Gcaud8549.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud8549.t1
Unique Name	Gcaud8549.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	381

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_162_length_42220_cov_4.454604	contig	NODE_162_length_42220_cov_4.454604:10055..11197 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	130081.XP_005706790.1
Preferred name	ARO7
PFAMs	PDT
Max annot lvl	2759\|Eukaryota
KEGG rclass	RC03116
KEGG ko	ko:K01850
KEGG Reaction	R01715
KEGG Pathway	ko00400,ko01100,ko01110,ko01130,ko01230,map00400,map01100,map01110,map01130,map01230
KEGG Module	M00024,M00025
GOs	GO:0000162,GO:0003674,GO:0003824,GO:0004106,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0006082,GO:0006520,GO:0006558,GO:0006568,GO:0006570,GO:0006571,GO:0006576,GO:0006586,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008652,GO:0009058,GO:0009072,GO:0009073,GO:0009094,GO:0009095,GO:0009308,GO:0009309,GO:0009987,GO:0016053,GO:0016853,GO:0016866,GO:0017144,GO:0018130,GO:0019438,GO:0019752,GO:0034641,GO:0042401,GO:0042430,GO:0042435,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043436,GO:0044106,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044283,GO:0044424,GO:0044464,GO:0046219,GO:0046394,GO:0046483,GO:0071704,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607,GO:1902221,GO:1902223
Evalue	5.07e-91
EggNOG OGs	COG1605@1\|root,KOG0795@2759\|Eukaryota
EC	5.4.99.5
Description	chorismate mutase activity
COG category	E
BRITE	ko00000,ko00001,ko00002,ko01000

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud8549	Gcaud8549	Gracilaria caudata M_176_S67 male	gene	NODE_162_length_42220_cov_4.454604 10055..11197 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud8549.t1.start1	Gcaud8549.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_162_length_42220_cov_4.454604 10055..10057 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud8549.t1.CDS1	Gcaud8549.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_162_length_42220_cov_4.454604 10055..11197 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud8549.t1.exon1	Gcaud8549.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_162_length_42220_cov_4.454604 10055..11197 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud8549.t1.stop1	Gcaud8549.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_162_length_42220_cov_4.454604 11195..11197 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud8549.t1	Gcaud8549.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_162_length_42220_cov_4.454604 10055..11197 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_162_length_42220_cov_4.454604:10055..11197+
coding sequence from alignment at NODE_162_length_42220_cov_4.454604:10055..11197+

mRNA sequence

>Gcaud8549.t1 ID=Gcaud8549.t1|Name=Gcaud8549.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=381bp
MRAAPPPAPSPSTSPSPVSHPRVAALRQLRVLAAEPHVEGELDVDMNATA
FQPPVALCATSRGLSSSLRASPRRPQSRPCGRAARVVACEQAVHRQQPGV
DFYGIPNPPPGDALLLSDLRERLIRQEETIIFALIERAQFRVNEPIYTPG
AFEVPSPYGTFAHFVLFQIEQVYARVRRYTSPDEHPFAPSHLLPKPILAE
LDYPQTLKPNDINVNHDIEKVYNNFILHNICQSGDDQNYGSSATCDVACL
QALSKRIHYGKFIAEAKCQENELLYKQLASARDRDAIWHQLSNEQVERVL
LKRVENKARSYGSDISVHGPRDVFKVDPATISDMYKKFIIPLTKLVEVEY
IIQRYEGINYEEHAHHQKDAFVANRMQWTT*

