Gcaud8540.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud8540.t1
Unique Name	Gcaud8540.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	362

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_1538_length_9864_cov_4.520004	contig	NODE_1538_length_9864_cov_4.520004:5462..6547 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	35754.JNYJ01000093_gene9263
PFAMs	Inhibitor_I9,P_proprotein,Peptidase_S8
Max annot lvl	201174\|Actinobacteria
Evalue	4.6e-43
EggNOG OGs	COG1404@1\|root,COG4935@1\|root,COG1404@2\|Bacteria,COG4935@2\|Bacteria,2GJYH@201174\|Actinobacteria,4DADU@85008\|Micromonosporales
Description	Belongs to the peptidase S8 family
COG category	O

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud8540	Gcaud8540	Gracilaria caudata M_176_S67 male	gene	NODE_1538_length_9864_cov_4.520004 5462..6547 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud8540.t1.start1	Gcaud8540.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_1538_length_9864_cov_4.520004 5462..5464 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud8540.t1.CDS1	Gcaud8540.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_1538_length_9864_cov_4.520004 5462..6547 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud8540.t1.exon1	Gcaud8540.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_1538_length_9864_cov_4.520004 5462..6547 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud8540.t1.stop1	Gcaud8540.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_1538_length_9864_cov_4.520004 6545..6547 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud8540.t1	Gcaud8540.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_1538_length_9864_cov_4.520004 5462..6547 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_1538_length_9864_cov_4.520004:5462..6547+
coding sequence from alignment at NODE_1538_length_9864_cov_4.520004:5462..6547+

mRNA sequence

>Gcaud8540.t1 ID=Gcaud8540.t1|Name=Gcaud8540.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=362bp
MIKAKCGTRALKLVRRSRRFIAVHQDQIIRLATPLRAQTKRSSNLESRQL
PPARQRSFEKISALSFNENRTEAIAWDGSLVDLSSQRIAQKCSASGGLGV
TVYVIDTGCRSSHEQLRGRVRTLVAPGSQYRSGEDDHGHGTHVAATIGGR
DFGIAPRVRLVCIKALSERNEGSAHDVVAGVQLAIRMHKGQRGPGIISIS
LGGRAVRRYTVLDAAVNTASKAGLSFVVAAGNAGTNACSFTPGRARRAIT
VAAVDGEGRIAGFSNSGACVSVGAPGVRVWSAVADEDDAYGVSSGTSMAA
PFVSGLVALLVGDRGKTRASTLRRWLKNMGRKGHDGISVVSAKTFCEWHQ
RSGQRRTAIGF*

spliced messenger RNA

>Gcaud8540.t1 ID=Gcaud8540.t1|Name=Gcaud8540.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1086bp|location=Sequence derived from alignment at NODE_1538_length_9864_cov_4.520004:5462..6547+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGATAAAGGCGAAGTGCGGAACCAGAGCTCTTAAACTCGTTCGACGAAG
CAGACGATTTATCGCTGTTCATCAAGACCAGATAATCCGACTGGCAACTC
CACTGCGGGCCCAAACCAAGAGATCTAGCAACCTTGAATCTAGGCAACTT
CCCCCAGCTCGACAACGGTCGTTCGAGAAGATCTCTGCATTATCGTTCAA
TGAAAACCGCACTGAGGCCATTGCATGGGATGGTAGTCTGGTTGATTTAA
GCTCTCAAAGAATAGCGCAGAAATGTTCTGCGAGCGGTGGTTTGGGAGTA
ACCGTATACGTGATCGATACGGGTTGTCGAAGCAGTCATGAGCAGTTACG
AGGTCGAGTAAGAACACTGGTGGCACCTGGCAGCCAATATCGTTCTGGGG
AAGACGATCATGGGCACGGGACTCACGTAGCCGCCACTATCGGAGGTCGA
GACTTTGGAATAGCGCCTCGTGTAAGACTGGTGTGTATAAAAGCTTTGTC
GGAACGGAACGAGGGAAGCGCACATGACGTGGTTGCCGGAGTGCAGTTGG
CGATAAGGATGCACAAAGGACAACGCGGACCGGGCATTATATCCATCTCA
TTAGGTGGCCGAGCTGTAAGAAGGTATACCGTTTTAGATGCAGCCGTGAA
CACGGCATCCAAGGCCGGTTTAAGCTTCGTTGTGGCAGCAGGAAATGCCG
GTACGAATGCATGCTCTTTCACGCCAGGAAGAGCGCGGAGAGCGATCACC
GTTGCTGCAGTGGACGGGGAGGGGAGAATAGCAGGGTTCTCAAACTCGGG
GGCATGTGTCAGCGTCGGTGCTCCAGGTGTGCGGGTGTGGAGCGCGGTTG
CCGATGAGGATGACGCCTACGGAGTGAGCTCGGGAACTTCGATGGCCGCT
CCGTTTGTGTCTGGGCTCGTCGCCCTTCTGGTGGGTGACCGAGGCAAAAC
GCGAGCGAGCACGCTAAGGAGGTGGCTGAAAAACATGGGTAGAAAAGGGC
ATGATGGTATTTCGGTCGTCTCGGCAAAGACTTTTTGCGAATGGCATCAG
CGATCAGGGCAAAGGCGAACGGCCATAGGATTCTGA

