Gcaud8557.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGcaud8557.t1
Unique NameGcaud8557.t1
TypemRNA
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length492
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_15_length_84509_cov_4.337096contigNODE_15_length_84509_cov_4.337096:6885..8360 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005708566.1
Preferred nameAHCYL1
PFAMsAdoHcyase,AdoHcyase_NAD
Max annot lvl2759|Eukaryota
KEGG rclassRC00041,RC00056,RC00069,RC00475,RC00476,RC01161,RC01243,RC02264
KEGG koko:K01251,ko:K03927
KEGG ReactionR00192,R04936,R08220,R08255,R08258
KEGG Pathwayko00270,ko00983,ko01100,map00270,map00983,map01100
KEGG ModuleM00035
GOsGO:0000096,GO:0000097,GO:0000166,GO:0001666,GO:0002028,GO:0002376,GO:0002437,GO:0002439,GO:0002544,GO:0003674,GO:0003824,GO:0004013,GO:0005488,GO:0005507,GO:0005515,GO:0005575,GO:0005576,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005783,GO:0005789,GO:0005829,GO:0005856,GO:0005886,GO:0005938,GO:0006082,GO:0006139,GO:0006152,GO:0006378,GO:0006396,GO:0006397,GO:0006520,GO:0006534,GO:0006555,GO:0006575,GO:0006611,GO:0006629,GO:0006638,GO:0006639,GO:0006641,GO:0006644,GO:0006650,GO:0006656,GO:0006725,GO:0006732,GO:0006790,GO:0006793,GO:0006796,GO:0006807,GO:0006810,GO:0006886,GO:0006913,GO:0006950,GO:0006952,GO:0006954,GO:0006955,GO:0007154,GO:0007163,GO:0007165,GO:0007186,GO:0007584,GO:0007610,GO:0007622,GO:0007623,GO:0008016,GO:0008104,GO:0008150,GO:0008152,GO:0008610,GO:0008652,GO:0008654,GO:0009056,GO:0009058,GO:0009063,GO:0009066,GO:0009069,GO:0009116,GO:0009119,GO:0009164,GO:0009605,GO:0009628,GO:0009719,GO:0009725,GO:0009987,GO:0009991,GO:0010033,GO:0010035,GO:0010038,GO:0010243,GO:0010467,GO:0010468,GO:0010765,GO:0010959,GO:0012505,GO:0015031,GO:0015629,GO:0015833,GO:0016020,GO:0016053,GO:0016054,GO:0016070,GO:0016071,GO:0016259,GO:0016324,GO:0016787,GO:0016801,GO:0016802,GO:0017076,GO:0017144,GO:0019219,GO:0019222,GO:0019439,GO:0019510,GO:0019637,GO:0019752,GO:0022898,GO:0023051,GO:0023052,GO:0030551,GO:0030552,GO:0030554,GO:0031002,GO:0031012,GO:0031123,GO:0031124,GO:0031323,GO:0031440,GO:0031667,GO:0031984,GO:0032259,GO:0032409,GO:0032412,GO:0032432,GO:0032553,GO:0032555,GO:0032559,GO:0032870,GO:0032879,GO:0033036,GO:0033353,GO:0034613,GO:0034641,GO:0034655,GO:0034656,GO:0034762,GO:0034765,GO:0036094,GO:0036293,GO:0038166,GO:0042044,GO:0042045,GO:0042175,GO:0042219,GO:0042221,GO:0042278,GO:0042454,GO:0042745,GO:0042802,GO:0042886,GO:0