spliced messenger RNA

>Gcaud8549.t1 ID=Gcaud8549.t1|Name=Gcaud8549.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1143bp|location=Sequence derived from alignment at NODE_162_length_42220_cov_4.454604:10055..11197+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCGcgccgcgccgccgcccgcaccgtcgccgtcgacatcgccgtcacc
tgtctcgcacccacgcgtcgccgcgctgcgccAGTTGCGTGTGCTTGCTG
CTGAGCCGCACGTTGAGGGCGAGCTTGACGTTGATATGAACGCCACTGCG
TTTCAGCCGCCTGTCGCGCTGTGCGCGACCTCCCGGGGGTTGTCGTCCTC
GCTGCGTGCTTCGCCGCGTCGGCCGCAGTCGCGCCCGTGCGGACGCGCTG
CGCGCGTGGTGGCTTGTGAACAGGCTGTGCATCGACAGCAACCGGGTGTG
GATTTCTATGGCATTCCCAACCCGCCGCCGGGCGACGCGTTGTTGTTGTC
GGATCTGCGCGAGCGTCTTATCCGTCAGGAGGAGACCATTATCTTTGCGC
TTATTGAGCGTGCGCAGTTTCGAGTGAATGAGCCCATTTATACGCCGGGT
GCGTTTGAGGTGCCGTCGCCTTATGGAACGTTTGCGCACTTTGTGCTGTT
CCAGATCGAGCAGGTGTATGCTAGGGTGAGGAGATATACGTCGCCGGATG
AGCACCCGTTTGCGCCGTCGCATTTGTTGCCAAAGCCTATCCTCGCTGAA
CTTGATTATCCGCAAACTCTAAAACCGAATGATATCAATGTGAACCACGA
CATCGAGAAGGTATACAACAACTTCATTTTGCACAACATCTGTCAATCGG
GAGACGATCAGAACTACGGAAGTTCTGCCACCTGTGACGTTGCCTGTCTG
CAGGCGCTGTCCAAGAGAATTCACTACGGAAAGTTTATTGCGGAGGCAAA
GTGTCAAGAGAATGAGCTGCTGTACAAGCAGCTGGCGTCCGCGAGAGACC
GGGACGCCATCTGGCATCAACTGTCCAACGAACAAGTGGAGCGCGTGCTG
CTTAAGCGAGTCGAAAACAAGGCCAGAAGTTATGGCTCCGACATCAGCGT
GCATGGTCCTAGAGATGTGTTCAAGGTCGACCCAGCAACCATCTCAGACA
TGTACAAAAAGTTTATCATCCCGCTCACCAAGTTGGTCGAGGTCGAGTAC
ATCATCCAGAGATATGAGGGCATCAATTATGAGGAACATGCACATCACCA
AAAGGACGCCTTCGTCGCCAATAGAATGCAATGGACAACCTAA

protein sequence of Gcaud8549.t1

>Gcaud8549.t1 ID=Gcaud8549.t1|Name=Gcaud8549.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=381bp
MRAAPPPAPSPSTSPSPVSHPRVAALRQLRVLAAEPHVEGELDVDMNATA
FQPPVALCATSRGLSSSLRASPRRPQSRPCGRAARVVACEQAVHRQQPGV
DFYGIPNPPPGDALLLSDLRERLIRQEETIIFALIERAQFRVNEPIYTPG
AFEVPSPYGTFAHFVLFQIEQVYARVRRYTSPDEHPFAPSHLLPKPILAE
LDYPQTLKPNDINVNHDIEKVYNNFILHNICQSGDDQNYGSSATCDVACL
QALSKRIHYGKFIAEAKCQENELLYKQLASARDRDAIWHQLSNEQVERVL
LKRVENKARSYGSDISVHGPRDVFKVDPATISDMYKKFIIPLTKLVEVEY
IIQRYEGINYEEHAHHQKDAFVANRMQWTT*

mRNA from alignment at NODE_162_length_42220_cov_4.454604:10055..11197+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud8549.t1 ID=Gcaud8549.t1|Name=Gcaud8549.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1143bp|location=Sequence derived from alignment at NODE_162_length_42220_cov_4.454604:10055..11197+ (Gracilaria caudata M_176_S67 male)
ATGCGcgccgcgccgccgcccgcaccgtcgccgtcgacatcgccgtcacc
tgtctcgcacccacgcgtcgccgcgctgcgccAGTTGCGTGTGCTTGCTG
CTGAGCCGCACGTTGAGGGCGAGCTTGACGTTGATATGAACGCCACTGCG
TTTCAGCCGCCTGTCGCGCTGTGCGCGACCTCCCGGGGGTTGTCGTCCTC
GCTGCGTGCTTCGCCGCGTCGGCCGCAGTCGCGCCCGTGCGGACGCGCTG
CGCGCGTGGTGGCTTGTGAACAGGCTGTGCATCGACAGCAACCGGGTGTG
GATTTCTATGGCATTCCCAACCCGCCGCCGGGCGACGCGTTGTTGTTGTC
GGATCTGCGCGAGCGTCTTATCCGTCAGGAGGAGACCATTATCTTTGCGC
TTATTGAGCGTGCGCAGTTTCGAGTGAATGAGCCCATTTATACGCCGGGT
GCGTTTGAGGTGCCGTCGCCTTATGGAACGTTTGCGCACTTTGTGCTGTT
CCAGATCGAGCAGGTGTATGCTAGGGTGAGGAGATATACGTCGCCGGATG
AGCACCCGTTTGCGCCGTCGCATTTGTTGCCAAAGCCTATCCTCGCTGAA
CTTGATTATCCGCAAACTCTAAAACCGAATGATATCAATGTGAACCACGA
CATCGAGAAGGTATACAACAACTTCATTTTGCACAACATCTGTCAATCGG
GAGACGATCAGAACTACGGAAGTTCTGCCACCTGTGACGTTGCCTGTCTG
CAGGCGCTGTCCAAGAGAATTCACTACGGAAAGTTTATTGCGGAGGCAAA
GTGTCAAGAGAATGAGCTGCTGTACAAGCAGCTGGCGTCCGCGAGAGACC
GGGACGCCATCTGGCATCAACTGTCCAACGAACAAGTGGAGCGCGTGCTG
CTTAAGCGAGTCGAAAACAAGGCCAGAAGTTATGGCTCCGACATCAGCGT
GCATGGTCCTAGAGATGTGTTCAAGGTCGACCCAGCAACCATCTCAGACA
TGTACAAAAAGTTTATCATCCCGCTCACCAAGTTGGTCGAGGTCGAGTAC
ATCATCCAGAGATATGAGGGCATCAATTATGAGGAACATGCACATCACCA
AAAGGACGCCTTCGTCGCCAATAGAATGCAATGGACAACCTAA

