Gcaud8529.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGcaud8529.t1
Unique NameGcaud8529.t1
TypemRNA
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length266
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_4404_length_2299_cov_3.762681contigNODE_4404_length_2299_cov_3.762681:220..1017 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog88036.EFJ36231
PFAMsCCT,zf-B_box
Max annot lvl33090|Viridiplantae
KEGG koko:K19720
KEGG Pathwayko04611,ko04926,ko04933,ko04974,ko05146,map04611,map04926,map04933,map04974,map05146
Evalue2.73e-09
EggNOG OGsCOG5641@1|root,KOG1601@2759|Eukaryota,37P0B@33090|Viridiplantae
DescriptionZinc finger protein CONSTANS-like
COG categoryK
BRITEko00000,ko00001,ko00536
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud8529Gcaud8529Gracilaria caudata M_176_S67 malegeneNODE_4404_length_2299_cov_3.762681 220..1017 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud8529.t1.stop1Gcaud8529.t1.stop1Gracilaria caudata M_176_S67 malestop_codonNODE_4404_length_2299_cov_3.762681 220..222 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud8529.t1.CDS1Gcaud8529.t1.CDS1Gracilaria caudata M_176_S67 maleCDSNODE_4404_length_2299_cov_3.762681 220..1017 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud8529.t1.exon1Gcaud8529.t1.exon1Gracilaria caudata M_176_S67 maleexonNODE_4404_length_2299_cov_3.762681 220..1017 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud8529.t1.start1Gcaud8529.t1.start1Gracilaria caudata M_176_S67 malestart_codonNODE_4404_length_2299_cov_3.762681 1015..1017 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud8529.t1Gcaud8529.t1Gracilaria caudata M_176_S67 malepolypeptideNODE_4404_length_2299_cov_3.762681 220..1017 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gcaud8529.t1 ID=Gcaud8529.t1|Name=Gcaud8529.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=266bp
MVRNCEMCPEDHAVMATVYCAADACYLCAKCDTEVHSANRLAQRHVRSAV
AACEMEGSSIHDESEEALVPDVNRLQDDTDTLTFEDAADYDFSELGLGRM
PGLTSVEDMGIWGEGKLDKNWDVNWEQVVQDDFVHVVPDMEPRSDRIVED
SIKVEPTVVSEKKELRLGVKRSREQEHQAVDEEEEQKALERRRKRRKEAL
ERFRSKRANRSFAKRVRYECRKQLADSRPRVKGRFVRKVEMALYRKYGNM
YREHLHELESSNGSC*
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spliced messenger RNA

>Gcaud8529.t1 ID=Gcaud8529.t1|Name=Gcaud8529.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=798bp|location=Sequence derived from alignment at NODE_4404_length_2299_cov_3.762681:220..1017- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGTTCGCAACTGCGAAATGTGCCCCGAGGATCACGCCGTAATGGCCAC
AGTGTACTGTGCGGCAGACGCCTGCTACCTGTGCGCAAAATGTGACACCG
AGGTGCACAGCGCCAACCGTCTGGCACAACGCCATGTACGAAGCGCAGTC
GCCGCATGCGAAATGGAAGGATCATCCATCCACGACGAGTCCGAAGAAGC
TCTTGTGCCAGACGTGAACAGACTGCAGGACGACACAGACACACTCACTT
TCGAAGACGCCGCCGACTACGACTTTAGCGAGCTTGGGCTGGGACGCATG
CCGGGCCTCACTAGCGTAGAGGACATGGGCATCTGGGGTGAGGGTAAACT
GGACAAGAACTGGGATGTCAACTGGGAGCAGGTTGTGCAGGACGACTTCG
TGCACGTCGTACCCGACATGGAGCCGCGCTCAGATAGAATTGTAGAGGAC
AGCATCAAGGTGGAGCCCACGGTGGTGTCAGAGAAGAAGGAGCTGCGGTT
GGGTGTGAAGCGCAGCAGAGAACAGGAGCACCAAGCAGTGGACGAGGAGG
AGGAACAGAAGGCGCTGGAGAGAAGGAGAAAGCGCAGAAAGGAAGCGCTG
GAAAGATTCCGCTCCAAGAGGGCGAACCGCTCTTTCGCCAAGCGTGTGAG
ATACGAATGCAGAAAGCAACTGGCGGACAGCAGACCGCGGGTGAAGGGGC
GGTTTGTGAGGAAGGTGGAGATGGCTTTGTATCGGAAATATGGGAACATG
TACAGAGAGCACTTGCATGAGCTGGAGAGTTCGAACGGGTCATGCTAA
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protein sequence of Gcaud8529.t1

