Gcaud8533.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud8533.t1
Unique Name	Gcaud8533.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	596

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_907_length_16250_cov_3.969800	contig	NODE_907_length_16250_cov_3.969800:10338..12125 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	10224.XP_006823243.1
PFAMs	Nucleotid_trans
Max annot lvl	33208\|Metazoa
KEGG ko	ko:K11714
Evalue	9.58e-25
EggNOG OGs	2CZA0@1\|root,2S9AH@2759\|Eukaryota,3ABW2@33154\|Opisthokonta,3BVK1@33208\|Metazoa,3DCNX@33213\|Bilateria
Description	Nucleotide-diphospho-sugar transferase
COG category	S
CAZy	GT77
BRITE	ko00000,ko01000,ko01003

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud8533	Gcaud8533	Gracilaria caudata M_176_S67 male	gene	NODE_907_length_16250_cov_3.969800 10338..12125 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud8533.t1.stop1	Gcaud8533.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_907_length_16250_cov_3.969800 10338..10340 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud8533.t1.CDS1	Gcaud8533.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_907_length_16250_cov_3.969800 10338..12125 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud8533.t1.exon1	Gcaud8533.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_907_length_16250_cov_3.969800 10338..12125 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud8533.t1.start1	Gcaud8533.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_907_length_16250_cov_3.969800 12123..12125 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud8533.t1	Gcaud8533.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_907_length_16250_cov_3.969800 10338..12125 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_907_length_16250_cov_3.969800:10338..12125-
coding sequence from alignment at NODE_907_length_16250_cov_3.969800:10338..12125-

mRNA sequence

>Gcaud8533.t1 ID=Gcaud8533.t1|Name=Gcaud8533.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=596bp
MFVSLVNSSTAHQSLLGLSNLNVAGSTCVHRIYVATEADLKALARYHGFC
VGRGEGCAVETHLHNGVRMWGDLSLRDVASSTKIIFLRDSISFTDRALAW
IQLAHQATRRHYADGGRQDIGGAVIGCYGEGGYTPWWAMPVGSLNTTCAF
SPIRTYGPNVWQFFSHWFANQKREWVSWPHTWDTLPGVPAFWKSTNKNHR
DTRLTEFGEVVGKDYSYAHNSYLVWERWFPRWAANYTIRVLTAESNLGVS
LSGLSESTKSLQLESTPNDTALGLYSTSYGDVLSVGTVWYEPVDADLGSG
YLNALKKIVSQKPKMVSLTIVNHKFMELTRSWVCNVQGGRFAPPHIVWIT
LDEMSKQQVKELGIGETIDILDALSADNMDSQDVIYGQPAYWKLMLMRTR
LIRDLLDRGIDVFLFETDQVWLQNPFDYINKELEAGSDMVGTLDTQHNVA
GNTVLLRSVLSTRRMWSEVYSRFRADYQLKEVEKMEIHNSTFVKHDQHHL
SDLLLFNSEFIRDFPVALGLLNAQLFVGGSWYSGMYKTEESKRPVIINNN
FISGTEKKKSRAIKFGHWFLQADNKTCDMETVREALRYNFKSYPH*

