Gcaud8553.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud8553.t1
Unique Name	Gcaud8553.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	614

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_162_length_42220_cov_4.454604	contig	NODE_162_length_42220_cov_4.454604:29803..31644 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud8553	Gcaud8553	Gracilaria caudata M_176_S67 male	gene	NODE_162_length_42220_cov_4.454604 29803..31644 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud8553.t1.stop1	Gcaud8553.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_162_length_42220_cov_4.454604 29803..29805 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud8553.t1.CDS1	Gcaud8553.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_162_length_42220_cov_4.454604 29803..31644 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud8553.t1.exon1	Gcaud8553.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_162_length_42220_cov_4.454604 29803..31644 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud8553.t1.start1	Gcaud8553.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_162_length_42220_cov_4.454604 31642..31644 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud8553.t1	Gcaud8553.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_162_length_42220_cov_4.454604 29803..31644 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_162_length_42220_cov_4.454604:29803..31644-
coding sequence from alignment at NODE_162_length_42220_cov_4.454604:29803..31644-

mRNA sequence

>Gcaud8553.t1 ID=Gcaud8553.t1|Name=Gcaud8553.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=614bp
MPASRRVVLEQLAQYERAIKLFNDFDAMVDVAYLLLYEPNAPNDVSRAFQ
LLERAIKQAHHPHAMNVLAVYLHNNGNSTQRQRVTPLLEQSVRIQLNYKV
LQNLANTLYRGECGVREVPRAVQLLQRAIAISNDPQCMADLATIILKEKK
VVGDKKYALDLYKRAIRLSNDASLMNNLGVIYMDGTAHVSSCDCCAAKWF
ERAIQTADLPTTKYNYASLLVNSNRIKRDPVRATRLLEQAVNDRACEDFI
IGLADIYETCEQVLDFQRAVHLYQRAYSEYDSVLALSRLIYILAFGRDGV
AMDLSTAYQLCKSYYRRTKRHTFLMIQACILWSGTRDVPRNPLRASKICA
RYHDVGHDALALMMRCGAPNVPINLQKSKQLSTDLVEVNRLFLNGLLLSE
GAYDEQKYQQAQQRFQAVLDIDEEQLRNDFVWLPLCARIGNIMLPYMGDA
ERVPNSLKRFEQVHNVSILNRASIYLEQNSGDQAVRMYESLMETDIRDIA
MVNLGYVLREGVGGVEKDRERAKQLFESCVKEYKNLFANALFVDMLVEGN
VLSEDANKAGIKVWQSVVEDYPDEAELHILDHLLSENGRRIVSSGAFSED
NRSRESTSGNKAA*

