Gcaud8551.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGcaud8551.t1
Unique NameGcaud8551.t1
TypemRNA
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length510
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_162_length_42220_cov_4.454604contigNODE_162_length_42220_cov_4.454604:17562..19255 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog981085.XP_010097441.1
PFAMsAmino_oxidase
Max annot lvl35493|Streptophyta
KEGG rclassRC00053,RC00225
KEGG koko:K13366
KEGG ReactionR01914,R09076
KEGG Pathwayko00330,ko00410,ko01100,map00330,map00410,map01100
GOsGO:0000166,GO:0003674,GO:0003824,GO:0005488,GO:0006576,GO:0006595,GO:0006598,GO:0006807,GO:0008150,GO:0008152,GO:0009056,GO:0009308,GO:0009310,GO:0009987,GO:0016491,GO:0016645,GO:0016647,GO:0034641,GO:0036094,GO:0042402,GO:0043167,GO:0043168,GO:0044106,GO:0044237,GO:0046592,GO:0048037,GO:0050660,GO:0050662,GO:0055114,GO:0071704,GO:0097159,GO:1901265,GO:1901363,GO:1901564,GO:1901565,GO:1901575
Evalue1.33e-28
EggNOG OGsCOG1231@1|root,KOG0029@2759|Eukaryota,37QM5@33090|Viridiplantae,3GBX6@35493|Streptophyta,4JH8G@91835|fabids
EC1.5.3.14,1.5.3.16
DescriptionPolyamine oxidase
COG categoryQ
BRITEko00000,ko00001,ko01000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud8551Gcaud8551Gracilaria caudata M_176_S67 malegeneNODE_162_length_42220_cov_4.454604 17562..19255 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud8551.t1Gcaud8551.t1Gracilaria caudata M_176_S67 malepolypeptideNODE_162_length_42220_cov_4.454604 17562..19255 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud8551.t1.stop1Gcaud8551.t1.stop1Gracilaria caudata M_176_S67 malestop_codonNODE_162_length_42220_cov_4.454604 17562..17564 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud8551.t1.CDS1Gcaud8551.t1.CDS1Gracilaria caudata M_176_S67 maleCDSNODE_162_length_42220_cov_4.454604 17562..18041 -
Gcaud8551.t1.CDS2Gcaud8551.t1.CDS2Gracilaria caudata M_176_S67 maleCDSNODE_162_length_42220_cov_4.454604 18206..19255 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud8551.t1.exon1Gcaud8551.t1.exon1Gracilaria caudata M_176_S67 maleexonNODE_162_length_42220_cov_4.454604 17562..18041 -
Gcaud8551.t1.exon2Gcaud8551.t1.exon2Gracilaria caudata M_176_S67 maleexonNODE_162_length_42220_cov_4.454604 18206..19255 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud8551.t1.intron1Gcaud8551.t1.intron1Gracilaria caudata M_176_S67 maleintronNODE_162_length_42220_cov_4.454604 18042..18205 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud8551.t1.start1Gcaud8551.t1.start1Gracilaria caudata M_176_S67 malestart_codonNODE_162_length_42220_cov_4.454604 19253..19255 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gcaud8551.t1 ID=Gcaud8551.t1|Name=Gcaud8551.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=510bp