spliced messenger RNA

>Gcaud8533.t1 ID=Gcaud8533.t1|Name=Gcaud8533.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1788bp|location=Sequence derived from alignment at NODE_907_length_16250_cov_3.969800:10338..12125- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTTCGTATCGCTGGTCAATTCATCTACGGCACATCAATCATTGCTAGG
TCTTTCGAATCTCAATGTGGCAGGCAGCACATGCGTACATCGAATTTACG
TTGCCACCGAGGCTGATTTGAAAGCGCTAGCGCGTTATCACGGCTTTTGC
GTTGGACGTGGCGAGGGATGTGCCGTGGAAACTCATTTGCACAACGGTGT
TCGCATGTGGGGCGACTTGTCGCTTCGCGACGTTGCAAGCAGCACGAAGA
TCATATTCTTGCGTGATAGTATTTCGTTTACGGACCGCGCGCTTGCCTGG
ATCCAATTAGCTCACCAAGCCACAAGGCGCCATTATGCAGATGGTGGACG
GCAGGACATCGGTGGAGCTGTAATTGGATGCTACGGCGAGGGCGGCTACA
CCCCGTGGTGGGCCATGCCGGTGGGTTCTTTGAATACAACTTGCGCCTTC
TCGCCCATTCGCACGTATGGTCCGAACGTTTGGCAATTTTTCTCTCACTG
GTTTGCCAACCAGAAAAGAGAATGGGTTTCATGGCCACACACATGGGATA
CCCTTCCTGGAGTCCCCGCGTTCTGGAAATCAACGAATAAGAATCACAGA
GATACACGCCTTACCGAGTTTGGAGAAGTGGTCGGGAAGGACTATTCCTA
CGCTCACAACTCATATCTTGTGTGGGAGCGATGGTTTCCGCGATGGGCTG
CAAACTATACAATTCGCGTTTTGACAGCGGAAAGCAACTTGGGAGTTTCA
CTATCGGGCCTTTCTGAGTCTACTAAATCGCTACAACTAGAATCCACGCC
TAATGATACTGCTCTTGGTCTGTATTCTACGTCCTACGGAGATGTACTAA
GCGTTGGTACAGTTTGGTATGAACCTGTTGATGCCGACCTAGGAAGTGGA
TACCTCAATGCCCTGAAGAAGATTGTCAGTCAGAAACCTAAAATGGTGTC
TTTGACAATTGTGAACCACAAGTTCATGGAACTCACTCGGAGCTGGGTGT
GCAATGTGCAGGGTGGAAGATTTGCTCCTCCCCATATCGTGTGGATCACT
TTGGATGAAATGTCAAAGCAGCAGGTGAAGGAATTGGGAATCGGCGAGAC
GATTGACATCTTGGACGCTCTTAGCGCCGATAACATGGATTCACAGGACG
TTATATACGGCCAACCCGCATATTGGAAGCTCATGCTCATGCGTACTCGT
CTGATCCGCGACTTGCTTGACCGTGGCATTGATGTGTTTCTGTTTGAAAC
CGATCAGGTATGGTTACAGAACCCATTCGATTATATCAACAAAGAACTCG
AAGCCGGATCAGATATGGTTGGAACACTTGATACCCAACACAACGTCGCT
GGAAATACCGTACTGCTACGATCGGTTTTGTCGACTCGTCGAATGTGGAG
TGAAGTGTACTCGCGATTCAGAGCCGACTACCAATTGAAAGAGGTCGAGA
AGATGGAGATACATAACTCGACTTTCGTTAAGCATGACCAGCACCATCTC
AGTGACCTTCTTCTTTTTAACTCGGAATTTATTCGAGACTTTCCAGTTGC
ACTCGGGCTCCTCAACGCCCAGCTGTTTGTCGGCGGCTCGTGGTACTCGG
GAATGTACAAAACTGAAGAGTCGAAGCGGCCAGTGATCATCAATAACAAC
TTCATCTCAGGAACAGAGAAGAAAAAGAGTAGGGCAATCAAGTTTGGTCA
TTGGTTCCTGCAGGCGGATAACAAGACGTGTGATATGGAAACTGTTCGCG
AGGCTCTGCGGTATAACTTCAAAAGCTATCCGCACTAA

protein sequence of Gcaud8533.t1

>Gcaud8533.t1 ID=Gcaud8533.t1|Name=Gcaud8533.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=596bp
MFVSLVNSSTAHQSLLGLSNLNVAGSTCVHRIYVATEADLKALARYHGFC
VGRGEGCAVETHLHNGVRMWGDLSLRDVASSTKIIFLRDSISFTDRALAW
IQLAHQATRRHYADGGRQDIGGAVIGCYGEGGYTPWWAMPVGSLNTTCAF
SPIRTYGPNVWQFFSHWFANQKREWVSWPHTWDTLPGVPAFWKSTNKNHR
DTRLTEFGEVVGKDYSYAHNSYLVWERWFPRWAANYTIRVLTAESNLGVS
LSGLSESTKSLQLESTPNDTALGLYSTSYGDVLSVGTVWYEPVDADLGSG
YLNALKKIVSQKPKMVSLTIVNHKFMELTRSWVCNVQGGRFAPPHIVWIT
LDEMSKQQVKELGIGETIDILDALSADNMDSQDVIYGQPAYWKLMLMRTR
LIRDLLDRGIDVFLFETDQVWLQNPFDYINKELEAGSDMVGTLDTQHNVA
GNTVLLRSVLSTRRMWSEVYSRFRADYQLKEVEKMEIHNSTFVKHDQHHL
SDLLLFNSEFIRDFPVALGLLNAQLFVGGSWYSGMYKTEESKRPVIINNN
FISGTEKKKSRAIKFGHWFLQADNKTCDMETVREALRYNFKSYPH*

