Gcaud856.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud856.t1
Unique Name	Gcaud856.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	198

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_9802_length_594_cov_4.226640	contig	NODE_9802_length_594_cov_4.226640:2..594 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	130081.XP_005705877.1
PFAMs	Pkinase
Max annot lvl	2759\|Eukaryota
KEGG ko	ko:K08818
Evalue	4.91e-90
EggNOG OGs	KOG0663@1\|root,KOG0663@2759\|Eukaryota
EC	2.7.11.22
Description	cyclin-dependent protein serine/threonine kinase activity
COG category	T
BRITE	ko00000,ko01000,ko01001,ko03041

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud856	Gcaud856	Gracilaria caudata M_176_S67 male	gene	NODE_9802_length_594_cov_4.226640 2..594 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud856.t1.CDS1	Gcaud856.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_9802_length_594_cov_4.226640 2..594 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud856.t1.exon1	Gcaud856.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_9802_length_594_cov_4.226640 2..594 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud856.t1	Gcaud856.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_9802_length_594_cov_4.226640 2..594 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_9802_length_594_cov_4.226640:2..594+
coding sequence from alignment at NODE_9802_length_594_cov_4.226640:2..594+

mRNA sequence

>Gcaud856.t1 ID=Gcaud856.t1|Name=Gcaud856.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=198bp
XRSVECYQRLNFIDEGTYGRVFRARDLQSGRIYALKQVKLGQHKDGFPTT
ALREIATLFSVHHENVVNLREVVVGSTTDKIYLVMEYAEHDLLSLLERMK
RPYSASEIKSLMLQLLRGVAHLHDNWILHRDLKPSNLLLTGGGVLKICDF
GLARNYGDPLSKYSQGVVTLWYRAPELLMGSTIYSTAVDMWAVGCILA

spliced messenger RNA

>Gcaud856.t1 ID=Gcaud856.t1|Name=Gcaud856.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=593bp|location=Sequence derived from alignment at NODE_9802_length_594_cov_4.226640:2..594+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
gccgcagcgtggaatgttatcaacgcctgaatttcattgatgagggtaca
tatggccgtgtgttccgcgcacgggacctacagagcGGACGCATCTATGc
tctcaaacaagtgaaactcgggcaacacaaagacggctttccaacaactg
cgctgcgggagatcgcgaccCTTTTCTCCGTTCATCATGAAAACGTCGTC
AACTTGCGCGAGGTGGTTGTAGGCTCGACGACTGACAAGATCTACCTTGT
catggagtatgctgaacatgatctgctgagcttgctcgagcgcatgaaac
gaccatattccgcgtctgagatcaagtcactcatgctacagttgcttcgt
ggtgtcgcccatcttcacgacaactggATTCTGCACAGGGACCTCAAGCC
GTCTAATTTGCTTCTCACCGGTGGGGGTGTATTGAAGATATGTGACTTTG
GACTGGCCCGTAACTACGGCGACCCGCTCTCCAAGTATTCACAAGGTGTG
GTCACCCTATGGTACAGAGCTCCAGAACTACTCATGGGCTCAACAATATA
CTCAACCGCCGTTGACATGTGGGCCGTGGGTTGCATCTTGGCA

protein sequence of Gcaud856.t1

>Gcaud856.t1 ID=Gcaud856.t1|Name=Gcaud856.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=198bp
XRSVECYQRLNFIDEGTYGRVFRARDLQSGRIYALKQVKLGQHKDGFPTT
ALREIATLFSVHHENVVNLREVVVGSTTDKIYLVMEYAEHDLLSLLERMK
RPYSASEIKSLMLQLLRGVAHLHDNWILHRDLKPSNLLLTGGGVLKICDF
GLARNYGDPLSKYSQGVVTLWYRAPELLMGSTIYSTAVDMWAVGCILA

mRNA from alignment at NODE_9802_length_594_cov_4.226640:2..594+

Legend: CDSpolypeptideexon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud856.t1 ID=Gcaud856.t1|Name=Gcaud856.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=593bp|location=Sequence derived from alignment at NODE_9802_length_594_cov_4.226640:2..594+ (Gracilaria caudata M_176_S67 male)
gccgcagcgtggaatgttatcaacgcctgaatttcattgatgagggtaca
tatggccgtgtgttccgcgcacgggacctacagagcGGACGCATCTATGc
tctcaaacaagtgaaactcgggcaacacaaagacggctttccaacaactg
cgctgcgggagatcgcgaccCTTTTCTCCGTTCATCATGAAAACGTCGTC
AACTTGCGCGAGGTGGTTGTAGGCTCGACGACTGACAAGATCTACCTTGT
catggagtatgctgaacatgatctgctgagcttgctcgagcgcatgaaac
gaccatattccgcgtctgagatcaagtcactcatgctacagttgcttcgt
ggtgtcgcccatcttcacgacaactggATTCTGCACAGGGACCTCAAGCC
GTCTAATTTGCTTCTCACCGGTGGGGGTGTATTGAAGATATGTGACTTTG
GACTGGCCCGTAACTACGGCGACCCGCTCTCCAAGTATTCACAAGGTGTG
GTCACCCTATGGTACAGAGCTCCAGAACTACTCATGGGCTCAACAATATA
CTCAACCGCCGTTGACATGTGGGCCGTGGGTTGCATCTTGGCA

Coding sequence (CDS) from alignment at NODE_9802_length_594_cov_4.226640:2..594+

>Gcaud856.t1 ID=Gcaud856.t1|Name=Gcaud856.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=593bp|location=Sequence derived from alignment at NODE_9802_length_594_cov_4.226640:2..594+ (Gracilaria caudata M_176_S67 male)
gccgcagcgtggaatgttatcaacgcctgaatttcattgatgagggtaca
tatggccgtgtgttccgcgcacgggacctacagagcGGACGCATCTATGc
tctcaaacaagtgaaactcgggcaacacaaagacggctttccaacaactg
cgctgcgggagatcgcgaccCTTTTCTCCGTTCATCATGAAAACGTCGTC
AACTTGCGCGAGGTGGTTGTAGGCTCGACGACTGACAAGATCTACCTTGT
catggagtatgctgaacatgatctgctgagcttgctcgagcgcatgaaac
gaccatattccgcgtctgagatcaagtcactcatgctacagttgcttcgt
ggtgtcgcccatcttcacgacaactggATTCTGCACAGGGACCTCAAGCC
GTCTAATTTGCTTCTCACCGGTGGGGGTGTATTGAAGATATGTGACTTTG
GACTGGCCCGTAACTACGGCGACCCGCTCTCCAAGTATTCACAAGGTGTG
GTCACCCTATGGTACAGAGCTCCAGAACTACTCATGGGCTCAACAATATA
CTCAACCGCCGTTGACATGTGGGCCGTGGGTTGCATCTTGGCA