042995,GO:0043005,GO:0043167,GO:0043168,GO:0043169,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043269,GO:0043270,GO:0043434,GO:0043436,GO:0043621,GO:0043631,GO:0044057,GO:0044070,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044255,GO:0044270,GO:0044272,GO:0044273,GO:0044281,GO:0044282,GO:0044283,GO:0044421,GO:0044422,GO:0044424,GO:0044425,GO:0044430,GO:0044432,GO:0044444,GO:0044446,GO:0044459,GO:0044464,GO:0045017,GO:0045177,GO:0045184,GO:0046128,GO:0046130,GO:0046394,GO:0046395,GO:0046439,GO:0046470,GO:0046474,GO:0046483,GO:0046486,GO:0046498,GO:0046500,GO:0046700,GO:0046872,GO:0046907,GO:0046914,GO:0048037,GO:0048511,GO:0048512,GO:0048518,GO:0050662,GO:0050667,GO:0050684,GO:0050789,GO:0050794,GO:0050896,GO:0051049,GO:0051050,GO:0051168,GO:0051169,GO:0051171,GO:0051179,GO:0051186,GO:0051187,GO:0051234,GO:0051239,GO:0051252,GO:0051287,GO:0051592,GO:0051641,GO:0051649,GO:0051716,GO:0055086,GO:0060255,GO:0062039,GO:0062040,GO:0065007,GO:0065009,GO:0070482,GO:0070633,GO:0070727,GO:0070887,GO:0071268,GO:0071310,GO:0071375,GO:0071417,GO:0071495,GO:0071702,GO:0071704,GO:0071705,GO:0071944,GO:0072521,GO:0072523,GO:0080090,GO:0090304,GO:0090407,GO:0097159,GO:0097164,GO:0097367,GO:0097458,GO:0098590,GO:0098604,GO:0098827,GO:0099568,GO:0120025,GO:1901135,GO:1901136,GO:1901265,GO:1901360,GO:1901361,GO:1901363,GO:1901564,GO:1901565,GO:1901566,GO:1901575,GO:1901576,GO:1901605,GO:1901606,GO:1901607,GO:1901652,GO:1901653,GO:1901657,GO:1901658,GO:1901698,GO:1901699,GO:1901700,GO:1901701,GO:1903311,GO:1903522,GO:1903779,GO:1904385,GO:1990776
Evalue7.25e-279
EggNOG OGsCOG0499@1|root,KOG1370@2759|Eukaryota
EC3.1.1.1,3.1.1.56,3.1.1.84,3.3.1.1
Descriptionadenosylhomocysteinase activity
COG categoryH
CAZyCE10
BiGG ReactioniRC1080.CRv4_Au5_s3_g11226_t1
BRITEko00000,ko00001,ko00002,ko01000,ko01009,ko04147
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud8557Gcaud8557Gracilaria caudata M_176_S67 malegeneNODE_15_length_84509_cov_4.337096 6885..8360 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud8557.t1.stop1Gcaud8557.t1.stop1Gracilaria caudata M_176_S67 malestop_codonNODE_15_length_84509_cov_4.337096 6885..6887 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud8557.t1.CDS1Gcaud8557.t1.CDS1Gracilaria caudata M_176_S67 maleCDSNODE_15_length_84509_cov_4.337096 6885..8360 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud8557.t1.exon1Gcaud8557.t1.exon1Gracilaria caudata M_176_S67 maleexonNODE_15_length_84509_cov_4.337096 