Gcaud8546.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud8546.t1
Unique Name	Gcaud8546.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	350

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_162_length_42220_cov_4.454604	contig	NODE_162_length_42220_cov_4.454604:4120..5169 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	45157.CMH114CT
PFAMs	FKBP_C
Max annot lvl	2759\|Eukaryota
Evalue	2.42e-48
EggNOG OGs	COG0545@1\|root,KOG0543@2759\|Eukaryota
Description	FK506 binding
COG category	O

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud8546	Gcaud8546	Gracilaria caudata M_176_S67 male	gene	NODE_162_length_42220_cov_4.454604 4120..5169 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud8546.t1.start1	Gcaud8546.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_162_length_42220_cov_4.454604 4120..4122 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud8546.t1.CDS1	Gcaud8546.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_162_length_42220_cov_4.454604 4120..5169 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud8546.t1.exon1	Gcaud8546.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_162_length_42220_cov_4.454604 4120..5169 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud8546.t1.stop1	Gcaud8546.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_162_length_42220_cov_4.454604 5167..5169 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud8546.t1	Gcaud8546.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_162_length_42220_cov_4.454604 4120..5169 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_162_length_42220_cov_4.454604:4120..5169+
coding sequence from alignment at NODE_162_length_42220_cov_4.454604:4120..5169+

mRNA sequence

>Gcaud8546.t1 ID=Gcaud8546.t1|Name=Gcaud8546.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=350bp
MAAGPSAPSKQRKSLSSNKSTTSPEGERQPPESSSSSAASTTSGKTVTRA
LGTRREPKKPMSITKKTREDFIAEGIVDDVDDGVPTQFEPADIRFGIDDV
KDPFKKEQAQLAKEGAQEEAEKMRKTFGKALDVTGDGGVTKLVIRQGEGE
VPENGAKIRVQYQGKLEDGSVFDDSSSRGAFEFVLGSGTVIKGWEAGVAT
MRKGETAEFTIQPSYAYGRKGMPPVIPSNAVLTFEIELVSFSGGEQEAIK
KVADFNPDVARTPEDIAKEYEEKLEKQAERKKNMSLLDRFYIISPFASQS
GEKPPWWINPNITFFIIAVMVGVGFYLVLISGAIHVGYVDQPIDVNIFK*

spliced messenger RNA

>Gcaud8546.t1 ID=Gcaud8546.t1|Name=Gcaud8546.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1050bp|location=Sequence derived from alignment at NODE_162_length_42220_cov_4.454604:4120..5169+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCTGCCGGTCCAAGCGCCCCGTCGAAGCAGCGCAAATCATTGAGCTC
AAACAAATCGACGACATCGCCAGAGGGTGAGAGACAGCCGCCTGAATCAT
CGTCCAGTTCTGCGGCTTCCACGACCTCTGGGAAGACAGTCACTCGTGCG
CTTGGAACACGGCGAGAACCAAAGAAACCTATGTCTATTACAAAGAAGAC
GAGGGAAGACTTCATTGCGGAGGGTATCGTCGATGACGTCGACGACGGCG
TTCCTACTCAGTTTGAGCCGGCAGACATTCGATTCGGTATAGATGACGTC
AAAGACCCGTTCAAAAAAGAGCAGGCACAACTTGCGAAGGAGGGTGCTCA
GGAGGAGGCCGAAAAGATGCGGAAAACGTTTGGCAAAGCGTTGGACGTCA
CTGGTGATGGTGGAGTAACTAAACTTGTAATTCGACAAGGAGAAGGCGAA
GTACCAGAGAATGGTGCAAAGATCAGAGTACAATACCAAGGCAAGCTCGA
GGACGGCTCCGTTTTTGACGACAGCTCTTCCCGTGGGGCCTTCGAGTTTG
TGCTTGGGAGCGGTACCGTCATCAAAGGTTGGGAAGCTGGAGTTGCTACC
ATGCGAAAAGGAGAAACAGCTGAGTTCACCATTCAACCAAGTTATGCCTA
TGGTCGCAAAGGCATGCCCCCAGTGATTCCAAGCAATGCCGTACTGACTT
TTGAGATTGAGTTAGTGTCTTTCTCGGGAGGGGAACAGGAAGCAATCAAG
AAAGTGGCAGACTTTAACCCTGATGTTGCTAGAACGCCGGAGGATATTGC
AAAGGAGTACGAAGAAAAGTTAGAAAAACAAGCAGAGCGAAAGAAGAATA
TGTCACTCCTTGATCGCTTCTACATTATCAGTCCGTTTGCAAGTCAGAGT
GGAGAGAAGCCACCGTGGTGGATCAATCCGAATATTACGTTCTTCATCAT
TGCGGTAATGGTGGGGGTTGGCTTTTACCTCGTATTGATTTCAGGGGCAA
TTCATGTCGGATATGTTGACCAACCAATAGATGTCAATATTTTCAAGTAG

protein sequence of Gcaud8546.t1

>Gcaud8546.t1 ID=Gcaud8546.t1|Name=Gcaud8546.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=350bp
MAAGPSAPSKQRKSLSSNKSTTSPEGERQPPESSSSSAASTTSGKTVTRA
LGTRREPKKPMSITKKTREDFIAEGIVDDVDDGVPTQFEPADIRFGIDDV
KDPFKKEQAQLAKEGAQEEAEKMRKTFGKALDVTGDGGVTKLVIRQGEGE
VPENGAKIRVQYQGKLEDGSVFDDSSSRGAFEFVLGSGTVIKGWEAGVAT
MRKGETAEFTIQPSYAYGRKGMPPVIPSNAVLTFEIELVSFSGGEQEAIK
KVADFNPDVARTPEDIAKEYEEKLEKQAERKKNMSLLDRFYIISPFASQS
GEKPPWWINPNITFFIIAVMVGVGFYLVLISGAIHVGYVDQPIDVNIFK*