protein sequence of Gcaud8540.t1

>Gcaud8540.t1 ID=Gcaud8540.t1|Name=Gcaud8540.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=362bp
MIKAKCGTRALKLVRRSRRFIAVHQDQIIRLATPLRAQTKRSSNLESRQL
PPARQRSFEKISALSFNENRTEAIAWDGSLVDLSSQRIAQKCSASGGLGV
TVYVIDTGCRSSHEQLRGRVRTLVAPGSQYRSGEDDHGHGTHVAATIGGR
DFGIAPRVRLVCIKALSERNEGSAHDVVAGVQLAIRMHKGQRGPGIISIS
LGGRAVRRYTVLDAAVNTASKAGLSFVVAAGNAGTNACSFTPGRARRAIT
VAAVDGEGRIAGFSNSGACVSVGAPGVRVWSAVADEDDAYGVSSGTSMAA
PFVSGLVALLVGDRGKTRASTLRRWLKNMGRKGHDGISVVSAKTFCEWHQ
RSGQRRTAIGF*

mRNA from alignment at NODE_1538_length_9864_cov_4.520004:5462..6547+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud8540.t1 ID=Gcaud8540.t1|Name=Gcaud8540.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1086bp|location=Sequence derived from alignment at NODE_1538_length_9864_cov_4.520004:5462..6547+ (Gracilaria caudata M_176_S67 male)
ATGATAAAGGCGAAGTGCGGAACCAGAGCTCTTAAACTCGTTCGACGAAG
CAGACGATTTATCGCTGTTCATCAAGACCAGATAATCCGACTGGCAACTC
CACTGCGGGCCCAAACCAAGAGATCTAGCAACCTTGAATCTAGGCAACTT
CCCCCAGCTCGACAACGGTCGTTCGAGAAGATCTCTGCATTATCGTTCAA
TGAAAACCGCACTGAGGCCATTGCATGGGATGGTAGTCTGGTTGATTTAA
GCTCTCAAAGAATAGCGCAGAAATGTTCTGCGAGCGGTGGTTTGGGAGTA
ACCGTATACGTGATCGATACGGGTTGTCGAAGCAGTCATGAGCAGTTACG
AGGTCGAGTAAGAACACTGGTGGCACCTGGCAGCCAATATCGTTCTGGGG
AAGACGATCATGGGCACGGGACTCACGTAGCCGCCACTATCGGAGGTCGA
GACTTTGGAATAGCGCCTCGTGTAAGACTGGTGTGTATAAAAGCTTTGTC
GGAACGGAACGAGGGAAGCGCACATGACGTGGTTGCCGGAGTGCAGTTGG
CGATAAGGATGCACAAAGGACAACGCGGACCGGGCATTATATCCATCTCA
TTAGGTGGCCGAGCTGTAAGAAGGTATACCGTTTTAGATGCAGCCGTGAA
CACGGCATCCAAGGCCGGTTTAAGCTTCGTTGTGGCAGCAGGAAATGCCG
GTACGAATGCATGCTCTTTCACGCCAGGAAGAGCGCGGAGAGCGATCACC
GTTGCTGCAGTGGACGGGGAGGGGAGAATAGCAGGGTTCTCAAACTCGGG
GGCATGTGTCAGCGTCGGTGCTCCAGGTGTGCGGGTGTGGAGCGCGGTTG
CCGATGAGGATGACGCCTACGGAGTGAGCTCGGGAACTTCGATGGCCGCT
CCGTTTGTGTCTGGGCTCGTCGCCCTTCTGGTGGGTGACCGAGGCAAAAC
GCGAGCGAGCACGCTAAGGAGGTGGCTGAAAAACATGGGTAGAAAAGGGC
ATGATGGTATTTCGGTCGTCTCGGCAAAGACTTTTTGCGAATGGCATCAG
CGATCAGGGCAAAGGCGAACGGCCATAGGATTCTGA

