Gcaud8545.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGcaud8545.t1
Unique NameGcaud8545.t1
TypemRNA
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length383
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_162_length_42220_cov_4.454604contigNODE_162_length_42220_cov_4.454604:2256..3404 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog2880.D7FQY6
PFAMsAbhydrolase_1,Abhydrolase_6,Hydrolase_4
Max annot lvl2759|Eukaryota
GOsGO:0003674,GO:0003824,GO:0016787
Evalue2.74e-67
EggNOG OGsCOG0596@1|root,KOG1454@2759|Eukaryota
Descriptionregulation of endocannabinoid signaling pathway
COG categoryO
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud8545Gcaud8545Gracilaria caudata M_176_S67 malegeneNODE_162_length_42220_cov_4.454604 2256..3404 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud8545.t1.stop1Gcaud8545.t1.stop1Gracilaria caudata M_176_S67 malestop_codonNODE_162_length_42220_cov_4.454604 2256..2258 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud8545.t1.CDS1Gcaud8545.t1.CDS1Gracilaria caudata M_176_S67 maleCDSNODE_162_length_42220_cov_4.454604 2256..3404 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud8545.t1.exon1Gcaud8545.t1.exon1Gracilaria caudata M_176_S67 maleexonNODE_162_length_42220_cov_4.454604 2256..3404 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud8545.t1.start1Gcaud8545.t1.start1Gracilaria caudata M_176_S67 malestart_codonNODE_162_length_42220_cov_4.454604 3402..3404 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud8545.t1Gcaud8545.t1Gracilaria caudata M_176_S67 malepolypeptideNODE_162_length_42220_cov_4.454604 2256..3404 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gcaud8545.t1 ID=Gcaud8545.t1|Name=Gcaud8545.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=383bp
MAFTTLAFTGTLLVPSTGSTHCGFMATSPLPVTRASKSHGAFSVRSALNE
RRDGSHVGTQTKPHSETASYAPCVPADAAAEIEDPSAQQMLQRIQYTPVE
TALPKQTIYTSHVHVSSSSPSTASPKLVFLHGFDSNMLEYRFILPLLERA
DVQAHFVDVLGWGLTECPTLSEFSFGPNAKREHLRAFVDQVVGGGPLILI
GASIGGAIAIDFALNYPELVQGMVLLSPQAFVDKPPSPLMSIGSLAGMGA
EVLRSRWLRRLAGQMSYENPELRKSEEVLKIGGLHCHRPGWKEAAVDFIK
GEGYCVSSRVREVSCPTLVMWGEQDRVLPKKNAQRFVEEMANCRLQYVQN
CGHCPHIEKPSLVTDNILQFARGERSTIEHRK*
back to top

spliced messenger RNA

>Gcaud8545.t1 ID=Gcaud8545.t1|Name=Gcaud8545.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1149bp|location=Sequence derived from alignment at NODE_162_length_42220_cov_4.454604:2256..3404- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCTTTTACTACGTTGGCATTTACCGGAACGCTATTAGTGCCAAGTAC
TGGGTCCACCCACTGCGGGTTTATGGCTACTAGTCCCCTCCCCGTCACAC
GAGCTTCGAAATCGCACGGCGCTTTCTCTGTTCGTTCAGCTTTGAACGAG
AGAAGGGATGGTTCTCATGTAGGGACACAGACAAAACCCCATTCGGAAAC
AGCGAGTTACGCGCCATGCGTCCCGGCTGACGCTGCGGCCGAGATAGAGG
ATCCCAGCGCTCAGCAAATGCTCCAGCGCATTCAATACACGCCGGTTGAG
ACCGCTTTACCCAAACAGACCATCTACACCTCTCATGTTCACGTATCTAG
TAGCTCACCATCTACTGCGTCGCCGAAGCTTGTGTTCTTGCACGGCTTCG
ATTCTAACATGCTGGAGTATCGCTTCATACTACCGTTACTGGAGCGGGCA
GATGTGCAAGCTCATTTTGTTGACGTGTTGGGCTGGGGTTTGACCGAGTG
TCCCACGCTGTCGGAATTCAGCTTCGGCCCAAACGCCAAACGGGAGCACC
TGCGCGCATTCGTCGACCAAGTGGTGGGAGGAGGACCTCTAATTCTGATC
GGAGCATCTATAGGTGGCGCCATCGCCATCGACTTTGCGCTCAATTATCC
GGAGCTTGTGCAAGGGATGGTGCTGTTGTCACCGCAGGCATTTGTGGACA
AACCACCCTCCCCTCTGATGAGTATCGGCAGTCTGGCCGGTATGGGCGCG
GAAGTGTTGCGGTCTAGATGGCTGCGACGGTTGGCGGGACAAATGTCGTA
CGAAAACCCAGAGCTGCGCAAAAGCGAGGAGGTGTTGAAAATTGGTGGTT
TACATTGTCACAGGCCAGGGTGGAAGGAGGCGGCCGTCGACTTCATTAAA
GGCGAGGGGTACTGCGTGAGCAGCCGCGTGCGAGAAGTTAGCTGTCCAAC
GTTGGTGATGTGGGGTGAGCAGGATCGAGTGTTACCGAAGAAAAATGCGC
AGCGATTTGTGGAGGAGATGGCCAACTGTCGCTTGCAGTACGTGCAAAAC
TGCGGACATTGCCCACATATCGAAAAACCTTCATTGGTGACAGATAACAT
TCTACAGTTTGCTCGCGGCGAGAGGAGCACAATTGAACATAGAAAGTAA
back to top

