKIVVTGAKSE
RESSRASRKYAKIVHKLGYDDAKFKEFTVQNIVASCDVNFPVRLEGLAHA
HSQFCSYEPELFPGLIYRMIKPKIVLLIFVSGKVVLTGAKVRNDIYEAFD
NIYHVLQTFRKLKH*
back to top

mRNA from alignment at NODE_15_length_84509_cov_4.337096:26657..27806+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gcaud8566.t1 ID=Gcaud8566.t1|Name=Gcaud8566.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1150bp|location=Sequence derived from alignment at NODE_15_length_84509_cov_4.337096:26657..27806+ (Gracilaria caudata M_176_S67 male)
TTGCTGGTCTCAGACGGTGAGTTGCTTGTGCTTTCTTTCGTCGCGCTTCT
GCTGCGAACGAGCGCTGGTTCTTGCCTTCCATCGTCCTCCATACTTCCGC
GCTGCACGTATCTTTGTCATGTTTCTCCTTCCTTTACTGACTTACTGCGA
CGCCCTTTCCCCTCCTTCGCGCCCTTGGCTGTCACTGCTCTGGCTCGTCG
TTGCGTTCCGTTGCTTTCACGCCGCGCCGTCGCATTCTTCGCGCTTGCGT
CCTCTACATGTGCCTGTTACCATGTACAGTCGTGTTGTGCTTACTTCTCA
TCGACGCTCCGAAGCAACTCCACTTGCAACCACTACATTCCCGTCGCGAA
CTTTCGCTTTGCCTGGCGCAACACTTGTGTGACGGTGAAGTGTCCGATTC
GCGCTAACCAAAACGCCTAACAACACAATGCAGGTCCAACCTAGCTTCCA
ACCTAACAATCCTGCCGAAACACCAGCCTCATCCCATAGTGCCGCCGGTC
CGTCCACGGCAAAGCCGCAAACAGACATTATCCCGCAACCAAGTCCGTCT
ACAGACCCTGCTAAACCACAAGGTCCACACACCAGTGGTCGTCTCAGTCA
CGGCATTACCCCCGAGATTCAAAATGTGGTGGCCACGACCAACCTGGATG
TAAAACTCGATCTTAAGAAGATTGCCTTGCGCGCGAGAAATGCCGAGTAC
AATCCAAAGCGTTTTGCCGCCGTTATCATGCGAATTCGCGAACCTAAGAC
CACAGCCTTGATTTTCTCCTCAGGCAAAATAGTTGTAACGGGTGCCAAGT
CAGAACGTGAATCCAGTCGCGCGTCAAGAAAGTACGCAAAGATTGTTCAC
AAACTTGGCTATGATGATGCCAAGTTTAAGGAATTCACTGTGCAAAACAT
CGTTGCCAGTTGCGATGTAAACTTCCCCGTTCGTTTGGAGGGCTTGGCCC
ATGCGCACAGTCAGTTCTGCAGTTATGAGCCCGAACTCTTTCCCGGCCTC
ATCTATAGGATGATCAAGCCGAAGATCGTATTGCTTATCTTTGTCTCGGG
CAAAGTTGTTCTCACGGGTGCCAAGGTTCGCAACGACATATATGAAGCTT
TCGACAACATATATCACGTGCTACAAACATTCCGCAAACTGAAACACTAG
back to top

Coding sequence (CDS) from alignment at NODE_15_length_84509_cov_4.337096:26657..27806+

>Gcaud8566.t1 ID=Gcaud8566.t1|Name=Gcaud8566.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=795bp|location=Sequence derived from alignment at NODE_15_length_84509_cov_4.337096:26657..27806+ (Gracilaria caudata M_176_S67 male)
TTGCTGGTCTCAGACGTCGTGTTGTGCTTACTTCTCATCGACGCTCCGAA
GCAACTCCACTTGCAACCACTACATTCCCGTCGCGAACTTTCGCTTTGCC
TGGCGCAACACTTGTGTGACGCCTCATCCCATAGTGCCGCCGGTCCGTCC
ACGGCAAAGCCGCAAACAGACATTATCCCGCAACCAAGTCCGTCTACAGA
CCCTGCTAAACCACAAGGTCCACACACCAGTGGTCGTCTCAGTCACGGCA
TTACCCCCGAGATTCAAAATGTGGTGGCCACGACCAACCTGGATGTAAAA
CTCGATCTTAAGAAGATTGCCTTGCGCGCGAGAAATGCCGAGTACAATCC
AAAGCGTTTTGCCGCCGTTATCATGCGAATTCGCGAACCTAAGACCACAG
CCTTGATTTTCTCCTCAGGCAAAATAGTTGTAACGGGTGCCAAGTCAGAA
CGTGAATCCAGTCGCGCGTCAAGAAAGTACGCAAAGATTGTTCACAAACT
TGGCTATGATGATGCCAAGTTTAAGGAATTCACTGTGCAAAACATCGTTG
CCAGTTGCGATGTAAACTTCCCCGTTCGTTTGGAGGGCTTGGCCCATGCG
CACAGTCAGTTCTGCAGTTATGAGCCCGAACTCTTTCCCGGCCTCATCTA
TAGGATGATCAAGCCGAAGATCGTATTGCTTATCTTTGTCTCGGGCAAAG
TTGTTCTCACGGGTGCCAAGGTTCGCAACGACATATATGAAGCTTTCGAC
AACATATATCACGTGCTACAAACATTCCGCAAACTGAAACACTAG
back to top