spliced messenger RNA

>Gcaud8553.t1 ID=Gcaud8553.t1|Name=Gcaud8553.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1842bp|location=Sequence derived from alignment at NODE_162_length_42220_cov_4.454604:29803..31644- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCCGGCTAGTCGTCGCGTCGTGCTGGAACAACTGGCTCAGTATGAACG
CGCCATCAAGCTCTTCAACGATTTCGATGCGATGGTTGATGTTGCCTACC
TTCTTCTTTACGAACCCAACGCTCCCAACGACGTTTCCAGGGCCTTCCAA
TTGCTCGAACGCGCCATCAAACAAGCGCACCACCCGCACGCTATGAACGT
GCTCGCCGTGTACTTGCACAATAACGGCAACTCTACGCAGCGTCAACGAG
TCACCCCTCTGTTGGAGCAGTCCGTGCGAATTCAACTCAACTACAAGGTG
CTGCAGAACCTTGCCAACACTCTCTATCGCGGCGAGTGTGGCGTCCGAGA
AGTTCCTCGTGCCGTCCAACTGCTGCAACGTGCCATCGCGATTTCGAATG
ATCCTCAATGCATGGCCGATCTTGCAACTATCATACTCAAGGAAAAGAAA
GTTGTTGGCGATAAGAAGTACGCCTTGGATCTGTACAAACGAGCCATTCG
ACTCTCTAACGATGCCAGTCTCATGAACAATCTTGGTGTCATCTACATGG
ATGGCACTGCTCATGTCTCGTCGTGTGATTGTTGTGCTGCCAAATGGTTC
GAACGTGCCATTCAAACCGCTGACCTTCCTACCACAAAGTACAATTACGC
TTCACTGCTTGTCAATAGCAATCGCATCAAAAGAGATCCCGTTCGAGCCA
CCCGTCTTTTAGAGCAAGCTGTGAACGACCGCGCCTGCGAGGATTTCATA
ATTGGTCTCGCAGATATCTATGAAACCTGTGAACAAGTGCTTGATTTTCA
AAGGGCAGTTCACTTGTACCAACGAGCCTACTCCGAGTATGATTCCGTTC
TCGCATTGAGTAGACTCATTTATATCCTGGCATTTGGCCGAGACGGCGTT
GCCATGGACCTTAGCACGGCGTACCAGCTTTGCAAGAGTTATTACCGACG
CACCAAACGGCACACCTTTTTGATGATTCAGGCTTGTATCCTATGGAGTG
GAACTCGTGATGTACCTCGCAATCCGTTGCGGGCCTCCAAGATTTGCGCG
AGATACCATGATGTCGGACATGATGCCTTGGCGTTGATGATGCGCTGTGG
CGCCCCAAACGTCCCGATCAACCTGCAAAAGTCCAAACAATTGTCAACTG
ATTTGGTGGAAGTCAATCGTTTGTTCTTGAATGGTCTGCTTCTTAGTGAA
GGTGCATATGATGAACAAAAGTACCAGCAAGCTCAACAAAGGTTTCAAGC
TGTGTTGGACATCGACGAGGAGCAATTACGAAACGATTTTGTTTGGTTGC
CGTTGTGCGCGCGGATTGGAAACATTATGCTGCCGTACATGGGCGATGCT
GAGCGCGTTCCCAACAGTTTGAAGCGCTTTGAACAGGTGCATAACGTCAG
CATCTTAAATCGGGCTAGCATATATCTTGAGCAAAATTCGGGCGATCAAG
CTGTGCGCATGTATGAGTCGTTGATGGAAACAGATATACGAGATATCGCA
ATGGTCAACCTTGGATATGTGCTCCGAGAAGGTGTGGGCGGTGTTGAAAA
GGACAGAGAACGTGCAAAACAGCTGTTTGAGAGTTGTGTCAAGGAATACA
AGAATTTGTTTGCGAACGCTTTGTTTGTGGATATGTTGGTGGAGGGAAAC
GTTTTGAGTGAAGATGCAAACAAGGCTGGTATCAAAGTCTGGCAATCGGT
CGTGGAAGATTACCCGGACGAAGCAGAGCTTCATATTTTGGACCACCTGC
TTTCGGAAAATGGAAGACGGATCGTCTCTAGCGGCGCGTTTTCCGAAGAT
AATCGTAGCCGAGAAAGTACATCGGGTAACAAGGCTGCATGA

protein sequence of Gcaud8553.t1

>Gcaud8553.t1 ID=Gcaud8553.t1|Name=Gcaud8553.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=614bp
MPASRRVVLEQLAQYERAIKLFNDFDAMVDVAYLLLYEPNAPNDVSRAFQ
LLERAIKQAHHPHAMNVLAVYLHNNGNSTQRQRVTPLLEQSVRIQLNYKV
LQNLANTLYRGECGVREVPRAVQLLQRAIAISNDPQCMADLATIILKEKK
VVGDKKYALDLYKRAIRLSNDASLMNNLGVIYMDGTAHVSSCDCCAAKWF
ERAIQTADLPTTKYNYASLLVNSNRIKRDPVRATRLLEQAVNDRACEDFI
IGLADIYETCEQVLDFQRAVHLYQRAYSEYDSVLALSRLIYILAFGRDGV
AMDLSTAYQLCKSYYRRTKRHTFLMIQACILWSGTRDVPRNPLRASKICA
RYHDVGHDALALMMRCGAPNVPINLQKSKQLSTDLVEVNRLFLNGLLLSE
GAYDEQKYQQAQQRFQAVLDIDEEQLRNDFVWLPLCARIGNIMLPYMGDA
ERVPNSLKRFEQVHNVSILNRASIYLEQNSGDQAVRMYESLMETDIRDIA
MVNLGYVLREGVGGVEKDRERAKQLFESCVKEYKNLFANALFVDMLVEGN
VLSEDANKAGIKVWQSVVEDYPDEAELHILDHLLSENGRRIVSSGAFSED
NRSRESTSGNKAA*

