Gcaud8559.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGcaud8559.t1
Unique NameGcaud8559.t1
TypemRNA
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length195
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_15_length_84509_cov_4.337096contigNODE_15_length_84509_cov_4.337096:12626..13210 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005704631.1
PFAMsRibosomal_S7
Max annot lvl2759|Eukaryota
KEGG koko:K02989
KEGG Pathwayko03010,map03010
KEGG ModuleM00177
Evalue2.12e-110
EggNOG OGsCOG0049@1|root,KOG3291@2759|Eukaryota
DescriptionrRNA binding
COG categoryJ
BRITEbr01610,ko00000,ko00001,ko00002,ko03011
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud8559Gcaud8559Gracilaria caudata M_176_S67 malegeneNODE_15_length_84509_cov_4.337096 12626..13210 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud8559.t1.start1Gcaud8559.t1.start1Gracilaria caudata M_176_S67 malestart_codonNODE_15_length_84509_cov_4.337096 12626..12628 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud8559.t1.CDS1Gcaud8559.t1.CDS1Gracilaria caudata M_176_S67 maleCDSNODE_15_length_84509_cov_4.337096 12626..13210 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud8559.t1.exon1Gcaud8559.t1.exon1Gracilaria caudata M_176_S67 maleexonNODE_15_length_84509_cov_4.337096 12626..13210 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud8559.t1.stop1Gcaud8559.t1.stop1Gracilaria caudata M_176_S67 malestop_codonNODE_15_length_84509_cov_4.337096 13208..13210 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud8559.t1Gcaud8559.t1Gracilaria caudata M_176_S67 malepolypeptideNODE_15_length_84509_cov_4.337096 12626..13210 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gcaud8559.t1 ID=Gcaud8559.t1|Name=Gcaud8559.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=195bp
MAVVSEVKLFNRWSFEDVRVEDICLNDYIAVNQRSAVYLPHTAGRYNAKR
FRKAQCPIVERLVCSLMMHGRNNGKKIMAVRIVKHCFEIIHLLTDQNPIQ
VLVEAVVNSGPREDSTRIGSAGTVRRQAVDVSPMRRINVALYLLCTGARE
AAFRSIKTIAECLADELINAAKGSSNSYAIKKKDEVERVAKANR*
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spliced messenger RNA

>Gcaud8559.t1 ID=Gcaud8559.t1|Name=Gcaud8559.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=585bp|location=Sequence derived from alignment at NODE_15_length_84509_cov_4.337096:12626..13210+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCCGTCGTCAGTGAAGTCAAGCTCTTTAACAGATGGTCCTTCGAAGA
TGTTCGTGTCGAAGATATCTGTCTTAATGATTACATTGCCGTCAATCAAC
GCAGCGCCGTCTACCTTCCCCACACAGCTGGTCGTTACAACGCCAAGCGA
TTCCGAAAAGCGCAATGTCCAATCGTCGAGCGTCTCGTCTGTTCCCTCAT
GATGCACGGTAGGAACAACGGAAAGAAGATCATGGCAGTTCGTATTGTCA
AACATTGTTTCGAAATCATCCACTTGCTCACCGATCAGAACCCGATTCAA
GTGCTCGTCGAGGCTGTTGTTAACTCGGGTCCTAGAGAAGATTCTACTCG
TATTGGATCGGCTGGTACCGTTCGTCGTCAGGCTGTTGATGTCTCTCCTA
TGCGTCGCATTAACGTTGCCTTGTATTTGTTGTGTACCGGCGCTCGTGAA
GCTGCTTTCCGATCGATTAAGACCATTGCAGAGTGTCTGGCTGATGAACT
TATTAACGCCGCCAAGGGATCGAGCAATTCGTATGCCATCAAGAAGAAGG
ATGAAGTAGAACGTGTGGCAAAGGCTAATCGTTAA
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protein sequence of Gcaud8559.t1

