Gcaud8534.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGcaud8534.t1
Unique NameGcaud8534.t1
TypemRNA
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length217
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_907_length_16250_cov_3.969800contigNODE_907_length_16250_cov_3.969800:14025..14922 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog1316927.ATKI01000035_gene4569
Preferred namepncA
PFAMsIsochorismatase
Max annot lvl1236|Gammaproteobacteria
KEGG rclassRC00100
KEGG koko:K08281
KEGG ReactionR01268
KEGG Pathwayko00760,ko01100,map00760,map01100
GOsGO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006139,GO:0006725,GO:0006732,GO:0006733,GO:0006753,GO:0006766,GO:0006767,GO:0006769,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0008936,GO:0009058,GO:0009108,GO:0009117,GO:0009165,GO:0009820,GO:0009987,GO:0016787,GO:0016810,GO:0016811,GO:0017144,GO:0018130,GO:0019362,GO:0019363,GO:0019365,GO:0019438,GO:0019637,GO:0034641,GO:0034654,GO:0043094,GO:0043173,GO:0043603,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044424,GO:0044464,GO:0046483,GO:0051186,GO:0051188,GO:0055086,GO:0071704,GO:0072524,GO:0072525,GO:0090407,GO:1901293,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576
Evalue6.97e-57
EggNOG OGsCOG1335@1|root,COG1335@2|Bacteria,1MUGW@1224|Proteobacteria,1RZBF@1236|Gammaproteobacteria,1YUR5@136843|Pseudomonas fluorescens group
EC3.5.1.19
DescriptionIsochorismatase family
COG categoryQ
BiGG ReactioniE2348C_1286.E2348C_1895,iECs_1301.ECs2475,iZ_1308.Z2802
BRITEko00000,ko00001,ko01000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud8534Gcaud8534Gracilaria caudata M_176_S67 malegeneNODE_907_length_16250_cov_3.969800 14025..14922 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud8534.t1Gcaud8534.t1Gracilaria caudata M_176_S67 malepolypeptideNODE_907_length_16250_cov_3.969800 14025..14922 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud8534.t1.start1Gcaud8534.t1.start1Gracilaria caudata M_176_S67 malestart_codonNODE_907_length_16250_cov_3.969800 14025..14027 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud8534.t1.CDS1Gcaud8534.t1.CDS1Gracilaria caudata M_176_S67 maleCDSNODE_907_length_16250_cov_3.969800 14025..14576 +
Gcaud8534.t1.CDS2Gcaud8534.t1.CDS2Gracilaria caudata M_176_S67 maleCDSNODE_907_length_16250_cov_3.969800 14824..14922 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud8534.t1.exon1Gcaud8534.t1.exon1Gracilaria caudata M_176_S67 maleexonNODE_907_length_16250_cov_3.969800 14025..14576 +
Gcaud8534.t1.exon2Gcaud8534.t1.exon2Gracilaria caudata M_176_S67 maleexonNODE_907_length_16250_cov_3.969800 14824..14922 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud8534.t1.intron1Gcaud8534.t1.intron1Gracilaria caudata M_176_S67 maleintronNODE_907_length_16250_cov_3.969800 14577..14823 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud8534.t1.stop1Gcaud8534.t1.stop1Gracilaria caudata M_176_S67 malestop_codonNODE_907_length_16250_cov_3.969800 14920..14922 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gcaud8534.t1 ID=Gcaud8534.t1|Name=Gcaud8534.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=217bp
MRSSDSALIIVDVQNDFLPTGSLAVPQGDDVIPVINHLVTTIHFTGGVYM
SKDWHPSTHTSFASNHPGKTHFDTVAIEIDGVQYDQTMWPDHCVQHSHGA
QFAHNLQIADNAVTILKGMDPRYDSYSAFYDNAKKTHTNLDSLLKNANVS
TVHICGLATDVCVLFTVMDAITLGYHTVIVSDACRGLSPESTDQAVSKMK
AAGAKVVTAAELEQQV*
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spliced messenger RNA

>Gcaud8534.t1 ID=Gcaud8534.t1|Name=Gcaud8534.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=651bp|location=Sequence derived from alignment at NODE_907_length_16250_cov_3.969800:14025..14922+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCGCTCTTCAGACAGCGCGCTCATCATTGTTGACGTTCAGAACGACTT
CCTTCCAACGGGCAGTCTTGCGGTGCCGCAAGGCGATGATGTCATCCCCG
TGATCAATCACCTCGTCACCACAATCCACTTCACCGGAGGTGTGTACATG
TCAAAGGACTGGCACCCTTCCACCCACACATCCTTCGCCAGCAATCACCC
CGGAAAGACACACTTCGACACTGTCGCAATCGAAATCGATGGCGTGCAGT
ACGACCAGACAATGTGGCCTGACCACTGCGTTCAGCACTCGCACGGAGCG
CAGTTTGCACACAATCTACAGATCGCTGATAACGCTGTCACCATCCTCAA
AGGTATGGACCCGCGCTACGACTCCTACTCTGCGTTCTATGACAATGCGA
AGAAGACACACACAAACCTTGACAGCTTGTTGAAGAACGCAAACGTAAGC
ACCGTACATATCTGCGGGCTGGCCACCGATGTATGCGTGCTTTTCACCGT
GATGGATGCCATCACGCTCGGCTATCACACCGTAATTGTTTCAGATGCAT
GTAGAGGTCTATCACCCGAATCAACGGACCAAGCTGTCTCCAAAATGAAG
GCTGCAGGCGCAAAGGTTGTCACAGCCGCAGAGCTAGAACAGCAAGTATG
A
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protein sequence of Gcaud8534.t1