mRNA from alignment at NODE_907_length_16250_cov_3.969800:10338..12125-

Legend: polypeptideCDSexonstart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud8533.t1 ID=Gcaud8533.t1|Name=Gcaud8533.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1788bp|location=Sequence derived from alignment at NODE_907_length_16250_cov_3.969800:10338..12125- (Gracilaria caudata M_176_S67 male)
ATGTTCGTATCGCTGGTCAATTCATCTACGGCACATCAATCATTGCTAGG
TCTTTCGAATCTCAATGTGGCAGGCAGCACATGCGTACATCGAATTTACG
TTGCCACCGAGGCTGATTTGAAAGCGCTAGCGCGTTATCACGGCTTTTGC
GTTGGACGTGGCGAGGGATGTGCCGTGGAAACTCATTTGCACAACGGTGT
TCGCATGTGGGGCGACTTGTCGCTTCGCGACGTTGCAAGCAGCACGAAGA
TCATATTCTTGCGTGATAGTATTTCGTTTACGGACCGCGCGCTTGCCTGG
ATCCAATTAGCTCACCAAGCCACAAGGCGCCATTATGCAGATGGTGGACG
GCAGGACATCGGTGGAGCTGTAATTGGATGCTACGGCGAGGGCGGCTACA
CCCCGTGGTGGGCCATGCCGGTGGGTTCTTTGAATACAACTTGCGCCTTC
TCGCCCATTCGCACGTATGGTCCGAACGTTTGGCAATTTTTCTCTCACTG
GTTTGCCAACCAGAAAAGAGAATGGGTTTCATGGCCACACACATGGGATA
CCCTTCCTGGAGTCCCCGCGTTCTGGAAATCAACGAATAAGAATCACAGA
GATACACGCCTTACCGAGTTTGGAGAAGTGGTCGGGAAGGACTATTCCTA
CGCTCACAACTCATATCTTGTGTGGGAGCGATGGTTTCCGCGATGGGCTG
CAAACTATACAATTCGCGTTTTGACAGCGGAAAGCAACTTGGGAGTTTCA
CTATCGGGCCTTTCTGAGTCTACTAAATCGCTACAACTAGAATCCACGCC
TAATGATACTGCTCTTGGTCTGTATTCTACGTCCTACGGAGATGTACTAA
GCGTTGGTACAGTTTGGTATGAACCTGTTGATGCCGACCTAGGAAGTGGA
TACCTCAATGCCCTGAAGAAGATTGTCAGTCAGAAACCTAAAATGGTGTC
TTTGACAATTGTGAACCACAAGTTCATGGAACTCACTCGGAGCTGGGTGT
GCAATGTGCAGGGTGGAAGATTTGCTCCTCCCCATATCGTGTGGATCACT
TTGGATGAAATGTCAAAGCAGCAGGTGAAGGAATTGGGAATCGGCGAGAC
GATTGACATCTTGGACGCTCTTAGCGCCGATAACATGGATTCACAGGACG
TTATATACGGCCAACCCGCATATTGGAAGCTCATGCTCATGCGTACTCGT
CTGATCCGCGACTTGCTTGACCGTGGCATTGATGTGTTTCTGTTTGAAAC
CGATCAGGTATGGTTACAGAACCCATTCGATTATATCAACAAAGAACTCG
AAGCCGGATCAGATATGGTTGGAACACTTGATACCCAACACAACGTCGCT
GGAAATACCGTACTGCTACGATCGGTTTTGTCGACTCGTCGAATGTGGAG
TGAAGTGTACTCGCGATTCAGAGCCGACTACCAATTGAAAGAGGTCGAGA
AGATGGAGATACATAACTCGACTTTCGTTAAGCATGACCAGCACCATCTC
AGTGACCTTCTTCTTTTTAACTCGGAATTTATTCGAGACTTTCCAGTTGC
ACTCGGGCTCCTCAACGCCCAGCTGTTTGTCGGCGGCTCGTGGTACTCGG
GAATGTACAAAACTGAAGAGTCGAAGCGGCCAGTGATCATCAATAACAAC
TTCATCTCAGGAACAGAGAAGAAAAAGAGTAGGGCAATCAAGTTTGGTCA
TTGGTTCCTGCAGGCGGATAACAAGACGTGTGATATGGAAACTGTTCGCG
AGGCTCTGCGGTATAACTTCAAAAGCTATCCGCACTAA

