Gcaud853.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud853.t1
Unique Name	Gcaud853.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	273

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_1229_length_12344_cov_4.015506	contig	NODE_1229_length_12344_cov_4.015506:9876..10694 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	3067.XP_002947837.1
PFAMs	CRAL_TRIO
Max annot lvl	33090\|Viridiplantae
Evalue	3.84e-22
EggNOG OGs	KOG1470@1\|root,KOG1470@2759\|Eukaryota,37NKQ@33090\|Viridiplantae
Description	Cellular retinaldehyde-binding triple function, C-terminal (InterPro IPR001251), Phosphatidylinositol transfer protein-like, N-terminal (InterPro IPR011074)
COG category	I

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud853	Gcaud853	Gracilaria caudata M_176_S67 male	gene	NODE_1229_length_12344_cov_4.015506 9876..10694 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud853.t1.start1	Gcaud853.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_1229_length_12344_cov_4.015506 9876..9878 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud853.t1.CDS1	Gcaud853.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_1229_length_12344_cov_4.015506 9876..10694 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud853.t1.exon1	Gcaud853.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_1229_length_12344_cov_4.015506 9876..10694 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud853.t1.stop1	Gcaud853.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_1229_length_12344_cov_4.015506 10692..10694 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud853.t1	Gcaud853.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_1229_length_12344_cov_4.015506 9876..10694 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_1229_length_12344_cov_4.015506:9876..10694+
coding sequence from alignment at NODE_1229_length_12344_cov_4.015506:9876..10694+

mRNA sequence

>Gcaud853.t1 ID=Gcaud853.t1|Name=Gcaud853.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=273bp
MSPTVDQAQEVLRRAHRRVEETGVKVEEDDSFLTIATAARYLRGYKNENM
AAKNMASTFQYRRLVQADDLGTDYSSYKTVWTELEKRSMFLASKSDGCTP
PSPVLILRKRGDAFDKRDFEEYRRAFFFTLECTAKIADAQLDVEDPVERQ
AGQWVIVMDMDGYSSKNSPPLSVSLETLRIFQNHFPERAKRIVILDAPSA
FSILWRMLSPFIDSVTRQKFIFLSRSDGDDHLKKILGEVVWNCVQMDLQR
GKETSAQLMIDAGLLRPLEIIS*

spliced messenger RNA

>Gcaud853.t1 ID=Gcaud853.t1|Name=Gcaud853.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=819bp|location=Sequence derived from alignment at NODE_1229_length_12344_cov_4.015506:9876..10694+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAGTCCCACAGTCGACCAAGCGCAAGAGGTGTTGCGTCGAGCACATCG
GCGTGTCGAAGAAACAGGGGTCAAAGTGGAGGAGGATGACTCATTCCTGA
CTATCGCAACAGCGGCTCGGTATCTTCGCGGTTACAAGAACGAAAATATG
GCCGCGAAGAACATGGCTTCAACATTTCAGTATCGAAGGTTGGTGCAGGC
TGATGACCTCGGTACAGACTACTCTTCGTACAAAACGGTGTGGACTGAAC
TGGAGAAACGAAGCATGTTTCTAGCATCCAAGTCTGATGGTTGTACTCCT
CCATCTCCGGTTCTGATTCTACGCAAACGTGGAGATGCCTTCGATAAACG
GGATTTTGAGGAGTATCGTCGTGCCTTCTTCTTTACCCTGGAATGTACTG
CAAAGATTGCAGACGCGCAACTAGATGTAGAAGATCCCGTTGAGCGCCAA
GCAGGCCAATGGGTAATCGTAATGGATATGGACGGGTATAGTTCGAAAAA
CAGTCCACCGCTTAGTGTGAGCTTGGAAACGTTGCGAATCTTCCAAAACC
ATTTCCCTGAACGAGCAAAACGGATAGTAATATTAGATGCACCCAGTGCG
TTTAGTATCCTGTGGAGAATGTTGTCTCCTTTCATTGACAGCGTAACTCG
CCAGAAATTTATCTTCCTATCTCGCTCCGACGGAGATGATCATCTGAAGA
AGATTCTCGGAGAAGTCGTATGGAACTGTGTCCAAATGGACCTTCAAAGA
GGCAAAGAAACGAGTGCTCAATTGATGATCGATGCAGGTCTTCTTAGACC
CTTAGAAATTATTTCATGA

protein sequence of Gcaud853.t1

>Gcaud853.t1 ID=Gcaud853.t1|Name=Gcaud853.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=273bp
MSPTVDQAQEVLRRAHRRVEETGVKVEEDDSFLTIATAARYLRGYKNENM
AAKNMASTFQYRRLVQADDLGTDYSSYKTVWTELEKRSMFLASKSDGCTP
PSPVLILRKRGDAFDKRDFEEYRRAFFFTLECTAKIADAQLDVEDPVERQ
AGQWVIVMDMDGYSSKNSPPLSVSLETLRIFQNHFPERAKRIVILDAPSA
FSILWRMLSPFIDSVTRQKFIFLSRSDGDDHLKKILGEVVWNCVQMDLQR
GKETSAQLMIDAGLLRPLEIIS*

