Gcaud8527.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGcaud8527.t1
Unique NameGcaud8527.t1
TypemRNA
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length367
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_2681_length_4965_cov_8.477226contigNODE_2681_length_4965_cov_8.477226:3537..4637 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog2880.D7FHI2
PFAMsHydrolase_4
Max annot lvl2759|Eukaryota
KEGG rclassRC00020,RC00041
KEGG koko:K01054
KEGG ReactionR01351
KEGG Pathwayko00561,ko01100,ko04714,ko04723,ko04923,map00561,map01100,map04714,map04723,map04923
KEGG ModuleM00098
GOsGO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005740,GO:0005741,GO:0005783,GO:0005811,GO:0005886,GO:0006629,GO:0006638,GO:0006639,GO:0006641,GO:0008150,GO:0008152,GO:0009056,GO:0009966,GO:0009987,GO:0010646,GO:0012505,GO:0016020,GO:0016042,GO:0016298,GO:0016787,GO:0016788,GO:0017171,GO:0019433,GO:0019867,GO:0023051,GO:0031090,GO:0031966,GO:0031967,GO:0031968,GO:0031975,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0044237,GO:0044238,GO:0044242,GO:0044248,GO:0044255,GO:0044422,GO:0044424,GO:0044429,GO:0044444,GO:0044446,GO:0044464,GO:0046461,GO:0046464,GO:0046486,GO:0046503,GO:0047372,GO:0048583,GO:0050789,GO:0050794,GO:0052689,GO:0065007,GO:0071704,GO:0071944,GO:0098588,GO:0098805,GO:1901575
Evalue1.06e-38
EggNOG OGsCOG2267@1|root,KOG1455@2759|Eukaryota
EC3.1.1.23
Descriptionacylglycerol lipase activity
COG categoryI
BRITEko00000,ko00001,ko00002,ko01000,ko01002
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud8527Gcaud8527Gracilaria caudata M_176_S67 malegeneNODE_2681_length_4965_cov_8.477226 3537..4637 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud8527.t1.stop1Gcaud8527.t1.stop1Gracilaria caudata M_176_S67 malestop_codonNODE_2681_length_4965_cov_8.477226 3537..3539 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud8527.t1.CDS1Gcaud8527.t1.CDS1Gracilaria caudata M_176_S67 maleCDSNODE_2681_length_4965_cov_8.477226 3537..4637 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud8527.t1.exon1Gcaud8527.t1.exon1Gracilaria caudata M_176_S67 maleexonNODE_2681_length_4965_cov_8.477226 3537..4637 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud8527.t1.start1Gcaud8527.t1.start1Gracilaria caudata M_176_S67 malestart_codonNODE_2681_length_4965_cov_8.477226 4635..4637 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud8527.t1Gcaud8527.t1Gracilaria caudata M_176_S67 malepolypeptideNODE_2681_length_4965_cov_8.477226 3537..4637 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gcaud8527.t1 ID=Gcaud8527.t1|Name=Gcaud8527.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=367bp
MRPVAFSNPWNPVSLRRSHNVHVALDPLRIHNENTQGNLWNRSQVHIQTS