Coding sequence (CDS) from alignment at NODE_907_length_16250_cov_3.969800:10338..12125-

>Gcaud8533.t1 ID=Gcaud8533.t1|Name=Gcaud8533.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1788bp|location=Sequence derived from alignment at NODE_907_length_16250_cov_3.969800:10338..12125- (Gracilaria caudata M_176_S67 male)
ATGTTCGTATCGCTGGTCAATTCATCTACGGCACATCAATCATTGCTAGG
TCTTTCGAATCTCAATGTGGCAGGCAGCACATGCGTACATCGAATTTACG
TTGCCACCGAGGCTGATTTGAAAGCGCTAGCGCGTTATCACGGCTTTTGC
GTTGGACGTGGCGAGGGATGTGCCGTGGAAACTCATTTGCACAACGGTGT
TCGCATGTGGGGCGACTTGTCGCTTCGCGACGTTGCAAGCAGCACGAAGA
TCATATTCTTGCGTGATAGTATTTCGTTTACGGACCGCGCGCTTGCCTGG
ATCCAATTAGCTCACCAAGCCACAAGGCGCCATTATGCAGATGGTGGACG
GCAGGACATCGGTGGAGCTGTAATTGGATGCTACGGCGAGGGCGGCTACA
CCCCGTGGTGGGCCATGCCGGTGGGTTCTTTGAATACAACTTGCGCCTTC
TCGCCCATTCGCACGTATGGTCCGAACGTTTGGCAATTTTTCTCTCACTG
GTTTGCCAACCAGAAAAGAGAATGGGTTTCATGGCCACACACATGGGATA
CCCTTCCTGGAGTCCCCGCGTTCTGGAAATCAACGAATAAGAATCACAGA
GATACACGCCTTACCGAGTTTGGAGAAGTGGTCGGGAAGGACTATTCCTA
CGCTCACAACTCATATCTTGTGTGGGAGCGATGGTTTCCGCGATGGGCTG
CAAACTATACAATTCGCGTTTTGACAGCGGAAAGCAACTTGGGAGTTTCA
CTATCGGGCCTTTCTGAGTCTACTAAATCGCTACAACTAGAATCCACGCC
TAATGATACTGCTCTTGGTCTGTATTCTACGTCCTACGGAGATGTACTAA
GCGTTGGTACAGTTTGGTATGAACCTGTTGATGCCGACCTAGGAAGTGGA
TACCTCAATGCCCTGAAGAAGATTGTCAGTCAGAAACCTAAAATGGTGTC
TTTGACAATTGTGAACCACAAGTTCATGGAACTCACTCGGAGCTGGGTGT
GCAATGTGCAGGGTGGAAGATTTGCTCCTCCCCATATCGTGTGGATCACT
TTGGATGAAATGTCAAAGCAGCAGGTGAAGGAATTGGGAATCGGCGAGAC
GATTGACATCTTGGACGCTCTTAGCGCCGATAACATGGATTCACAGGACG
TTATATACGGCCAACCCGCATATTGGAAGCTCATGCTCATGCGTACTCGT
CTGATCCGCGACTTGCTTGACCGTGGCATTGATGTGTTTCTGTTTGAAAC
CGATCAGGTATGGTTACAGAACCCATTCGATTATATCAACAAAGAACTCG
AAGCCGGATCAGATATGGTTGGAACACTTGATACCCAACACAACGTCGCT
GGAAATACCGTACTGCTACGATCGGTTTTGTCGACTCGTCGAATGTGGAG
TGAAGTGTACTCGCGATTCAGAGCCGACTACCAATTGAAAGAGGTCGAGA
AGATGGAGATACATAACTCGACTTTCGTTAAGCATGACCAGCACCATCTC
AGTGACCTTCTTCTTTTTAACTCGGAATTTATTCGAGACTTTCCAGTTGC
ACTCGGGCTCCTCAACGCCCAGCTGTTTGTCGGCGGCTCGTGGTACTCGG
GAATGTACAAAACTGAAGAGTCGAAGCGGCCAGTGATCATCAATAACAAC
TTCATCTCAGGAACAGAGAAGAAAAAGAGTAGGGCAATCAAGTTTGGTCA
TTGGTTCCTGCAGGCGGATAACAAGACGTGTGATATGGAAACTGTTCGCG
AGGCTCTGCGGTATAACTTCAAAAGCTATCCGCACTAA