mRNA from alignment at NODE_1229_length_12344_cov_4.015506:9876..10694+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud853.t1 ID=Gcaud853.t1|Name=Gcaud853.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=819bp|location=Sequence derived from alignment at NODE_1229_length_12344_cov_4.015506:9876..10694+ (Gracilaria caudata M_176_S67 male)
ATGAGTCCCACAGTCGACCAAGCGCAAGAGGTGTTGCGTCGAGCACATCG
GCGTGTCGAAGAAACAGGGGTCAAAGTGGAGGAGGATGACTCATTCCTGA
CTATCGCAACAGCGGCTCGGTATCTTCGCGGTTACAAGAACGAAAATATG
GCCGCGAAGAACATGGCTTCAACATTTCAGTATCGAAGGTTGGTGCAGGC
TGATGACCTCGGTACAGACTACTCTTCGTACAAAACGGTGTGGACTGAAC
TGGAGAAACGAAGCATGTTTCTAGCATCCAAGTCTGATGGTTGTACTCCT
CCATCTCCGGTTCTGATTCTACGCAAACGTGGAGATGCCTTCGATAAACG
GGATTTTGAGGAGTATCGTCGTGCCTTCTTCTTTACCCTGGAATGTACTG
CAAAGATTGCAGACGCGCAACTAGATGTAGAAGATCCCGTTGAGCGCCAA
GCAGGCCAATGGGTAATCGTAATGGATATGGACGGGTATAGTTCGAAAAA
CAGTCCACCGCTTAGTGTGAGCTTGGAAACGTTGCGAATCTTCCAAAACC
ATTTCCCTGAACGAGCAAAACGGATAGTAATATTAGATGCACCCAGTGCG
TTTAGTATCCTGTGGAGAATGTTGTCTCCTTTCATTGACAGCGTAACTCG
CCAGAAATTTATCTTCCTATCTCGCTCCGACGGAGATGATCATCTGAAGA
AGATTCTCGGAGAAGTCGTATGGAACTGTGTCCAAATGGACCTTCAAAGA
GGCAAAGAAACGAGTGCTCAATTGATGATCGATGCAGGTCTTCTTAGACC
CTTAGAAATTATTTCATGA

Coding sequence (CDS) from alignment at NODE_1229_length_12344_cov_4.015506:9876..10694+

>Gcaud853.t1 ID=Gcaud853.t1|Name=Gcaud853.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=819bp|location=Sequence derived from alignment at NODE_1229_length_12344_cov_4.015506:9876..10694+ (Gracilaria caudata M_176_S67 male)
ATGAGTCCCACAGTCGACCAAGCGCAAGAGGTGTTGCGTCGAGCACATCG
GCGTGTCGAAGAAACAGGGGTCAAAGTGGAGGAGGATGACTCATTCCTGA
CTATCGCAACAGCGGCTCGGTATCTTCGCGGTTACAAGAACGAAAATATG
GCCGCGAAGAACATGGCTTCAACATTTCAGTATCGAAGGTTGGTGCAGGC
TGATGACCTCGGTACAGACTACTCTTCGTACAAAACGGTGTGGACTGAAC
TGGAGAAACGAAGCATGTTTCTAGCATCCAAGTCTGATGGTTGTACTCCT
CCATCTCCGGTTCTGATTCTACGCAAACGTGGAGATGCCTTCGATAAACG
GGATTTTGAGGAGTATCGTCGTGCCTTCTTCTTTACCCTGGAATGTACTG
CAAAGATTGCAGACGCGCAACTAGATGTAGAAGATCCCGTTGAGCGCCAA
GCAGGCCAATGGGTAATCGTAATGGATATGGACGGGTATAGTTCGAAAAA
CAGTCCACCGCTTAGTGTGAGCTTGGAAACGTTGCGAATCTTCCAAAACC
ATTTCCCTGAACGAGCAAAACGGATAGTAATATTAGATGCACCCAGTGCG
TTTAGTATCCTGTGGAGAATGTTGTCTCCTTTCATTGACAGCGTAACTCG
CCAGAAATTTATCTTCCTATCTCGCTCCGACGGAGATGATCATCTGAAGA
AGATTCTCGGAGAAGTCGTATGGAACTGTGTCCAAATGGACCTTCAAAGA
GGCAAAGAAACGAGTGCTCAATTGATGATCGATGCAGGTCTTCTTAGACC
CTTAGAAATTATTTCATGA