protein sequence of Gcaud8545.t1

>Gcaud8545.t1 ID=Gcaud8545.t1|Name=Gcaud8545.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=383bp
MAFTTLAFTGTLLVPSTGSTHCGFMATSPLPVTRASKSHGAFSVRSALNE
RRDGSHVGTQTKPHSETASYAPCVPADAAAEIEDPSAQQMLQRIQYTPVE
TALPKQTIYTSHVHVSSSSPSTASPKLVFLHGFDSNMLEYRFILPLLERA
DVQAHFVDVLGWGLTECPTLSEFSFGPNAKREHLRAFVDQVVGGGPLILI
GASIGGAIAIDFALNYPELVQGMVLLSPQAFVDKPPSPLMSIGSLAGMGA
EVLRSRWLRRLAGQMSYENPELRKSEEVLKIGGLHCHRPGWKEAAVDFIK
GEGYCVSSRVREVSCPTLVMWGEQDRVLPKKNAQRFVEEMANCRLQYVQN
CGHCPHIEKPSLVTDNILQFARGERSTIEHRK*
back to top

mRNA from alignment at NODE_162_length_42220_cov_4.454604:2256..3404-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gcaud8545.t1 ID=Gcaud8545.t1|Name=Gcaud8545.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1149bp|location=Sequence derived from alignment at NODE_162_length_42220_cov_4.454604:2256..3404- (Gracilaria caudata M_176_S67 male)
ATGGCTTTTACTACGTTGGCATTTACCGGAACGCTATTAGTGCCAAGTAC
TGGGTCCACCCACTGCGGGTTTATGGCTACTAGTCCCCTCCCCGTCACAC
GAGCTTCGAAATCGCACGGCGCTTTCTCTGTTCGTTCAGCTTTGAACGAG
AGAAGGGATGGTTCTCATGTAGGGACACAGACAAAACCCCATTCGGAAAC
AGCGAGTTACGCGCCATGCGTCCCGGCTGACGCTGCGGCCGAGATAGAGG
ATCCCAGCGCTCAGCAAATGCTCCAGCGCATTCAATACACGCCGGTTGAG
ACCGCTTTACCCAAACAGACCATCTACACCTCTCATGTTCACGTATCTAG
TAGCTCACCATCTACTGCGTCGCCGAAGCTTGTGTTCTTGCACGGCTTCG
ATTCTAACATGCTGGAGTATCGCTTCATACTACCGTTACTGGAGCGGGCA
GATGTGCAAGCTCATTTTGTTGACGTGTTGGGCTGGGGTTTGACCGAGTG
TCCCACGCTGTCGGAATTCAGCTTCGGCCCAAACGCCAAACGGGAGCACC
TGCGCGCATTCGTCGACCAAGTGGTGGGAGGAGGACCTCTAATTCTGATC
GGAGCATCTATAGGTGGCGCCATCGCCATCGACTTTGCGCTCAATTATCC
GGAGCTTGTGCAAGGGATGGTGCTGTTGTCACCGCAGGCATTTGTGGACA
AACCACCCTCCCCTCTGATGAGTATCGGCAGTCTGGCCGGTATGGGCGCG
GAAGTGTTGCGGTCTAGATGGCTGCGACGGTTGGCGGGACAAATGTCGTA
CGAAAACCCAGAGCTGCGCAAAAGCGAGGAGGTGTTGAAAATTGGTGGTT
TACATTGTCACAGGCCAGGGTGGAAGGAGGCGGCCGTCGACTTCATTAAA
GGCGAGGGGTACTGCGTGAGCAGCCGCGTGCGAGAAGTTAGCTGTCCAAC
GTTGGTGATGTGGGGTGAGCAGGATCGAGTGTTACCGAAGAAAAATGCGC
AGCGATTTGTGGAGGAGATGGCCAACTGTCGCTTGCAGTACGTGCAAAAC
TGCGGACATTGCCCACATATCGAAAAACCTTCATTGGTGACAGATAACAT
TCTACAGTTTGCTCGCGGCGAGAGGAGCACAATTGAACATAGAAAGTAA
back to top