>Gcaud8534.t1 ID=Gcaud8534.t1|Name=Gcaud8534.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=217bp
MRSSDSALIIVDVQNDFLPTGSLAVPQGDDVIPVINHLVTTIHFTGGVYM
SKDWHPSTHTSFASNHPGKTHFDTVAIEIDGVQYDQTMWPDHCVQHSHGA
QFAHNLQIADNAVTILKGMDPRYDSYSAFYDNAKKTHTNLDSLLKNANVS
TVHICGLATDVCVLFTVMDAITLGYHTVIVSDACRGLSPESTDQAVSKMK
AAGAKVVTAAELEQQV*
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mRNA from alignment at NODE_907_length_16250_cov_3.969800:14025..14922+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gcaud8534.t1 ID=Gcaud8534.t1|Name=Gcaud8534.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=898bp|location=Sequence derived from alignment at NODE_907_length_16250_cov_3.969800:14025..14922+ (Gracilaria caudata M_176_S67 male)
ATGCGCTCTTCAGACAGCGCGCTCATCATTGTTGACGTTCAGAACGACTT
CCTTCCAACGGGCAGTCTTGCGGTGCCGCAAGGCGATGATGTCATCCCCG
TGATCAATCACCTCGTCACCACAATCCACTTCACCGGAGGTGTGTACATG
TCAAAGGACTGGCACCCTTCCACCCACACATCCTTCGCCAGCAATCACCC
CGGAAAGACACACTTCGACACTGTCGCAATCGAAATCGATGGCGTGCAGT
ACGACCAGACAATGTGGCCTGACCACTGCGTTCAGCACTCGCACGGAGCG
CAGTTTGCACACAATCTACAGATCGCTGATAACGCTGTCACCATCCTCAA
AGGTATGGACCCGCGCTACGACTCCTACTCTGCGTTCTATGACAATGCGA
AGAAGACACACACAAACCTTGACAGCTTGTTGAAGAACGCAAACGTAAGC
ACCGTACATATCTGCGGGCTGGCCACCGATGTATGCGTGCTTTTCACCGT
GATGGATGCCATCACGCTCGGCTATCACACCGTAATTGTTTCAGATGCAT
GTGTAAGTTTCTATCATCCACCGTATTGCGCGTAAACATGCAGTCGAATA
GGCGCGCGCTTTGGGCGAGACGATACAGCTGTACGCTCGCAGAGACAGCT
CGCCAGGAGagtcgcaccggtcgcaccggtcgcaccagtcgcaccagtcg
caccagtcgcTGAGGCTTGTCCGGTTCCAATCAAATTTACCACCATCATA
AACACGAAATCTAACTAATGTGAGCGCCAATCCCAATCCGCAACACCAGA
GAGGTCTATCACCCGAATCAACGGACCAAGCTGTCTCCAAAATGAAGGCT
GCAGGCGCAAAGGTTGTCACAGCCGCAGAGCTAGAACAGCAAGTATGA
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Coding sequence (CDS) from alignment at NODE_907_length_16250_cov_3.969800:14025..14922+

>Gcaud8534.t1 ID=Gcaud8534.t1|Name=Gcaud8534.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=651bp|location=Sequence derived from alignment at NODE_907_length_16250_cov_3.969800:14025..14922+ (Gracilaria caudata M_176_S67 male)
ATGCGCTCTTCAGACAGCGCGCTCATCATTGTTGACGTTCAGAACGACTT
CCTTCCAACGGGCAGTCTTGCGGTGCCGCAAGGCGATGATGTCATCCCCG
TGATCAATCACCTCGTCACCACAATCCACTTCACCGGAGGTGTGTACATG
TCAAAGGACTGGCACCCTTCCACCCACACATCCTTCGCCAGCAATCACCC
CGGAAAGACACACTTCGACACTGTCGCAATCGAAATCGATGGCGTGCAGT
ACGACCAGACAATGTGGCCTGACCACTGCGTTCAGCACTCGCACGGAGCG
CAGTTTGCACACAATCTACAGATCGCTGATAACGCTGTCACCATCCTCAA
AGGTATGGACCCGCGCTACGACTCCTACTCTGCGTTCTATGACAATGCGA
AGAAGACACACACAAACCTTGACAGCTTGTTGAAGAACGCAAACGTAAGC
ACCGTACATATCTGCGGGCTGGCCACCGATGTATGCGTGCTTTTCACCGT
GATGGATGCCATCACGCTCGGCTATCACACCGTAATTGTTTCAGATGCAT
GTAGAGGTCTATCACCCGAATCAACGGACCAAGCTGTCTCCAAAATGAAG
GCTGCAGGCGCAAAGGTTGTCACAGCCGCAGAGCTAGAACAGCAAGTATG
A
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