CSTDAPNLGAGSTTERVPSVRHPRLNVLRRVWDPSDDPKGGLLICCGLQW
HSGWFSTIAQPLRREGILVFSVDNLSCGRSDNLENVRGLIYDVDDHVEDL
VAVLDEMRKGLPESAPVFVLGESSGGVLACMMALRPEIARSVQGWILCAP
AITVAEELLPPPVVQKAVKFLGKLFPTLPVPGEDISGETWDAAFGDDISA
DIARRDEHVLFNVPVRLGTASAMLGAMQDIENELNRGNLFMKRLLVLHNC
LDQRTKYEGSEKLVDRVRTNHGAVLEDPGGSAHQLFQEHPDIAKLVVQRI
VGFVLSCLSHKGVGFA*
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spliced messenger RNA

>Gcaud8527.t1 ID=Gcaud8527.t1|Name=Gcaud8527.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1101bp|location=Sequence derived from alignment at NODE_2681_length_4965_cov_8.477226:3537..4637- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCGGCCCGTAGCGTTCTCGAATCCATGGAACCCTGTTTCCCTTCGTCG
CTCTCATAACGTCCATGTAGCGCTCGACCCACTTCGTATCCACAACGAAA
ACACTCAAGGAAATCTATGGAACAGATCCCAAGTTCATATTCAAACTTCG
TGCTCGACTGACGCTCCAAATTTAGGGGCTGGAAGTACTACAGAACGTGT
TCCATCAGTTCGTCATCCTAGACTGAACGTACTTCGCCGCGTTTGGGACC
CTTCTGATGATCCCAAAGGTGGCCTCTTGATTTGTTGCGGACTGCAATGG
CACTCGGGATGGTTCTCCACAATTGCTCAACCTCTTCGCAGAGAAGGGAT
TCTAGTTTTCTCCGTAGATAATCTGTCTTGTGGCAGAAGCGATAATCTGG
AAAACGTTCGAGGCCTTATATATGATGTTGATGATCACGTCGAGGACTTG
GTGGCTGTGCTTGATGAAATGAGGAAAGGCCTCCCAGAAAGTGCTCCTGT
TTTCGTGCTAGGTGAAAGCAGCGGCGGCGTGTTGGCCTGCATGATGGCGC
TCCGGCCAGAAATCGCTCGAAGTGTTCAGGGCTGGATCTTGTGTGCGCCA
GCCATCACGGTGGCAGAGGAGTTGCTTCCACCTCCCGTTGTGCAAAAGGC
GGTGAAGTTTCTAGGGAAGCTCTTCCCCACACTACCTGTCCCGGGAGAGG
ATATTAGTGGCGAAACATGGGACGCAGCTTTCGGAGATGACATCAGCGCA
GACATTGCTCGGCGTGATGAACATGTGCTGTTCAATGTGCCAGTACGCTT
AGGCACGGCGTCAGCAATGCTAGGAGCAATGCAGGACATCGAAAATGAGT
TGAACAGAGGTAACTTGTTTATGAAACGATTGCTCGTTTTGCACAATTGC
CTAGACCAGCGTACAAAGTATGAGGGGTCGGAGAAGCTGGTTGACCGTGT
ACGTACGAACCACGGAGCTGTACTGGAGGATCCTGGGGGTTCAGCCCATC
AATTGTTCCAAGAACATCCTGACATTGCAAAGCTCGTTGTACAACGAATA
GTTGGCTTCGTTCTCTCGTGCTTGTCACACAAGGGTGTGGGTTTTGCGTA
G
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protein sequence of Gcaud8527.t1

>Gcaud8527.t1 ID=Gcaud8527.t1|Name=Gcaud8527.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=367bp
MRPVAFSNPWNPVSLRRSHNVHVALDPLRIHNENTQGNLWNRSQVHIQTS
CSTDAPNLGAGSTTERVPSVRHPRLNVLRRVWDPSDDPKGGLLICCGLQW
HSGWFSTIAQPLRREGILVFSVDNLSCGRSDNLENVRGLIYDVDDHVEDL
VAVLDEMRKGLPESAPVFVLGESSGGVLACMMALRPEIARSVQGWILCAP
AITVAEELLPPPVVQKAVKFLGKLFPTLPVPGEDISGETWDAAFGDDISA
DIARRDEHVLFNVPVRLGTASAMLGAMQDIENELNRGNLFMKRLLVLHNC
LDQRTKYEGSEKLVDRVRTNHGAVLEDPGGSAHQLFQEHPDIAKLVVQRI
VGFVLSCLSHKGVGFA*
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mRNA from alignment at NODE_2681_length_4965_cov_8.477226:3537..4637-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gcaud8527.t1 ID=Gcaud8527.t1|Name=Gcaud8527.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1101bp|location=Sequence derived from alignment at NODE_2681_length_4965_cov_8.477226:3537..4637- (Gracilaria caudata M_176_S67 male)