mRNA from alignment at NODE_162_length_42220_cov_4.454604:4120..5169+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud8546.t1 ID=Gcaud8546.t1|Name=Gcaud8546.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1050bp|location=Sequence derived from alignment at NODE_162_length_42220_cov_4.454604:4120..5169+ (Gracilaria caudata M_176_S67 male)
ATGGCTGCCGGTCCAAGCGCCCCGTCGAAGCAGCGCAAATCATTGAGCTC
AAACAAATCGACGACATCGCCAGAGGGTGAGAGACAGCCGCCTGAATCAT
CGTCCAGTTCTGCGGCTTCCACGACCTCTGGGAAGACAGTCACTCGTGCG
CTTGGAACACGGCGAGAACCAAAGAAACCTATGTCTATTACAAAGAAGAC
GAGGGAAGACTTCATTGCGGAGGGTATCGTCGATGACGTCGACGACGGCG
TTCCTACTCAGTTTGAGCCGGCAGACATTCGATTCGGTATAGATGACGTC
AAAGACCCGTTCAAAAAAGAGCAGGCACAACTTGCGAAGGAGGGTGCTCA
GGAGGAGGCCGAAAAGATGCGGAAAACGTTTGGCAAAGCGTTGGACGTCA
CTGGTGATGGTGGAGTAACTAAACTTGTAATTCGACAAGGAGAAGGCGAA
GTACCAGAGAATGGTGCAAAGATCAGAGTACAATACCAAGGCAAGCTCGA
GGACGGCTCCGTTTTTGACGACAGCTCTTCCCGTGGGGCCTTCGAGTTTG
TGCTTGGGAGCGGTACCGTCATCAAAGGTTGGGAAGCTGGAGTTGCTACC
ATGCGAAAAGGAGAAACAGCTGAGTTCACCATTCAACCAAGTTATGCCTA
TGGTCGCAAAGGCATGCCCCCAGTGATTCCAAGCAATGCCGTACTGACTT
TTGAGATTGAGTTAGTGTCTTTCTCGGGAGGGGAACAGGAAGCAATCAAG
AAAGTGGCAGACTTTAACCCTGATGTTGCTAGAACGCCGGAGGATATTGC
AAAGGAGTACGAAGAAAAGTTAGAAAAACAAGCAGAGCGAAAGAAGAATA
TGTCACTCCTTGATCGCTTCTACATTATCAGTCCGTTTGCAAGTCAGAGT
GGAGAGAAGCCACCGTGGTGGATCAATCCGAATATTACGTTCTTCATCAT
TGCGGTAATGGTGGGGGTTGGCTTTTACCTCGTATTGATTTCAGGGGCAA
TTCATGTCGGATATGTTGACCAACCAATAGATGTCAATATTTTCAAGTAG

Coding sequence (CDS) from alignment at NODE_162_length_42220_cov_4.454604:4120..5169+

>Gcaud8546.t1 ID=Gcaud8546.t1|Name=Gcaud8546.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1050bp|location=Sequence derived from alignment at NODE_162_length_42220_cov_4.454604:4120..5169+ (Gracilaria caudata M_176_S67 male)
ATGGCTGCCGGTCCAAGCGCCCCGTCGAAGCAGCGCAAATCATTGAGCTC
AAACAAATCGACGACATCGCCAGAGGGTGAGAGACAGCCGCCTGAATCAT
CGTCCAGTTCTGCGGCTTCCACGACCTCTGGGAAGACAGTCACTCGTGCG
CTTGGAACACGGCGAGAACCAAAGAAACCTATGTCTATTACAAAGAAGAC
GAGGGAAGACTTCATTGCGGAGGGTATCGTCGATGACGTCGACGACGGCG
TTCCTACTCAGTTTGAGCCGGCAGACATTCGATTCGGTATAGATGACGTC
AAAGACCCGTTCAAAAAAGAGCAGGCACAACTTGCGAAGGAGGGTGCTCA
GGAGGAGGCCGAAAAGATGCGGAAAACGTTTGGCAAAGCGTTGGACGTCA
CTGGTGATGGTGGAGTAACTAAACTTGTAATTCGACAAGGAGAAGGCGAA
GTACCAGAGAATGGTGCAAAGATCAGAGTACAATACCAAGGCAAGCTCGA
GGACGGCTCCGTTTTTGACGACAGCTCTTCCCGTGGGGCCTTCGAGTTTG
TGCTTGGGAGCGGTACCGTCATCAAAGGTTGGGAAGCTGGAGTTGCTACC
ATGCGAAAAGGAGAAACAGCTGAGTTCACCATTCAACCAAGTTATGCCTA
TGGTCGCAAAGGCATGCCCCCAGTGATTCCAAGCAATGCCGTACTGACTT
TTGAGATTGAGTTAGTGTCTTTCTCGGGAGGGGAACAGGAAGCAATCAAG
AAAGTGGCAGACTTTAACCCTGATGTTGCTAGAACGCCGGAGGATATTGC
AAAGGAGTACGAAGAAAAGTTAGAAAAACAAGCAGAGCGAAAGAAGAATA
TGTCACTCCTTGATCGCTTCTACATTATCAGTCCGTTTGCAAGTCAGAGT
GGAGAGAAGCCACCGTGGTGGATCAATCCGAATATTACGTTCTTCATCAT
TGCGGTAATGGTGGGGGTTGGCTTTTACCTCGTATTGATTTCAGGGGCAA
TTCATGTCGGATATGTTGACCAACCAATAGATGTCAATATTTTCAAGTAG