MKTLIPFIAILSTVYISNSYAHVLQSPSSLLAKLNESCQVEPVIIIGAGI
AGAKVALELSKRNIPFIIVEATDRVGGRMRSVTIEPAQCSECSELRSGFR
FELGANWMQGYREGVPFFDFVDKYVKLKGTATDFDDSYFVENGTIVEDDI
ADPVWERAEDAMAKVYAFKKAVTEAKSETPMMNLASALLFAAGFEANDPI
TTSAIRFEVDFEYAVPSNDVALRNLSPIFDPEAPDSVEFFVADPRGYKAA
VDIALRQAGVPSVNRSSSMLLLNSPVRTIVYGKKRASVITRNGEEIFGSA
VVSTLPLGVLQASLLKNPKDPNAVQFVPPLSRERKLAISKLDMADYLKIF
FKQPLFTEENPLFILPLNCSEGGFLNVHNLNKKEYFPGSNAVMVTSTDAY
SRDLLCMDRKSALDDVLEYVSMAVGQKLDKDDVASFEIPHFRRDEFFRGS
YSVISPSTTKEDIVEFNKPSRTLFFAGEAHNIQGLNGYVHGAWDSGMITA
NAVAEFLRC*
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spliced messenger RNA

>Gcaud8551.t1 ID=Gcaud8551.t1|Name=Gcaud8551.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1530bp|location=Sequence derived from alignment at NODE_162_length_42220_cov_4.454604:17562..19255- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAAAACTTTGATTCCCTTCATCGCCATCCTGTCAACTGTGTACATATC
GAATTCATATGCCCACGTTCTCCAGTCCCCATCATCTCTCCTGGCAAAGC
TCAATGAGTCATGCCAGGTGGAACCGGTAATAATCATTGGAGCGGGAATT
GCGGGAGCTAAAGTAGCCCTCGAACTGTCCAAACGTAACATCCCGTTCAT
TATTGTGGAAGCAACTGACAGAGTCGGTGGTCGCATGCGGTCGGTTACTA
TCGAACCAGCACAATGCTCTGAATGTTCCGAGCTTCGTTCTGGTTTCAGG
TTTGAGCTCGGTGCAAACTGGATGCAAGGCTATCGCGAGGGAGTTCCCTT
CTTTGACTTTGTGGATAAATACGTGAAGCTAAAGGGCACTGCTACTGATT
TTGATGACTCCTACTTTGTGGAGAATGGTACCATTGTAGAGGATGATATC
GCAGATCCGGTTTGGGAACGCGCCGAAGACGCAATGGCGAAAGTGTATGC
CTTCAAGAAAGCAGTGACTGAAGCAAAATCTGAGACGCCGATGATGAACC
TTGCCTCTGCACTATTGTTTGCTGCTGGGTTTGAAGCTAACGACCCAATC
ACCACTTCAGCAATACGATTTGAAGTCGATTTTGAGTATGCGGTGCCTTC
CAACGATGTTGCCCTTCGGAATCTGAGTCCTATTTTTGATCCAGAAGCGC
CGGATTCAGTAGAGTTCTTCGTAGCCGATCCAAGAGGATACAAGGCTGCA
GTTGACATTGCGCTGAGACAAGCCGGTGTACCAAGCGTGAATAGATCTAG
CTCGATGCTGCTTCTGAATTCTCCAGTTCGGACTATTGTATACGGCAAGA
AGAGAGCTTCAGTCATTACCAGAAACGGGGAGGAAATTTTCGGTTCAGCT
GTTGTGTCGACCTTGCCTCTGGGTGTGTTGCAAGCATCGCTGCTAAAGAA
CCCAAAAGACCCCAATGCCGTTCAGTTTGTGCCGCCGTTATCGAGAGAGC
GAAAGCTGGCTATATCCAAGCTTGACATGGCAGACTATTTGAAGATATTT
TTCAAACAACCTTTGTTCACAGAGGAGAACCCGTTGTTCATACTGCCTCT
AAATTGTTCAGAGGGAGGATTTCTCAACGTGCATAATCTGAACAAGAAAG
AATACTTTCCAGGATCCAATGCGGTTATGGTTACCTCGACAGACGCGTAC
AGCAGAGATTTGCTTTGCATGGATAGAAAGAGCGCGCTCGACGACGTTTT
AGAGTATGTGTCGATGGCCGTTGGGCAGAAGTTAGATAAAGACGACGTTG
CATCGTTTGAAATACCGCATTTTCGTCGCGATGAGTTCTTCAGGGGTTCG
