Gcaud8547.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud8547.t1
Unique Name	Gcaud8547.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	335

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_162_length_42220_cov_4.454604	contig	NODE_162_length_42220_cov_4.454604:5385..6443 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	130081.XP_005706983.1
PFAMs	RETICULATA-like
Max annot lvl	2759\|Eukaryota
GOs	GO:0000302,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0006950,GO:0006979,GO:0007275,GO:0008150,GO:0009314,GO:0009416,GO:0009507,GO:0009526,GO:0009528,GO:0009536,GO:0009628,GO:0009648,GO:0009706,GO:0009941,GO:0016020,GO:0019866,GO:0031090,GO:0031967,GO:0031969,GO:0031975,GO:0032501,GO:0032502,GO:0042170,GO:0042221,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044422,GO:0044424,GO:0044434,GO:0044435,GO:0044444,GO:0044446,GO:0044464,GO:0048366,GO:0048367,GO:0048731,GO:0048827,GO:0048856,GO:0050896,GO:0099402,GO:1901700
Evalue	9.38e-76
EggNOG OGs	2CM9Q@1\|root,2QPQK@2759\|Eukaryota
Description	Protein RETICULATA-related
COG category	S

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud8547	Gcaud8547	Gracilaria caudata M_176_S67 male	gene	NODE_162_length_42220_cov_4.454604 5385..6443 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud8547.t1	Gcaud8547.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_162_length_42220_cov_4.454604 5385..6443 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud8547.t1.stop1	Gcaud8547.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_162_length_42220_cov_4.454604 5385..5387 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud8547.t1.CDS1	Gcaud8547.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_162_length_42220_cov_4.454604 5385..6235 -
Gcaud8547.t1.CDS2	Gcaud8547.t1.CDS2	Gracilaria caudata M_176_S67 male	CDS	NODE_162_length_42220_cov_4.454604 6290..6443 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud8547.t1.exon1	Gcaud8547.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_162_length_42220_cov_4.454604 5385..6235 -
Gcaud8547.t1.exon2	Gcaud8547.t1.exon2	Gracilaria caudata M_176_S67 male	exon	NODE_162_length_42220_cov_4.454604 6290..6443 -

The following intron feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud8547.t1.intron1	Gcaud8547.t1.intron1	Gracilaria caudata M_176_S67 male	intron	NODE_162_length_42220_cov_4.454604 6236..6289 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud8547.t1.start1	Gcaud8547.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_162_length_42220_cov_4.454604 6441..6443 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_162_length_42220_cov_4.454604:5385..6443-
coding sequence from alignment at NODE_162_length_42220_cov_4.454604:5385..6443-

mRNA sequence

>Gcaud8547.t1 ID=Gcaud8547.t1|Name=Gcaud8547.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=335bp
LTSSSNFGSPSGIPGNQGFDQRIDDSPRNSKSEPLVSLTDAETGGGKDGY
GGEYESYDGYDLPEDLKQALAFGSLSQEALKRYLNALKNPMLRLFMAIPA
YRTRALADSAFFFKLMVQELIGNGTALASEIAVRGKDIVHELEYVASDLI
VGTVVEAAFVWLLAPTLSLPTASGSSVSRFLSSLPSNMFQASNAIQQFTL
AQRAASFVYAGLQYTIIGFVAGIVGTAITYGLIEGRKRFDKTYEPERPLP
AVIPNSAAWGVFMGVSSNTRFQIVEGLELGIARLFAGRAEPVVNGSIIAL
RFANNYWGGVQFVQFFRYLGLHATGEETDQHKQE*