Coding sequence (CDS) from alignment at NODE_162_length_42220_cov_4.454604:10055..11197+

>Gcaud8549.t1 ID=Gcaud8549.t1|Name=Gcaud8549.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1143bp|location=Sequence derived from alignment at NODE_162_length_42220_cov_4.454604:10055..11197+ (Gracilaria caudata M_176_S67 male)
ATGCGcgccgcgccgccgcccgcaccgtcgccgtcgacatcgccgtcacc
tgtctcgcacccacgcgtcgccgcgctgcgccAGTTGCGTGTGCTTGCTG
CTGAGCCGCACGTTGAGGGCGAGCTTGACGTTGATATGAACGCCACTGCG
TTTCAGCCGCCTGTCGCGCTGTGCGCGACCTCCCGGGGGTTGTCGTCCTC
GCTGCGTGCTTCGCCGCGTCGGCCGCAGTCGCGCCCGTGCGGACGCGCTG
CGCGCGTGGTGGCTTGTGAACAGGCTGTGCATCGACAGCAACCGGGTGTG
GATTTCTATGGCATTCCCAACCCGCCGCCGGGCGACGCGTTGTTGTTGTC
GGATCTGCGCGAGCGTCTTATCCGTCAGGAGGAGACCATTATCTTTGCGC
TTATTGAGCGTGCGCAGTTTCGAGTGAATGAGCCCATTTATACGCCGGGT
GCGTTTGAGGTGCCGTCGCCTTATGGAACGTTTGCGCACTTTGTGCTGTT
CCAGATCGAGCAGGTGTATGCTAGGGTGAGGAGATATACGTCGCCGGATG
AGCACCCGTTTGCGCCGTCGCATTTGTTGCCAAAGCCTATCCTCGCTGAA
CTTGATTATCCGCAAACTCTAAAACCGAATGATATCAATGTGAACCACGA
CATCGAGAAGGTATACAACAACTTCATTTTGCACAACATCTGTCAATCGG
GAGACGATCAGAACTACGGAAGTTCTGCCACCTGTGACGTTGCCTGTCTG
CAGGCGCTGTCCAAGAGAATTCACTACGGAAAGTTTATTGCGGAGGCAAA
GTGTCAAGAGAATGAGCTGCTGTACAAGCAGCTGGCGTCCGCGAGAGACC
GGGACGCCATCTGGCATCAACTGTCCAACGAACAAGTGGAGCGCGTGCTG
CTTAAGCGAGTCGAAAACAAGGCCAGAAGTTATGGCTCCGACATCAGCGT
GCATGGTCCTAGAGATGTGTTCAAGGTCGACCCAGCAACCATCTCAGACA
TGTACAAAAAGTTTATCATCCCGCTCACCAAGTTGGTCGAGGTCGAGTAC
ATCATCCAGAGATATGAGGGCATCAATTATGAGGAACATGCACATCACCA
AAAGGACGCCTTCGTCGCCAATAGAATGCAATGGACAACCTAA