mRNA from alignment at NODE_162_length_42220_cov_4.454604:29803..31644-

Legend: polypeptideCDSexonstart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud8553.t1 ID=Gcaud8553.t1|Name=Gcaud8553.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1842bp|location=Sequence derived from alignment at NODE_162_length_42220_cov_4.454604:29803..31644- (Gracilaria caudata M_176_S67 male)
ATGCCGGCTAGTCGTCGCGTCGTGCTGGAACAACTGGCTCAGTATGAACG
CGCCATCAAGCTCTTCAACGATTTCGATGCGATGGTTGATGTTGCCTACC
TTCTTCTTTACGAACCCAACGCTCCCAACGACGTTTCCAGGGCCTTCCAA
TTGCTCGAACGCGCCATCAAACAAGCGCACCACCCGCACGCTATGAACGT
GCTCGCCGTGTACTTGCACAATAACGGCAACTCTACGCAGCGTCAACGAG
TCACCCCTCTGTTGGAGCAGTCCGTGCGAATTCAACTCAACTACAAGGTG
CTGCAGAACCTTGCCAACACTCTCTATCGCGGCGAGTGTGGCGTCCGAGA
AGTTCCTCGTGCCGTCCAACTGCTGCAACGTGCCATCGCGATTTCGAATG
ATCCTCAATGCATGGCCGATCTTGCAACTATCATACTCAAGGAAAAGAAA
GTTGTTGGCGATAAGAAGTACGCCTTGGATCTGTACAAACGAGCCATTCG
ACTCTCTAACGATGCCAGTCTCATGAACAATCTTGGTGTCATCTACATGG
ATGGCACTGCTCATGTCTCGTCGTGTGATTGTTGTGCTGCCAAATGGTTC
GAACGTGCCATTCAAACCGCTGACCTTCCTACCACAAAGTACAATTACGC
TTCACTGCTTGTCAATAGCAATCGCATCAAAAGAGATCCCGTTCGAGCCA
CCCGTCTTTTAGAGCAAGCTGTGAACGACCGCGCCTGCGAGGATTTCATA
ATTGGTCTCGCAGATATCTATGAAACCTGTGAACAAGTGCTTGATTTTCA
AAGGGCAGTTCACTTGTACCAACGAGCCTACTCCGAGTATGATTCCGTTC
TCGCATTGAGTAGACTCATTTATATCCTGGCATTTGGCCGAGACGGCGTT
GCCATGGACCTTAGCACGGCGTACCAGCTTTGCAAGAGTTATTACCGACG
CACCAAACGGCACACCTTTTTGATGATTCAGGCTTGTATCCTATGGAGTG
GAACTCGTGATGTACCTCGCAATCCGTTGCGGGCCTCCAAGATTTGCGCG
AGATACCATGATGTCGGACATGATGCCTTGGCGTTGATGATGCGCTGTGG
CGCCCCAAACGTCCCGATCAACCTGCAAAAGTCCAAACAATTGTCAACTG
ATTTGGTGGAAGTCAATCGTTTGTTCTTGAATGGTCTGCTTCTTAGTGAA
GGTGCATATGATGAACAAAAGTACCAGCAAGCTCAACAAAGGTTTCAAGC
TGTGTTGGACATCGACGAGGAGCAATTACGAAACGATTTTGTTTGGTTGC
CGTTGTGCGCGCGGATTGGAAACATTATGCTGCCGTACATGGGCGATGCT
GAGCGCGTTCCCAACAGTTTGAAGCGCTTTGAACAGGTGCATAACGTCAG
CATCTTAAATCGGGCTAGCATATATCTTGAGCAAAATTCGGGCGATCAAG
CTGTGCGCATGTATGAGTCGTTGATGGAAACAGATATACGAGATATCGCA
ATGGTCAACCTTGGATATGTGCTCCGAGAAGGTGTGGGCGGTGTTGAAAA
GGACAGAGAACGTGCAAAACAGCTGTTTGAGAGTTGTGTCAAGGAATACA
AGAATTTGTTTGCGAACGCTTTGTTTGTGGATATGTTGGTGGAGGGAAAC
GTTTTGAGTGAAGATGCAAACAAGGCTGGTATCAAAGTCTGGCAATCGGT
CGTGGAAGATTACCCGGACGAAGCAGAGCTTCATATTTTGGACCACCTGC
TTTCGGAAAATGGAAGACGGATCGTCTCTAGCGGCGCGTTTTCCGAAGAT
AATCGTAGCCGAGAAAGTACATCGGGTAACAAGGCTGCATGA

Coding sequence (CDS) from alignment at NODE_162_length_42220_cov_4.454604:29803..31644-