ATGCGGCCCGTAGCGTTCTCGAATCCATGGAACCCTGTTTCCCTTCGTCG
CTCTCATAACGTCCATGTAGCGCTCGACCCACTTCGTATCCACAACGAAA
ACACTCAAGGAAATCTATGGAACAGATCCCAAGTTCATATTCAAACTTCG
TGCTCGACTGACGCTCCAAATTTAGGGGCTGGAAGTACTACAGAACGTGT
TCCATCAGTTCGTCATCCTAGACTGAACGTACTTCGCCGCGTTTGGGACC
CTTCTGATGATCCCAAAGGTGGCCTCTTGATTTGTTGCGGACTGCAATGG
CACTCGGGATGGTTCTCCACAATTGCTCAACCTCTTCGCAGAGAAGGGAT
TCTAGTTTTCTCCGTAGATAATCTGTCTTGTGGCAGAAGCGATAATCTGG
AAAACGTTCGAGGCCTTATATATGATGTTGATGATCACGTCGAGGACTTG
GTGGCTGTGCTTGATGAAATGAGGAAAGGCCTCCCAGAAAGTGCTCCTGT
TTTCGTGCTAGGTGAAAGCAGCGGCGGCGTGTTGGCCTGCATGATGGCGC
TCCGGCCAGAAATCGCTCGAAGTGTTCAGGGCTGGATCTTGTGTGCGCCA
GCCATCACGGTGGCAGAGGAGTTGCTTCCACCTCCCGTTGTGCAAAAGGC
GGTGAAGTTTCTAGGGAAGCTCTTCCCCACACTACCTGTCCCGGGAGAGG
ATATTAGTGGCGAAACATGGGACGCAGCTTTCGGAGATGACATCAGCGCA
GACATTGCTCGGCGTGATGAACATGTGCTGTTCAATGTGCCAGTACGCTT
AGGCACGGCGTCAGCAATGCTAGGAGCAATGCAGGACATCGAAAATGAGT
TGAACAGAGGTAACTTGTTTATGAAACGATTGCTCGTTTTGCACAATTGC
CTAGACCAGCGTACAAAGTATGAGGGGTCGGAGAAGCTGGTTGACCGTGT
ACGTACGAACCACGGAGCTGTACTGGAGGATCCTGGGGGTTCAGCCCATC
AATTGTTCCAAGAACATCCTGACATTGCAAAGCTCGTTGTACAACGAATA
GTTGGCTTCGTTCTCTCGTGCTTGTCACACAAGGGTGTGGGTTTTGCGTA
G
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Coding sequence (CDS) from alignment at NODE_2681_length_4965_cov_8.477226:3537..4637-

>Gcaud8527.t1 ID=Gcaud8527.t1|Name=Gcaud8527.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1101bp|location=Sequence derived from alignment at NODE_2681_length_4965_cov_8.477226:3537..4637- (Gracilaria caudata M_176_S67 male)
ATGCGGCCCGTAGCGTTCTCGAATCCATGGAACCCTGTTTCCCTTCGTCG
CTCTCATAACGTCCATGTAGCGCTCGACCCACTTCGTATCCACAACGAAA
ACACTCAAGGAAATCTATGGAACAGATCCCAAGTTCATATTCAAACTTCG
TGCTCGACTGACGCTCCAAATTTAGGGGCTGGAAGTACTACAGAACGTGT
TCCATCAGTTCGTCATCCTAGACTGAACGTACTTCGCCGCGTTTGGGACC
CTTCTGATGATCCCAAAGGTGGCCTCTTGATTTGTTGCGGACTGCAATGG
CACTCGGGATGGTTCTCCACAATTGCTCAACCTCTTCGCAGAGAAGGGAT
TCTAGTTTTCTCCGTAGATAATCTGTCTTGTGGCAGAAGCGATAATCTGG
AAAACGTTCGAGGCCTTATATATGATGTTGATGATCACGTCGAGGACTTG
GTGGCTGTGCTTGATGAAATGAGGAAAGGCCTCCCAGAAAGTGCTCCTGT
TTTCGTGCTAGGTGAAAGCAGCGGCGGCGTGTTGGCCTGCATGATGGCGC
TCCGGCCAGAAATCGCTCGAAGTGTTCAGGGCTGGATCTTGTGTGCGCCA
GCCATCACGGTGGCAGAGGAGTTGCTTCCACCTCCCGTTGTGCAAAAGGC
GGTGAAGTTTCTAGGGAAGCTCTTCCCCACACTACCTGTCCCGGGAGAGG
ATATTAGTGGCGAAACATGGGACGCAGCTTTCGGAGATGACATCAGCGCA
GACATTGCTCGGCGTGATGAACATGTGCTGTTCAATGTGCCAGTACGCTT
AGGCACGGCGTCAGCAATGCTAGGAGCAATGCAGGACATCGAAAATGAGT
TGAACAGAGGTAACTTGTTTATGAAACGATTGCTCGTTTTGCACAATTGC
CTAGACCAGCGTACAAAGTATGAGGGGTCGGAGAAGCTGGTTGACCGTGT
ACGTACGAACCACGGAGCTGTACTGGAGGATCCTGGGGGTTCAGCCCATC
AATTGTTCCAAGAACATCCTGACATTGCAAAGCTCGTTGTACAACGAATA
GTTGGCTTCGTTCTCTCGTGCTTGTCACACAAGGGTGTGGGTTTTGCGTA
G
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