6885..8360 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud8557.t1.start1Gcaud8557.t1.start1Gracilaria caudata M_176_S67 malestart_codonNODE_15_length_84509_cov_4.337096 8358..8360 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud8557.t1Gcaud8557.t1Gracilaria caudata M_176_S67 malepolypeptideNODE_15_length_84509_cov_4.337096 6885..8360 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gcaud8557.t1 ID=Gcaud8557.t1|Name=Gcaud8557.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=492bp
MTATETTTVKAVSPLPESEYKVKDMGLAEFGRKEMDMAEVEMPGLMACRD
EMGAKKPLSGAKVMGSLHMTIQTAVLIETLKELGADIRWCSCNIFSTQDH
AAAAVVAKGTASVFAWKGENLEEYWWCTNRALTWPDGSGPDIIVDDGGDA
TLLIHEGFKAEIAFEKDGTLPDPDSTDNAEFKVVLRTIRDGLKENPKRWH
DVVDKMVGVSEETTTGVHRLIERARDGTLLFPAINVNDSVTKSKFDNVYG
CRHSLPDGIMRATDVMLAGKTVMICGYGDVGKGSAQAMKAAGARCLVAEI
DPICALQATMEGFQVARLEDVISEVDIVITATGNKDIVLVKHMEKMKNNA
IVGNIGHFDNEIDIAGLESYEGITKIEIKPQVHRWVFPDGHGVIMLAEGR
LMNLGCATGHPSFVMSCSFTNQTLAQVELWENRASGKYENNVYILPKVLD
EKVARLHLKHLNAKLTELSPHQAEYIGIASTGPFKPESYRY*
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spliced messenger RNA

>Gcaud8557.t1 ID=Gcaud8557.t1|Name=Gcaud8557.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1476bp|location=Sequence derived from alignment at NODE_15_length_84509_cov_4.337096:6885..8360- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGACTGCTACTGAGACTACCACCGTGAAGGCGGTTTCGCCGCTGCCGGA
GTCCGAGTACAAGGTGAAGGACATGGGTCTCGCCGAATTCGGGCGCAAGG
AAATGGACATGGCCGAGGTGGAGATGCCCGGATTGATGGCGTGTCGCGAC
GAGATGGGCGCCAAGAAGCCGCTGTCCGGAGCAAAGGTGATGGGATCTCT
GCACATGACCATTCAGACTGCCGTGCTCATTGAGACTCTCAAGGAGCTTG
GTGCTGACATTCGTTGGTGCTCTTGCAATATCTTCTCTACTCAGGACCAT
GCCGCCGCGGCTGTGGTGGCTAAGGGAACTGCGTCGGTGTTTGCTTGGAA
GGGAGAAAATCTTGAGGAATACTGGTGGTGTACTAACAGAGCGCTGACCT
GGCCCGATGGCTCTGGTCCCGATATTATTGTGGATGATGGTGGAGATGCT
ACGCTTTTGATTCATGAGGGTTTCAAGGCTGAGATTGCTTTTGAGAAGGA
TGGAACTCTGCCGGACCCTGATTCTACCGACAATGCTGAGTTCAAGGTGG
TTCTGAGGACCATTCGTGACGGACTGAAGGAAAACCCGAAGCGTTGGCAC
GATGTGGTTGATAAGATGGTTGGTGTATCTGAGGAAACTACAACTGGTGT
ACATCGTCTGATCGAACGTGCACGAGATGGAACATTGTTATTCCCGGCTA
TTAACGTTAACGACAGTGTGACAAAGAGCAAGTTTGATAACGTGTATGGG
TGCCGTCATTCGCTTCCGGACGGTATCATGAGGGCCACTGATGTGATGCT
TGCCGGTAAGACCGTCATGATTTGCGGCTATGGTGATGTCGGAAAGGGAT
CCGCTCAGGCCATGAAAGCTGCAGGCGCTCGTTGTCTGGTGGCCGAAATT
GACCCCATCTGCGCGTTGCAGGCTACCATGGAAGGCTTCCAAGTTGCGCG
TCTGGAGGATGTGATTTCTGAAGTTGACATTGTGATCACTGCCACTGGAA
ACAAGGACATTGTGCTTGTGAAGCACATGGAAAAGATGAAGAACAACGCC
ATTGTGGGTAACATTGGTCACTTTGACAACGAGATTGATATTGCTGGTCT