Coding sequence (CDS) from alignment at NODE_162_length_42220_cov_4.454604:2256..3404-

>Gcaud8545.t1 ID=Gcaud8545.t1|Name=Gcaud8545.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1149bp|location=Sequence derived from alignment at NODE_162_length_42220_cov_4.454604:2256..3404- (Gracilaria caudata M_176_S67 male)
ATGGCTTTTACTACGTTGGCATTTACCGGAACGCTATTAGTGCCAAGTAC
TGGGTCCACCCACTGCGGGTTTATGGCTACTAGTCCCCTCCCCGTCACAC
GAGCTTCGAAATCGCACGGCGCTTTCTCTGTTCGTTCAGCTTTGAACGAG
AGAAGGGATGGTTCTCATGTAGGGACACAGACAAAACCCCATTCGGAAAC
AGCGAGTTACGCGCCATGCGTCCCGGCTGACGCTGCGGCCGAGATAGAGG
ATCCCAGCGCTCAGCAAATGCTCCAGCGCATTCAATACACGCCGGTTGAG
ACCGCTTTACCCAAACAGACCATCTACACCTCTCATGTTCACGTATCTAG
TAGCTCACCATCTACTGCGTCGCCGAAGCTTGTGTTCTTGCACGGCTTCG
ATTCTAACATGCTGGAGTATCGCTTCATACTACCGTTACTGGAGCGGGCA
GATGTGCAAGCTCATTTTGTTGACGTGTTGGGCTGGGGTTTGACCGAGTG
TCCCACGCTGTCGGAATTCAGCTTCGGCCCAAACGCCAAACGGGAGCACC
TGCGCGCATTCGTCGACCAAGTGGTGGGAGGAGGACCTCTAATTCTGATC
GGAGCATCTATAGGTGGCGCCATCGCCATCGACTTTGCGCTCAATTATCC
GGAGCTTGTGCAAGGGATGGTGCTGTTGTCACCGCAGGCATTTGTGGACA
AACCACCCTCCCCTCTGATGAGTATCGGCAGTCTGGCCGGTATGGGCGCG
GAAGTGTTGCGGTCTAGATGGCTGCGACGGTTGGCGGGACAAATGTCGTA
CGAAAACCCAGAGCTGCGCAAAAGCGAGGAGGTGTTGAAAATTGGTGGTT
TACATTGTCACAGGCCAGGGTGGAAGGAGGCGGCCGTCGACTTCATTAAA
GGCGAGGGGTACTGCGTGAGCAGCCGCGTGCGAGAAGTTAGCTGTCCAAC
GTTGGTGATGTGGGGTGAGCAGGATCGAGTGTTACCGAAGAAAAATGCGC
AGCGATTTGTGGAGGAGATGGCCAACTGTCGCTTGCAGTACGTGCAAAAC
TGCGGACATTGCCCACATATCGAAAAACCTTCATTGGTGACAGATAACAT
TCTACAGTTTGCTCGCGGCGAGAGGAGCACAATTGAACATAGAAAGTAA
back to top