TACAGTGTCATCTCTCCGTCAACAACAAAGGAAGATATTGTGGAATTCAA
TAAACCAAGCCGAACGCTCTTCTTCGCTGGGGAAGCACATAACATTCAGG
GCTTGAATGGATATGTACATGGGGCGTGGGACTCAGGAATGATAACAGCG
AATGCTGTAGCTGAGTTTTTGAGGTGTTAG
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protein sequence of Gcaud8551.t1

>Gcaud8551.t1 ID=Gcaud8551.t1|Name=Gcaud8551.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=510bp
MKTLIPFIAILSTVYISNSYAHVLQSPSSLLAKLNESCQVEPVIIIGAGI
AGAKVALELSKRNIPFIIVEATDRVGGRMRSVTIEPAQCSECSELRSGFR
FELGANWMQGYREGVPFFDFVDKYVKLKGTATDFDDSYFVENGTIVEDDI
ADPVWERAEDAMAKVYAFKKAVTEAKSETPMMNLASALLFAAGFEANDPI
TTSAIRFEVDFEYAVPSNDVALRNLSPIFDPEAPDSVEFFVADPRGYKAA
VDIALRQAGVPSVNRSSSMLLLNSPVRTIVYGKKRASVITRNGEEIFGSA
VVSTLPLGVLQASLLKNPKDPNAVQFVPPLSRERKLAISKLDMADYLKIF
FKQPLFTEENPLFILPLNCSEGGFLNVHNLNKKEYFPGSNAVMVTSTDAY
SRDLLCMDRKSALDDVLEYVSMAVGQKLDKDDVASFEIPHFRRDEFFRGS
YSVISPSTTKEDIVEFNKPSRTLFFAGEAHNIQGLNGYVHGAWDSGMITA
NAVAEFLRC*
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mRNA from alignment at NODE_162_length_42220_cov_4.454604:17562..19255-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gcaud8551.t1 ID=Gcaud8551.t1|Name=Gcaud8551.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1694bp|location=Sequence derived from alignment at NODE_162_length_42220_cov_4.454604:17562..19255- (Gracilaria caudata M_176_S67 male)
ATGAAAACTTTGATTCCCTTCATCGCCATCCTGTCAACTGTGTACATATC
GAATTCATATGCCCACGTTCTCCAGTCCCCATCATCTCTCCTGGCAAAGC
TCAATGAGTCATGCCAGGTGGAACCGGTAATAATCATTGGAGCGGGAATT
GCGGGAGCTAAAGTAGCCCTCGAACTGTCCAAACGTAACATCCCGTTCAT
TATTGTGGAAGCAACTGACAGAGTCGGTGGTCGCATGCGGTCGGTTACTA
TCGAACCAGCACAATGCTCTGAATGTTCCGAGCTTCGTTCTGGTTTCAGG
TTTGAGCTCGGTGCAAACTGGATGCAAGGCTATCGCGAGGGAGTTCCCTT
CTTTGACTTTGTGGATAAATACGTGAAGCTAAAGGGCACTGCTACTGATT
TTGATGACTCCTACTTTGTGGAGAATGGTACCATTGTAGAGGATGATATC
GCAGATCCGGTTTGGGAACGCGCCGAAGACGCAATGGCGAAAGTGTATGC
CTTCAAGAAAGCAGTGACTGAAGCAAAATCTGAGACGCCGATGATGAACC
TTGCCTCTGCACTATTGTTTGCTGCTGGGTTTGAAGCTAACGACCCAATC
ACCACTTCAGCAATACGATTTGAAGTCGATTTTGAGTATGCGGTGCCTTC
CAACGATGTTGCCCTTCGGAATCTGAGTCCTATTTTTGATCCAGAAGCGC
CGGATTCAGTAGAGTTCTTCGTAGCCGATCCAAGAGGATACAAGGCTGCA
GTTGACATTGCGCTGAGACAAGCCGGTGTACCAAGCGTGAATAGATCTAG
CTCGATGCTGCTTCTGAATTCTCCAGTTCGGACTATTGTATACGGCAAGA
AGAGAGCTTCAGTCATTACCAGAAACGGGGAGGAAATTTTCGGTTCAGCT
GTTGTGTCGACCTTGCCTCTGGGTGTGTTGCAAGCATCGCTGCTAAAGAA
CCCAAAAGACCCCAATGCCGTTCAGTTTGTGCCGCCGTTATCGAGAGAGC
GAAAGCTGGCTATATCCAAGCTTGACATGGCAGACTATTTGAAGATATTT
GTGCAGTTCTTCTTCTTTATTTTGGACAACAGCCTTCAATTACTAGACTG
AAGTAAATCTTTCCTTACAGAAAGGTTTCTCTCTTTAGGAATGCTAACAA
CTTATGCGGATACTGTCGAATCAAATCTTGGAGGCTTAAATTTTGTCGCT