GGAATCGTATGAAGGCATCACTAAGATTGAAATCAAGCCGCAGGTTCACA
GGTGGGTGTTCCCTGACGGACACGGCGTCATTATGCTTGCCGAGGGCCGT
CTGATGAACCTCGGCTGCGCCACCGGTCACCCGAGCTTTGTGATGAGCTG
CTCGTTCACCAACCAGACGCTGGCGCAGGTGGAGCTGTGGGAAAACCGTG
CTTCCGGCAAGTACGAGAACAATGTGTACATCCTGCCCAAGGTGCTGGAT
GAGAAGGTGGCGCGTCTGCATCTGAAGCATCTGAATGCTAAGCTGACTGA
GCTGTCTCCTCATCAGGCGGAGTATATTGGTATTGCATCCACTGGTCCGT
TCAAGCCGGAGAGCTACAGGTACTAG
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protein sequence of Gcaud8557.t1

>Gcaud8557.t1 ID=Gcaud8557.t1|Name=Gcaud8557.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=492bp
MTATETTTVKAVSPLPESEYKVKDMGLAEFGRKEMDMAEVEMPGLMACRD
EMGAKKPLSGAKVMGSLHMTIQTAVLIETLKELGADIRWCSCNIFSTQDH
AAAAVVAKGTASVFAWKGENLEEYWWCTNRALTWPDGSGPDIIVDDGGDA
TLLIHEGFKAEIAFEKDGTLPDPDSTDNAEFKVVLRTIRDGLKENPKRWH
DVVDKMVGVSEETTTGVHRLIERARDGTLLFPAINVNDSVTKSKFDNVYG
CRHSLPDGIMRATDVMLAGKTVMICGYGDVGKGSAQAMKAAGARCLVAEI
DPICALQATMEGFQVARLEDVISEVDIVITATGNKDIVLVKHMEKMKNNA
IVGNIGHFDNEIDIAGLESYEGITKIEIKPQVHRWVFPDGHGVIMLAEGR
LMNLGCATGHPSFVMSCSFTNQTLAQVELWENRASGKYENNVYILPKVLD
EKVARLHLKHLNAKLTELSPHQAEYIGIASTGPFKPESYRY*
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mRNA from alignment at NODE_15_length_84509_cov_4.337096:6885..8360-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gcaud8557.t1 ID=Gcaud8557.t1|Name=Gcaud8557.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1476bp|location=Sequence derived from alignment at NODE_15_length_84509_cov_4.337096:6885..8360- (Gracilaria caudata M_176_S67 male)
ATGACTGCTACTGAGACTACCACCGTGAAGGCGGTTTCGCCGCTGCCGGA
GTCCGAGTACAAGGTGAAGGACATGGGTCTCGCCGAATTCGGGCGCAAGG
AAATGGACATGGCCGAGGTGGAGATGCCCGGATTGATGGCGTGTCGCGAC
GAGATGGGCGCCAAGAAGCCGCTGTCCGGAGCAAAGGTGATGGGATCTCT
GCACATGACCATTCAGACTGCCGTGCTCATTGAGACTCTCAAGGAGCTTG
GTGCTGACATTCGTTGGTGCTCTTGCAATATCTTCTCTACTCAGGACCAT
GCCGCCGCGGCTGTGGTGGCTAAGGGAACTGCGTCGGTGTTTGCTTGGAA
GGGAGAAAATCTTGAGGAATACTGGTGGTGTACTAACAGAGCGCTGACCT
GGCCCGATGGCTCTGGTCCCGATATTATTGTGGATGATGGTGGAGATGCT
ACGCTTTTGATTCATGAGGGTTTCAAGGCTGAGATTGCTTTTGAGAAGGA
TGGAACTCTGCCGGACCCTGATTCTACCGACAATGCTGAGTTCAAGGTGG
TTCTGAGGACCATTCGTGACGGACTGAAGGAAAACCCGAAGCGTTGGCAC
GATGTGGTTGATAAGATGGTTGGTGTATCTGAGGAAACTACAACTGGTGT
ACATCGTCTGATCGAACGTGCACGAGATGGAACATTGTTATTCCCGGCTA
TTAACGTTAACGACAGTGTGACAAAGAGCAAGTTTGATAACGTGTATGGG
TGCCGTCATTCGCTTCCGGACGGTATCATGAGGGCCACTGATGTGATGCT
TGCCGGTAAGACCGTCATGATTTGCGGCTATGGTGATGTCGGAAAGGGAT
CCGCTCAGGCCATGAAAGCTGCAGGCGCTCGTTGTCTGGTGGCCGAAATT
GACCCCATCTGCGCGTTGCAGGCTACCATGGAAGGCTTCCAAGTTGCGCG