spliced messenger RNA

>Gcaud8547.t1 ID=Gcaud8547.t1|Name=Gcaud8547.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1005bp|location=Sequence derived from alignment at NODE_162_length_42220_cov_4.454604:5385..6443- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
TTGACTTCATCGTCAAATTTTGGTTCCCCAAGTGGAATCCCAGGAAATCA
GGGTTTTGACCAAAGAATCGATGATTCGCCGAGAAATTCAAAATCAGAAC
CCTTAGTGAGCCTAACAGATGCCGAAACTGGTGGGGGTAAGGACGGATAT
GGAGGTGAATATGAAAGCTATGACGGCTATGATCTACCTGAGGATCTTAA
ACAGGCCTTAGCATTCGGTTCGCTTTCTCAAGAGGCCCTGAAACGATATC
TCAATGCATTGAAGAACCCCATGCTCAGGCTTTTTATGGCGATCCCTGCG
TATCGAACACGAGCACTGGCTGATTCGGCTTTCTTCTTCAAGTTGATGGT
TCAAGAGCTGATTGGGAACGGCACAGCCCTTGCCTCTGAAATAGCCGTCC
GTGGCAAGGATATTGTGCATGAGCTCGAATACGTAGCCTCTGATCTCATT
GTTGGAACAGTAGTGGAAGCAGCGTTTGTGTGGCTTCTTGCCCCTACGCT
GTCATTACCAACGGCATCTGGATCTTCTGTATCCCGTTTTCTTTCATCTT
TGCCATCGAACATGTTTCAGGCTTCGAATGCGATCCAACAATTCACATTA
GCTCAACGTGCCGCATCTTTTGTTTATGCCGGACTTCAGTATACCATTAT
TGGTTTTGTAGCGGGCATTGTTGGTACTGCGATAACATACGGGCTCATAG
AAGGAAGGAAACGCTTCGACAAGACCTATGAACCGGAGAGGCCCCTACCT
GCTGTCATTCCAAACTCTGCAGCCTGGGGAGTGTTTATGGGTGTTTCAAG
CAACACCCGCTTTCAGATCGTAGAAGGCCTTGAGCTCGGCATTGCTAGGC
TGTTTGCTGGGAGGGCAGAACCTGTTGTGAACGGTTCTATTATTGCACTG
CGATTTGCAAACAACTACTGGGGTGGTGTTCAATTCGTGCAGTTCTTTAG
ATATCTCGGGTTACACGCCACAGGCGAAGAAACAGACCAACACAAGCAGG
AGTGA

protein sequence of Gcaud8547.t1

>Gcaud8547.t1 ID=Gcaud8547.t1|Name=Gcaud8547.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=335bp
LTSSSNFGSPSGIPGNQGFDQRIDDSPRNSKSEPLVSLTDAETGGGKDGY
GGEYESYDGYDLPEDLKQALAFGSLSQEALKRYLNALKNPMLRLFMAIPA
YRTRALADSAFFFKLMVQELIGNGTALASEIAVRGKDIVHELEYVASDLI
VGTVVEAAFVWLLAPTLSLPTASGSSVSRFLSSLPSNMFQASNAIQQFTL
AQRAASFVYAGLQYTIIGFVAGIVGTAITYGLIEGRKRFDKTYEPERPLP
AVIPNSAAWGVFMGVSSNTRFQIVEGLELGIARLFAGRAEPVVNGSIIAL
RFANNYWGGVQFVQFFRYLGLHATGEETDQHKQE*