CTGCATTTGTGCAGTTCAAACAACCTTTGTTCACAGAGGAGAACCCGTTG
TTCATACTGCCTCTAAATTGTTCAGAGGGAGGATTTCTCAACGTGCATAA
TCTGAACAAGAAAGAATACTTTCCAGGATCCAATGCGGTTATGGTTACCT
CGACAGACGCGTACAGCAGAGATTTGCTTTGCATGGATAGAAAGAGCGCG
CTCGACGACGTTTTAGAGTATGTGTCGATGGCCGTTGGGCAGAAGTTAGA
TAAAGACGACGTTGCATCGTTTGAAATACCGCATTTTCGTCGCGATGAGT
TCTTCAGGGGTTCGTACAGTGTCATCTCTCCGTCAACAACAAAGGAAGAT
ATTGTGGAATTCAATAAACCAAGCCGAACGCTCTTCTTCGCTGGGGAAGC
ACATAACATTCAGGGCTTGAATGGATATGTACATGGGGCGTGGGACTCAG
GAATGATAACAGCGAATGCTGTAGCTGAGTTTTTGAGGTGTTAG
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Coding sequence (CDS) from alignment at NODE_162_length_42220_cov_4.454604:17562..19255-

>Gcaud8551.t1 ID=Gcaud8551.t1|Name=Gcaud8551.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1530bp|location=Sequence derived from alignment at NODE_162_length_42220_cov_4.454604:17562..19255- (Gracilaria caudata M_176_S67 male)
ATGAAAACTTTGATTCCCTTCATCGCCATCCTGTCAACTGTGTACATATC
GAATTCATATGCCCACGTTCTCCAGTCCCCATCATCTCTCCTGGCAAAGC
TCAATGAGTCATGCCAGGTGGAACCGGTAATAATCATTGGAGCGGGAATT
GCGGGAGCTAAAGTAGCCCTCGAACTGTCCAAACGTAACATCCCGTTCAT
TATTGTGGAAGCAACTGACAGAGTCGGTGGTCGCATGCGGTCGGTTACTA
TCGAACCAGCACAATGCTCTGAATGTTCCGAGCTTCGTTCTGGTTTCAGG
TTTGAGCTCGGTGCAAACTGGATGCAAGGCTATCGCGAGGGAGTTCCCTT
CTTTGACTTTGTGGATAAATACGTGAAGCTAAAGGGCACTGCTACTGATT
TTGATGACTCCTACTTTGTGGAGAATGGTACCATTGTAGAGGATGATATC
GCAGATCCGGTTTGGGAACGCGCCGAAGACGCAATGGCGAAAGTGTATGC
CTTCAAGAAAGCAGTGACTGAAGCAAAATCTGAGACGCCGATGATGAACC
TTGCCTCTGCACTATTGTTTGCTGCTGGGTTTGAAGCTAACGACCCAATC
ACCACTTCAGCAATACGATTTGAAGTCGATTTTGAGTATGCGGTGCCTTC
CAACGATGTTGCCCTTCGGAATCTGAGTCCTATTTTTGATCCAGAAGCGC
CGGATTCAGTAGAGTTCTTCGTAGCCGATCCAAGAGGATACAAGGCTGCA
GTTGACATTGCGCTGAGACAAGCCGGTGTACCAAGCGTGAATAGATCTAG
CTCGATGCTGCTTCTGAATTCTCCAGTTCGGACTATTGTATACGGCAAGA
AGAGAGCTTCAGTCATTACCAGAAACGGGGAGGAAATTTTCGGTTCAGCT
GTTGTGTCGACCTTGCCTCTGGGTGTGTTGCAAGCATCGCTGCTAAAGAA
CCCAAAAGACCCCAATGCCGTTCAGTTTGTGCCGCCGTTATCGAGAGAGC
GAAAGCTGGCTATATCCAAGCTTGACATGGCAGACTATTTGAAGATATTT
TTCAAACAACCTTTGTTCACAGAGGAGAACCCGTTGTTCATACTGCCTCT
AAATTGTTCAGAGGGAGGATTTCTCAACGTGCATAATCTGAACAAGAAAG
AATACTTTCCAGGATCCAATGCGGTTATGGTTACCTCGACAGACGCGTAC
AGCAGAGATTTGCTTTGCATGGATAGAAAGAGCGCGCTCGACGACGTTTT
AGAGTATGTGTCGATGGCCGTTGGGCAGAAGTTAGATAAAGACGACGTTG
CATCGTTTGAAATACCGCATTTTCGTCGCGATGAGTTCTTCAGGGGTTCG
TACAGTGTCATCTCTCCGTCAACAACAAAGGAAGATATTGTGGAATTCAA
TAAACCAAGCCGAACGCTCTTCTTCGCTGGGGAAGCACATAACATTCAGG
GCTTGAATGGATATGTACATGGGGCGTGGGACTCAGGAATGATAACAGCG
AATGCTGTAGCTGAGTTTTTGAGGTGTTAG
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