>Gcaud8553.t1 ID=Gcaud8553.t1|Name=Gcaud8553.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1842bp|location=Sequence derived from alignment at NODE_162_length_42220_cov_4.454604:29803..31644- (Gracilaria caudata M_176_S67 male)
ATGCCGGCTAGTCGTCGCGTCGTGCTGGAACAACTGGCTCAGTATGAACG
CGCCATCAAGCTCTTCAACGATTTCGATGCGATGGTTGATGTTGCCTACC
TTCTTCTTTACGAACCCAACGCTCCCAACGACGTTTCCAGGGCCTTCCAA
TTGCTCGAACGCGCCATCAAACAAGCGCACCACCCGCACGCTATGAACGT
GCTCGCCGTGTACTTGCACAATAACGGCAACTCTACGCAGCGTCAACGAG
TCACCCCTCTGTTGGAGCAGTCCGTGCGAATTCAACTCAACTACAAGGTG
CTGCAGAACCTTGCCAACACTCTCTATCGCGGCGAGTGTGGCGTCCGAGA
AGTTCCTCGTGCCGTCCAACTGCTGCAACGTGCCATCGCGATTTCGAATG
ATCCTCAATGCATGGCCGATCTTGCAACTATCATACTCAAGGAAAAGAAA
GTTGTTGGCGATAAGAAGTACGCCTTGGATCTGTACAAACGAGCCATTCG
ACTCTCTAACGATGCCAGTCTCATGAACAATCTTGGTGTCATCTACATGG
ATGGCACTGCTCATGTCTCGTCGTGTGATTGTTGTGCTGCCAAATGGTTC
GAACGTGCCATTCAAACCGCTGACCTTCCTACCACAAAGTACAATTACGC
TTCACTGCTTGTCAATAGCAATCGCATCAAAAGAGATCCCGTTCGAGCCA
CCCGTCTTTTAGAGCAAGCTGTGAACGACCGCGCCTGCGAGGATTTCATA
ATTGGTCTCGCAGATATCTATGAAACCTGTGAACAAGTGCTTGATTTTCA
AAGGGCAGTTCACTTGTACCAACGAGCCTACTCCGAGTATGATTCCGTTC
TCGCATTGAGTAGACTCATTTATATCCTGGCATTTGGCCGAGACGGCGTT
GCCATGGACCTTAGCACGGCGTACCAGCTTTGCAAGAGTTATTACCGACG
CACCAAACGGCACACCTTTTTGATGATTCAGGCTTGTATCCTATGGAGTG
GAACTCGTGATGTACCTCGCAATCCGTTGCGGGCCTCCAAGATTTGCGCG
AGATACCATGATGTCGGACATGATGCCTTGGCGTTGATGATGCGCTGTGG
CGCCCCAAACGTCCCGATCAACCTGCAAAAGTCCAAACAATTGTCAACTG
ATTTGGTGGAAGTCAATCGTTTGTTCTTGAATGGTCTGCTTCTTAGTGAA
GGTGCATATGATGAACAAAAGTACCAGCAAGCTCAACAAAGGTTTCAAGC
TGTGTTGGACATCGACGAGGAGCAATTACGAAACGATTTTGTTTGGTTGC
CGTTGTGCGCGCGGATTGGAAACATTATGCTGCCGTACATGGGCGATGCT
GAGCGCGTTCCCAACAGTTTGAAGCGCTTTGAACAGGTGCATAACGTCAG
CATCTTAAATCGGGCTAGCATATATCTTGAGCAAAATTCGGGCGATCAAG
CTGTGCGCATGTATGAGTCGTTGATGGAAACAGATATACGAGATATCGCA
ATGGTCAACCTTGGATATGTGCTCCGAGAAGGTGTGGGCGGTGTTGAAAA
GGACAGAGAACGTGCAAAACAGCTGTTTGAGAGTTGTGTCAAGGAATACA
AGAATTTGTTTGCGAACGCTTTGTTTGTGGATATGTTGGTGGAGGGAAAC
GTTTTGAGTGAAGATGCAAACAAGGCTGGTATCAAAGTCTGGCAATCGGT
CGTGGAAGATTACCCGGACGAAGCAGAGCTTCATATTTTGGACCACCTGC
TTTCGGAAAATGGAAGACGGATCGTCTCTAGCGGCGCGTTTTCCGAAGAT
AATCGTAGCCGAGAAAGTACATCGGGTAACAAGGCTGCATGA