mRNA from alignment at NODE_162_length_42220_cov_4.454604:5385..6443-

Legend: polypeptideCDSexonstart_codonintronstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud8547.t1 ID=Gcaud8547.t1|Name=Gcaud8547.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1059bp|location=Sequence derived from alignment at NODE_162_length_42220_cov_4.454604:5385..6443- (Gracilaria caudata M_176_S67 male)
TTGACTTCATCGTCAAATTTTGGTTCCCCAAGTGGAATCCCAGGAAATCA
GGGTTTTGACCAAAGAATCGATGATTCGCCGAGAAATTCAAAATCAGAAC
CCTTAGTGAGCCTAACAGATGCCGAAACTGGTGGGGGTAAGGACGGATAT
GGAGGTATCGGAGGTGGAGGAAGCGGTGGTGGAAGTGGTGGTGGTGGATC
TGGCGGAGGTGAATATGAAAGCTATGACGGCTATGATCTACCTGAGGATC
TTAAACAGGCCTTAGCATTCGGTTCGCTTTCTCAAGAGGCCCTGAAACGA
TATCTCAATGCATTGAAGAACCCCATGCTCAGGCTTTTTATGGCGATCCC
TGCGTATCGAACACGAGCACTGGCTGATTCGGCTTTCTTCTTCAAGTTGA
TGGTTCAAGAGCTGATTGGGAACGGCACAGCCCTTGCCTCTGAAATAGCC
GTCCGTGGCAAGGATATTGTGCATGAGCTCGAATACGTAGCCTCTGATCT
CATTGTTGGAACAGTAGTGGAAGCAGCGTTTGTGTGGCTTCTTGCCCCTA
CGCTGTCATTACCAACGGCATCTGGATCTTCTGTATCCCGTTTTCTTTCA
TCTTTGCCATCGAACATGTTTCAGGCTTCGAATGCGATCCAACAATTCAC
ATTAGCTCAACGTGCCGCATCTTTTGTTTATGCCGGACTTCAGTATACCA
TTATTGGTTTTGTAGCGGGCATTGTTGGTACTGCGATAACATACGGGCTC
ATAGAAGGAAGGAAACGCTTCGACAAGACCTATGAACCGGAGAGGCCCCT
ACCTGCTGTCATTCCAAACTCTGCAGCCTGGGGAGTGTTTATGGGTGTTT
CAAGCAACACCCGCTTTCAGATCGTAGAAGGCCTTGAGCTCGGCATTGCT
AGGCTGTTTGCTGGGAGGGCAGAACCTGTTGTGAACGGTTCTATTATTGC
ACTGCGATTTGCAAACAACTACTGGGGTGGTGTTCAATTCGTGCAGTTCT
TTAGATATCTCGGGTTACACGCCACAGGCGAAGAAACAGACCAACACAAG
CAGGAGTGA

Coding sequence (CDS) from alignment at NODE_162_length_42220_cov_4.454604:5385..6443-

>Gcaud8547.t1 ID=Gcaud8547.t1|Name=Gcaud8547.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1005bp|location=Sequence derived from alignment at NODE_162_length_42220_cov_4.454604:5385..6443- (Gracilaria caudata M_176_S67 male)
TTGACTTCATCGTCAAATTTTGGTTCCCCAAGTGGAATCCCAGGAAATCA
GGGTTTTGACCAAAGAATCGATGATTCGCCGAGAAATTCAAAATCAGAAC
CCTTAGTGAGCCTAACAGATGCCGAAACTGGTGGGGGTAAGGACGGATAT
GGAGGTGAATATGAAAGCTATGACGGCTATGATCTACCTGAGGATCTTAA
ACAGGCCTTAGCATTCGGTTCGCTTTCTCAAGAGGCCCTGAAACGATATC
TCAATGCATTGAAGAACCCCATGCTCAGGCTTTTTATGGCGATCCCTGCG
TATCGAACACGAGCACTGGCTGATTCGGCTTTCTTCTTCAAGTTGATGGT
TCAAGAGCTGATTGGGAACGGCACAGCCCTTGCCTCTGAAATAGCCGTCC
GTGGCAAGGATATTGTGCATGAGCTCGAATACGTAGCCTCTGATCTCATT
GTTGGAACAGTAGTGGAAGCAGCGTTTGTGTGGCTTCTTGCCCCTACGCT
GTCATTACCAACGGCATCTGGATCTTCTGTATCCCGTTTTCTTTCATCTT
TGCCATCGAACATGTTTCAGGCTTCGAATGCGATCCAACAATTCACATTA
GCTCAACGTGCCGCATCTTTTGTTTATGCCGGACTTCAGTATACCATTAT
TGGTTTTGTAGCGGGCATTGTTGGTACTGCGATAACATACGGGCTCATAG
AAGGAAGGAAACGCTTCGACAAGACCTATGAACCGGAGAGGCCCCTACCT
GCTGTCATTCCAAACTCTGCAGCCTGGGGAGTGTTTATGGGTGTTTCAAG
CAACACCCGCTTTCAGATCGTAGAAGGCCTTGAGCTCGGCATTGCTAGGC
TGTTTGCTGGGAGGGCAGAACCTGTTGTGAACGGTTCTATTATTGCACTG
CGATTTGCAAACAACTACTGGGGTGGTGTTCAATTCGTGCAGTTCTTTAG
ATATCTCGGGTTACACGCCACAGGCGAAGAAACAGACCAACACAAGCAGG
AGTGA