Coding sequence (CDS) from alignment at NODE_1538_length_9864_cov_4.520004:5462..6547+

>Gcaud8540.t1 ID=Gcaud8540.t1|Name=Gcaud8540.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1086bp|location=Sequence derived from alignment at NODE_1538_length_9864_cov_4.520004:5462..6547+ (Gracilaria caudata M_176_S67 male)
ATGATAAAGGCGAAGTGCGGAACCAGAGCTCTTAAACTCGTTCGACGAAG
CAGACGATTTATCGCTGTTCATCAAGACCAGATAATCCGACTGGCAACTC
CACTGCGGGCCCAAACCAAGAGATCTAGCAACCTTGAATCTAGGCAACTT
CCCCCAGCTCGACAACGGTCGTTCGAGAAGATCTCTGCATTATCGTTCAA
TGAAAACCGCACTGAGGCCATTGCATGGGATGGTAGTCTGGTTGATTTAA
GCTCTCAAAGAATAGCGCAGAAATGTTCTGCGAGCGGTGGTTTGGGAGTA
ACCGTATACGTGATCGATACGGGTTGTCGAAGCAGTCATGAGCAGTTACG
AGGTCGAGTAAGAACACTGGTGGCACCTGGCAGCCAATATCGTTCTGGGG
AAGACGATCATGGGCACGGGACTCACGTAGCCGCCACTATCGGAGGTCGA
GACTTTGGAATAGCGCCTCGTGTAAGACTGGTGTGTATAAAAGCTTTGTC
GGAACGGAACGAGGGAAGCGCACATGACGTGGTTGCCGGAGTGCAGTTGG
CGATAAGGATGCACAAAGGACAACGCGGACCGGGCATTATATCCATCTCA
TTAGGTGGCCGAGCTGTAAGAAGGTATACCGTTTTAGATGCAGCCGTGAA
CACGGCATCCAAGGCCGGTTTAAGCTTCGTTGTGGCAGCAGGAAATGCCG
GTACGAATGCATGCTCTTTCACGCCAGGAAGAGCGCGGAGAGCGATCACC
GTTGCTGCAGTGGACGGGGAGGGGAGAATAGCAGGGTTCTCAAACTCGGG
GGCATGTGTCAGCGTCGGTGCTCCAGGTGTGCGGGTGTGGAGCGCGGTTG
CCGATGAGGATGACGCCTACGGAGTGAGCTCGGGAACTTCGATGGCCGCT
CCGTTTGTGTCTGGGCTCGTCGCCCTTCTGGTGGGTGACCGAGGCAAAAC
GCGAGCGAGCACGCTAAGGAGGTGGCTGAAAAACATGGGTAGAAAAGGGC
ATGATGGTATTTCGGTCGTCTCGGCAAAGACTTTTTGCGAATGGCATCAG
CGATCAGGGCAAAGGCGAACGGCCATAGGATTCTGA