TCTGGAGGATGTGATTTCTGAAGTTGACATTGTGATCACTGCCACTGGAA
ACAAGGACATTGTGCTTGTGAAGCACATGGAAAAGATGAAGAACAACGCC
ATTGTGGGTAACATTGGTCACTTTGACAACGAGATTGATATTGCTGGTCT
GGAATCGTATGAAGGCATCACTAAGATTGAAATCAAGCCGCAGGTTCACA
GGTGGGTGTTCCCTGACGGACACGGCGTCATTATGCTTGCCGAGGGCCGT
CTGATGAACCTCGGCTGCGCCACCGGTCACCCGAGCTTTGTGATGAGCTG
CTCGTTCACCAACCAGACGCTGGCGCAGGTGGAGCTGTGGGAAAACCGTG
CTTCCGGCAAGTACGAGAACAATGTGTACATCCTGCCCAAGGTGCTGGAT
GAGAAGGTGGCGCGTCTGCATCTGAAGCATCTGAATGCTAAGCTGACTGA
GCTGTCTCCTCATCAGGCGGAGTATATTGGTATTGCATCCACTGGTCCGT
TCAAGCCGGAGAGCTACAGGTACTAG
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Coding sequence (CDS) from alignment at NODE_15_length_84509_cov_4.337096:6885..8360-

>Gcaud8557.t1 ID=Gcaud8557.t1|Name=Gcaud8557.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1476bp|location=Sequence derived from alignment at NODE_15_length_84509_cov_4.337096:6885..8360- (Gracilaria caudata M_176_S67 male)
ATGACTGCTACTGAGACTACCACCGTGAAGGCGGTTTCGCCGCTGCCGGA
GTCCGAGTACAAGGTGAAGGACATGGGTCTCGCCGAATTCGGGCGCAAGG
AAATGGACATGGCCGAGGTGGAGATGCCCGGATTGATGGCGTGTCGCGAC
GAGATGGGCGCCAAGAAGCCGCTGTCCGGAGCAAAGGTGATGGGATCTCT
GCACATGACCATTCAGACTGCCGTGCTCATTGAGACTCTCAAGGAGCTTG
GTGCTGACATTCGTTGGTGCTCTTGCAATATCTTCTCTACTCAGGACCAT
GCCGCCGCGGCTGTGGTGGCTAAGGGAACTGCGTCGGTGTTTGCTTGGAA
GGGAGAAAATCTTGAGGAATACTGGTGGTGTACTAACAGAGCGCTGACCT
GGCCCGATGGCTCTGGTCCCGATATTATTGTGGATGATGGTGGAGATGCT
ACGCTTTTGATTCATGAGGGTTTCAAGGCTGAGATTGCTTTTGAGAAGGA
TGGAACTCTGCCGGACCCTGATTCTACCGACAATGCTGAGTTCAAGGTGG
TTCTGAGGACCATTCGTGACGGACTGAAGGAAAACCCGAAGCGTTGGCAC
GATGTGGTTGATAAGATGGTTGGTGTATCTGAGGAAACTACAACTGGTGT
ACATCGTCTGATCGAACGTGCACGAGATGGAACATTGTTATTCCCGGCTA
TTAACGTTAACGACAGTGTGACAAAGAGCAAGTTTGATAACGTGTATGGG
TGCCGTCATTCGCTTCCGGACGGTATCATGAGGGCCACTGATGTGATGCT
TGCCGGTAAGACCGTCATGATTTGCGGCTATGGTGATGTCGGAAAGGGAT
CCGCTCAGGCCATGAAAGCTGCAGGCGCTCGTTGTCTGGTGGCCGAAATT
GACCCCATCTGCGCGTTGCAGGCTACCATGGAAGGCTTCCAAGTTGCGCG
TCTGGAGGATGTGATTTCTGAAGTTGACATTGTGATCACTGCCACTGGAA
ACAAGGACATTGTGCTTGTGAAGCACATGGAAAAGATGAAGAACAACGCC
ATTGTGGGTAACATTGGTCACTTTGACAACGAGATTGATATTGCTGGTCT
GGAATCGTATGAAGGCATCACTAAGATTGAAATCAAGCCGCAGGTTCACA
GGTGGGTGTTCCCTGACGGACACGGCGTCATTATGCTTGCCGAGGGCCGT
CTGATGAACCTCGGCTGCGCCACCGGTCACCCGAGCTTTGTGATGAGCTG
CTCGTTCACCAACCAGACGCTGGCGCAGGTGGAGCTGTGGGAAAACCGTG
CTTCCGGCAAGTACGAGAACAATGTGTACATCCTGCCCAAGGTGCTGGAT
GAGAAGGTGGCGCGTCTGCATCTGAAGCATCTGAATGCTAAGCTGACTGA
GCTGTCTCCTCATCAGGCGGAGTATATTGGTATTGCATCCACTGGTCCGT
TCAAGCCGGAGAGCTACAGGTACTAG
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