>Gcaud8559.t1 ID=Gcaud8559.t1|Name=Gcaud8559.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=195bp
MAVVSEVKLFNRWSFEDVRVEDICLNDYIAVNQRSAVYLPHTAGRYNAKR
FRKAQCPIVERLVCSLMMHGRNNGKKIMAVRIVKHCFEIIHLLTDQNPIQ
VLVEAVVNSGPREDSTRIGSAGTVRRQAVDVSPMRRINVALYLLCTGARE
AAFRSIKTIAECLADELINAAKGSSNSYAIKKKDEVERVAKANR*
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mRNA from alignment at NODE_15_length_84509_cov_4.337096:12626..13210+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gcaud8559.t1 ID=Gcaud8559.t1|Name=Gcaud8559.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=585bp|location=Sequence derived from alignment at NODE_15_length_84509_cov_4.337096:12626..13210+ (Gracilaria caudata M_176_S67 male)
ATGGCCGTCGTCAGTGAAGTCAAGCTCTTTAACAGATGGTCCTTCGAAGA
TGTTCGTGTCGAAGATATCTGTCTTAATGATTACATTGCCGTCAATCAAC
GCAGCGCCGTCTACCTTCCCCACACAGCTGGTCGTTACAACGCCAAGCGA
TTCCGAAAAGCGCAATGTCCAATCGTCGAGCGTCTCGTCTGTTCCCTCAT
GATGCACGGTAGGAACAACGGAAAGAAGATCATGGCAGTTCGTATTGTCA
AACATTGTTTCGAAATCATCCACTTGCTCACCGATCAGAACCCGATTCAA
GTGCTCGTCGAGGCTGTTGTTAACTCGGGTCCTAGAGAAGATTCTACTCG
TATTGGATCGGCTGGTACCGTTCGTCGTCAGGCTGTTGATGTCTCTCCTA
TGCGTCGCATTAACGTTGCCTTGTATTTGTTGTGTACCGGCGCTCGTGAA
GCTGCTTTCCGATCGATTAAGACCATTGCAGAGTGTCTGGCTGATGAACT
TATTAACGCCGCCAAGGGATCGAGCAATTCGTATGCCATCAAGAAGAAGG
ATGAAGTAGAACGTGTGGCAAAGGCTAATCGTTAA
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Coding sequence (CDS) from alignment at NODE_15_length_84509_cov_4.337096:12626..13210+

>Gcaud8559.t1 ID=Gcaud8559.t1|Name=Gcaud8559.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=585bp|location=Sequence derived from alignment at NODE_15_length_84509_cov_4.337096:12626..13210+ (Gracilaria caudata M_176_S67 male)
ATGGCCGTCGTCAGTGAAGTCAAGCTCTTTAACAGATGGTCCTTCGAAGA
TGTTCGTGTCGAAGATATCTGTCTTAATGATTACATTGCCGTCAATCAAC
GCAGCGCCGTCTACCTTCCCCACACAGCTGGTCGTTACAACGCCAAGCGA
TTCCGAAAAGCGCAATGTCCAATCGTCGAGCGTCTCGTCTGTTCCCTCAT
GATGCACGGTAGGAACAACGGAAAGAAGATCATGGCAGTTCGTATTGTCA
AACATTGTTTCGAAATCATCCACTTGCTCACCGATCAGAACCCGATTCAA
GTGCTCGTCGAGGCTGTTGTTAACTCGGGTCCTAGAGAAGATTCTACTCG
TATTGGATCGGCTGGTACCGTTCGTCGTCAGGCTGTTGATGTCTCTCCTA
TGCGTCGCATTAACGTTGCCTTGTATTTGTTGTGTACCGGCGCTCGTGAA
GCTGCTTTCCGATCGATTAAGACCATTGCAGAGTGTCTGGCTGATGAACT
TATTAACGCCGCCAAGGGATCGAGCAATTCGTATGCCATCAAGAAGAAGG
ATGAAGTAGAACGTGTGGCAAAGGCTAATCGTTAA
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