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Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following start_codon feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| Gcaud8550.t1.start1 | Gcaud8550.t1.start1 | Gracilaria caudata M_176_S67 male | start_codon | NODE_162_length_42220_cov_4.454604 14631..14633 + |
The following CDS feature(s) are a part of this mRNA:
The following exon feature(s) are a part of this mRNA:
The following intron feature(s) are a part of this mRNA:
The following stop_codon feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| Gcaud8550.t1.stop1 | Gcaud8550.t1.stop1 | Gracilaria caudata M_176_S67 male | stop_codon | NODE_162_length_42220_cov_4.454604 16520..16522 + |
Sequences
The following sequences are available for this feature:
mRNA sequence >Gcaud8550.t1 ID=Gcaud8550.t1|Name=Gcaud8550.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=206bp
MKRYSNGITGKKTSTEPCTAQNMISTLQSSRTNTIQSLDGSPDPSQCDSP
ARKNVAEAGEVFSDSEHRALPYFSCAFYTFYCVLYRSIWFGEWVIFACRW
TDMVLQGAFPLEPVPSIVGLSEHTGFGYDRSPPDGLRGGVPSAATRLDRP
KKAVSRGLGLLYVFNFSLSLSVPFFVSISLQAQIKGCRWTDMVLQGAFPL
EWFLV* back to topspliced messenger RNA >Gcaud8550.t1 ID=Gcaud8550.t1|Name=Gcaud8550.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=618bp|location=Sequence derived from alignment at NODE_162_length_42220_cov_4.454604:14631..16522+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.
ATGAAGCGTTATTCTAACGGCATAACTGGGAAGAAGACCTCAACTGAGCC
CTGTACTGCTCAGAATATGATTTCCACGCTGCAAAGCTCTCGCACCAACA
CAATTCAGTCACTGGATGGTTCTCCGGATCCTTCGCAGTGTGACTCACCA
GCGAGGAAAAATGTCGCAGAAGCTGGGGAGGTTTTCAGTGATTCTGAGCA
CCGTGCTCTACCTTATTTCTCTTGTGCTTTTTATACTTTCTATTGCGTTC
TCTACAGGTCTATATGGTTTGGAGAATGGGTTATATTCGCGTGTCGCTGG
ACGGATATGGTGCTCCAGGGGGCGTTCCCTCTCGAACCGGTTCCCAGTAT
AGTGGGCCTGTCGGAACATACGGGTTTCGGATACGACAGGAGTCCGCCTG
ACGGCCTGAGGGGGGGCGTCCCGTCCGCCGCCACACGGTTGGATCGACCT
AAAAAGGCTGTCAGTCGCGGGCTAGGATTACTATATGTTTTTAACTTCTC
TCTCTCTCTCTCCGTTCCTTTCTTTGTTTCTATTTCTCTACAGGCGCAGA
TAAAGGGTTGTCGCTGGACGGATATGGTGCTCCAGGGGGCGTTCCCCCTC
GAATGGTTTCTAGTATAG back to topprotein sequence of Gcaud8550.t1 >Gcaud8550.t1 ID=Gcaud8550.t1|Name=Gcaud8550.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=206bp
MKRYSNGITGKKTSTEPCTAQNMISTLQSSRTNTIQSLDGSPDPSQCDSP
ARKNVAEAGEVFSDSEHRALPYFSCAFYTFYCVLYRSIWFGEWVIFACRW
TDMVLQGAFPLEPVPSIVGLSEHTGFGYDRSPPDGLRGGVPSAATRLDRP
KKAVSRGLGLLYVFNFSLSLSVPFFVSISLQAQIKGCRWTDMVLQGAFPL
EWFLV* back to topmRNA from alignment at NODE_162_length_42220_cov_4.454604:14631..16522+ Legend: polypeptidestart_codonCDSexonintronstop_codon Hold the cursor over a type above to highlight its positions in the sequence below. >Gcaud8550.t1 ID=Gcaud8550.t1|Name=Gcaud8550.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1892bp|location=Sequence derived from alignment at NODE_162_length_42220_cov_4.454604:14631..16522+ (Gracilaria caudata M_176_S67 male)
ATGAAGCGTTATTCTAACGGCATAACTGGGAAGAAGACCTCAACTGAGCC