>Gcaud8529.t1 ID=Gcaud8529.t1|Name=Gcaud8529.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=266bp
MVRNCEMCPEDHAVMATVYCAADACYLCAKCDTEVHSANRLAQRHVRSAV
AACEMEGSSIHDESEEALVPDVNRLQDDTDTLTFEDAADYDFSELGLGRM
PGLTSVEDMGIWGEGKLDKNWDVNWEQVVQDDFVHVVPDMEPRSDRIVED
SIKVEPTVVSEKKELRLGVKRSREQEHQAVDEEEEQKALERRRKRRKEAL
ERFRSKRANRSFAKRVRYECRKQLADSRPRVKGRFVRKVEMALYRKYGNM
YREHLHELESSNGSC*
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mRNA from alignment at NODE_4404_length_2299_cov_3.762681:220..1017-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gcaud8529.t1 ID=Gcaud8529.t1|Name=Gcaud8529.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=798bp|location=Sequence derived from alignment at NODE_4404_length_2299_cov_3.762681:220..1017- (Gracilaria caudata M_176_S67 male)
ATGGTTCGCAACTGCGAAATGTGCCCCGAGGATCACGCCGTAATGGCCAC
AGTGTACTGTGCGGCAGACGCCTGCTACCTGTGCGCAAAATGTGACACCG
AGGTGCACAGCGCCAACCGTCTGGCACAACGCCATGTACGAAGCGCAGTC
GCCGCATGCGAAATGGAAGGATCATCCATCCACGACGAGTCCGAAGAAGC
TCTTGTGCCAGACGTGAACAGACTGCAGGACGACACAGACACACTCACTT
TCGAAGACGCCGCCGACTACGACTTTAGCGAGCTTGGGCTGGGACGCATG
CCGGGCCTCACTAGCGTAGAGGACATGGGCATCTGGGGTGAGGGTAAACT
GGACAAGAACTGGGATGTCAACTGGGAGCAGGTTGTGCAGGACGACTTCG
TGCACGTCGTACCCGACATGGAGCCGCGCTCAGATAGAATTGTAGAGGAC
AGCATCAAGGTGGAGCCCACGGTGGTGTCAGAGAAGAAGGAGCTGCGGTT
GGGTGTGAAGCGCAGCAGAGAACAGGAGCACCAAGCAGTGGACGAGGAGG
AGGAACAGAAGGCGCTGGAGAGAAGGAGAAAGCGCAGAAAGGAAGCGCTG
GAAAGATTCCGCTCCAAGAGGGCGAACCGCTCTTTCGCCAAGCGTGTGAG
ATACGAATGCAGAAAGCAACTGGCGGACAGCAGACCGCGGGTGAAGGGGC
GGTTTGTGAGGAAGGTGGAGATGGCTTTGTATCGGAAATATGGGAACATG
TACAGAGAGCACTTGCATGAGCTGGAGAGTTCGAACGGGTCATGCTAA
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Coding sequence (CDS) from alignment at NODE_4404_length_2299_cov_3.762681:220..1017-

>Gcaud8529.t1 ID=Gcaud8529.t1|Name=Gcaud8529.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=798bp|location=Sequence derived from alignment at NODE_4404_length_2299_cov_3.762681:220..1017- (Gracilaria caudata M_176_S67 male)
ATGGTTCGCAACTGCGAAATGTGCCCCGAGGATCACGCCGTAATGGCCAC
AGTGTACTGTGCGGCAGACGCCTGCTACCTGTGCGCAAAATGTGACACCG
AGGTGCACAGCGCCAACCGTCTGGCACAACGCCATGTACGAAGCGCAGTC
GCCGCATGCGAAATGGAAGGATCATCCATCCACGACGAGTCCGAAGAAGC
TCTTGTGCCAGACGTGAACAGACTGCAGGACGACACAGACACACTCACTT
TCGAAGACGCCGCCGACTACGACTTTAGCGAGCTTGGGCTGGGACGCATG
CCGGGCCTCACTAGCGTAGAGGACATGGGCATCTGGGGTGAGGGTAAACT
GGACAAGAACTGGGATGTCAACTGGGAGCAGGTTGTGCAGGACGACTTCG
TGCACGTCGTACCCGACATGGAGCCGCGCTCAGATAGAATTGTAGAGGAC
AGCATCAAGGTGGAGCCCACGGTGGTGTCAGAGAAGAAGGAGCTGCGGTT
GGGTGTGAAGCGCAGCAGAGAACAGGAGCACCAAGCAGTGGACGAGGAGG
AGGAACAGAAGGCGCTGGAGAGAAGGAGAAAGCGCAGAAAGGAAGCGCTG
GAAAGATTCCGCTCCAAGAGGGCGAACCGCTCTTTCGCCAAGCGTGTGAG
ATACGAATGCAGAAAGCAACTGGCGGACAGCAGACCGCGGGTGAAGGGGC
GGTTTGTGAGGAAGGTGGAGATGGCTTTGTATCGGAAATATGGGAACATG
TACAGAGAGCACTTGCATGAGCTGGAGAGTTCGAACGGGTCATGCTAA
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