CTGTACTGCTCAGAATATGATTTCCACGCTGCAAAGCTCTCGCACCAACA
CAATTCAGTCACTGGATGGTTCTCCGGATCCTTCGCAGTGTGACTCACCA
GCGAGGAAAAATGTCGCAGAAGCTGGGGAGGTTTTCAGTGATTCTGAGCA
CCGGTAAGTCCCTGACTGCTTGCAGTCAGACACTGGGGTCTCCCCAGATC
AGAAGCCAACAAGCCATACCTCAGAAGTCATCGCTCCCGTTTCGGACGCT
CGTTCCGTTGCCCATGATCCTCCTTCTACGCATTAAGATTCCAAATCCGA
TGCCGAGTCTGCAGTAAACCCTTGGCGAAACTGATTCAATGGGGTTATTA
TCTACTAGACTCTAGCGAAGCTGATTCAACTGAGTCGTCAGTTATTAACT
CCAGCAGAGCTGACTTAACGGAGGTGCCAGTTTCTCCTTTGACCCCAGTT
CCCCTGCATGATACCAGTTGACCTCGTCCTATTTCTAAGCTCCACTGGAA
TTCGAGGTTGACCCTCCCGTGGTTGTGCTGTGCTGTCCCCTGCCCTTTTG
ATGTGTATCAATGCGCTGAACTGATTTAACAATTTGCAAGCCGAACAAGT
TTCCGTCGCGGTCCGAAAACTGCGTGCGCTGTGGAACGGCTCATTGGGGA
CTAGGACGATGGAGAAGCTCAGCCAGCGTGAAGATTCACGCAGAGAAAGG
CAAGCATTCAAAAAGCCGTAGCGGAGATGCATGTCTCCGATCGCTGTTGT
GTTACGTCGCAGACTTCCCAAGAGTTGGATTTCTTTTGATGAATGGCAAT
CTGGCAAATGCGTTCGGGGTTCTAACATTCATGccgttggagatctgtct
gcgttttcatttcctccgatcgcgggagagtggattcgggacgggcacaG
TGTGCCTGGCACTTCATGTGAGTGCGAGAGGCTTTGCTTTTTCCGAGTTC
CAGTATTTCTTTGAAAAGCATGCTCTTGATACTGTGTACGAAGACAGATT
ATTACACGACAATGATTGTCGTTCAGCGAAGGATCTCGCCGTGAGCAATT
TCAAAGCAAGCGAAAGATATTGCATGGCAATTTGTGATTCGAATGGCAAT
CCTCTCCGAAAGCATACGCTCGGTCAGCGAATGACAACCACTTGCATTCG
AGGAGCGCATCATCAGTATAAATACGGCCGCTGTAGTTCGCATGTACGGG
CTCGAGTCTCTCCCATCACCCCGGTGTGAAAACTAACTTTGTGCTCTGAA
GTGCTCTACCTTATTTCTCTTGTGCTTGTGCGTATTTCACTTTTCCATCA
AGTCCGGTCTAACTTCTGTTTTGTCTTGTACTGACACTTCTGTTTTCTAC
GTTGTCTGTTCGTGTGAAGTTTATACTTTCTATTGCGTTCTCTACAGGTC
TATATGGTTTGGAGAATGGGTTATATTCGCGTGTCGCTGGACGGATATGG
TGCTCCAGGGGGCGTTCCCTCTCGAACCGGTTCCCAGTATAGTGGGCCTG
TCGGAACATACGGGTTTCGGATACGACAGGAGTCCGCCTGACGGCCTGAG
GGGGGGCGTCCCGTCCGCCGCCACACGGTTGGATCGACCTAAAAAGGCTG
TCAGTCGCGGGCTAGGATTACTATATGTTTTTAACTTCTCTCTCTCTCTC
TCCGTTCGTAAGTACTTCATTCTTTCGACTTGGGCGCCACATTTTCCCAC
GGACTAACTGTTTTCTCGTTTGTGTCATTTATTGTGTGAAGCTTTCTTTG
TTTCTATTTCTCTACAGGCGCAGATAAAGGGTTGTCGCTGGACGGATATG
GTGCTCCAGGGGGCGTTCCCCCTCGAATGGTTTCTAGTATAG back to topCoding sequence (CDS) from alignment at NODE_162_length_42220_cov_4.454604:14631..16522+ >Gcaud8550.t1 ID=Gcaud8550.t1|Name=Gcaud8550.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=618bp|location=Sequence derived from alignment at NODE_162_length_42220_cov_4.454604:14631..16522+ (Gracilaria caudata M_176_S67 male)
ATGAAGCGTTATTCTAACGGCATAACTGGGAAGAAGACCTCAACTGAGCC
CTGTACTGCTCAGAATATGATTTCCACGCTGCAAAGCTCTCGCACCAACA
CAATTCAGTCACTGGATGGTTCTCCGGATCCTTCGCAGTGTGACTCACCA
GCGAGGAAAAATGTCGCAGAAGCTGGGGAGGTTTTCAGTGATTCTGAGCA
CCGTGCTCTACCTTATTTCTCTTGTGCTTTTTATACTTTCTATTGCGTTC
TCTACAGGTCTATATGGTTTGGAGAATGGGTTATATTCGCGTGTCGCTGG
ACGGATATGGTGCTCCAGGGGGCGTTCCCTCTCGAACCGGTTCCCAGTAT
AGTGGGCCTGTCGGAACATACGGGTTTCGGATACGACAGGAGTCCGCCTG
ACGGCCTGAGGGGGGGCGTCCCGTCCGCCGCCACACGGTTGGATCGACCT
AAAAAGGCTGTCAGTCGCGGGCTAGGATTACTATATGTTTTTAACTTCTC
TCTCTCTCTCTCCGTTCCTTTCTTTGTTTCTATTTCTCTACAGGCGCAGA
TAAAGGGTTGTCGCTGGACGGATATGGTGCTCCAGGGGGCGTTCCCCCTC
GAATGGTTTCTAGTATAG back to top
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