Gcaud8520.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud8520.t1
Unique Name	Gcaud8520.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	469

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_243_length_34547_cov_4.802386	contig	NODE_243_length_34547_cov_4.802386:13133..14539 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	208444.JNYY01000014_gene4295
PFAMs	Cutinase,PKD
Max annot lvl	201174\|Actinobacteria
Evalue	2.03e-23
EggNOG OGs	COG2304@1\|root,COG3291@1\|root,COG2304@2\|Bacteria,COG3291@2\|Bacteria,2I5F3@201174\|Actinobacteria
Description	Repeats in polycystic kidney disease 1 (PKD1) and other proteins
COG category	S

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud8520	Gcaud8520	Gracilaria caudata M_176_S67 male	gene	NODE_243_length_34547_cov_4.802386 13133..14539 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud8520.t1.start1	Gcaud8520.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_243_length_34547_cov_4.802386 13133..13135 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud8520.t1.CDS1	Gcaud8520.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_243_length_34547_cov_4.802386 13133..14539 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud8520.t1.exon1	Gcaud8520.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_243_length_34547_cov_4.802386 13133..14539 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud8520.t1.stop1	Gcaud8520.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_243_length_34547_cov_4.802386 14537..14539 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud8520.t1	Gcaud8520.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_243_length_34547_cov_4.802386 13133..14539 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_243_length_34547_cov_4.802386:13133..14539+
coding sequence from alignment at NODE_243_length_34547_cov_4.802386:13133..14539+

mRNA sequence

>Gcaud8520.t1 ID=Gcaud8520.t1|Name=Gcaud8520.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=469bp
MKLYFRTLIALALSLFSVAYAGEAVGPCGSAFVDALQSGPGTITITLTVS
LKGQFAPPLIQVGAAGYWFNKNTGSVGAISTPGNNPVYFRDIGLYIDQWI
VTPRSGIVEIGVPLIEAIHFGGICFGLFPRATVTVSDSTDPIVLLPETSV
ALQKKSADDLAFVIDTTGSMSDDIAAVKSSATEIINTLAANSADYRVALV
QYNDPSAGVVQGFTSNTATITAAINGLGASGGGDTPEHVYGGLQAAIKLP
WRLEATRTIITMGDAPPKDPEPGTGLTQAKILALANSVDISVDTSPTVRQ
LLRLLSARMPALTTINVPLSGFLPFFMVPIGGSSATQSSFSALASMTNGS
VFPAASASDVVGALEKAIIEGTSGSASGAKPVERLVLTSICWETDNRHRM
RVRNPNGFDVPYSWDVYRTSKKGDGVAQPGDNLFTIEGISRTSTVRLFWK
DENNVQKQTQKALNNKNC*

spliced messenger RNA

>Gcaud8520.t1 ID=Gcaud8520.t1|Name=Gcaud8520.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1407bp|location=Sequence derived from alignment at NODE_243_length_34547_cov_4.802386:13133..14539+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAAGTTATACTTTCGCACTCTTATTGCATTGGCACTCTCTTTATTCTC
CGTTGCGTATGCTGGAGAGGCTGTTGGTCCATGTGGTTCCGCATTCGTAG
ATGCCTTGCAGAGCGGACCAGGAACAATAACAATCACGCTTACGGTGAGC
TTAAAGGGACAATTTGCTCCGCCACTGATCCAAGTCGGGGCAGCAGGATA
CTGGTTTAACAAGAACACAGGGTCGGTTGGAGCCATATCCACACCGGGAA
ACAATCCAGTTTACTTCCGGGACATCGGGTTGTACATAGATCAGTGGATT
GTAACGCCACGCAGCGGGATTGTTGAGATTGGTGTGCCACTCATCGAGGC
TATTCACTTTGGAGGTATATGTTTCGGGCTCTTTCCACGTGCTACTGTCA
CTGTGAGTGATAGCACGGACCCTATTGTGCTGCTTCCGGAGACGAGTGTT
GCACTTCAGAAGAAGAGTGCCGATGATCTCGCATTCGTGATCGATACAAC
GGGATCGATGTCCGATGATATTGCCGCTGTAAAATCTTCTGCGACAGAAA
TCATTAACACTTTGGCGGCGAACTCTGCTGACTATCGAGTGGCTCTCGTT
CAGTACAATGACCCATCCGCAGGTGTAGTTCAGGGATTCACGTCGAATAC
GGCCACAATCACGGCAGCGATTAACGGTTTAGGGGCCTCCGGCGGGGGTG
ACACTCCTGAACATGTTTACGGCGGCTTGCAAGCTGCTATAAAGCTCCCA
TGGAGATTGGAAGCAACAAGAACAATAATCACTATGGGGGACGCGCCGCC
AAAAGATCCAGAACCGGGGACTGGGTTGACACAAGCCAAGATTCTTGCTT
TGGCCAACAGTGTGGACATATCTGTCGATACATCACCAACTGTGAGACAA
CTTTTAAGGCTCTTAAGTGCAAGGATGCCGGCTCTTACAACAATCAATGT
TCCGTTGAGTGGATTTCTACCGTTCTTCATGGTGCCCATCGGGGGTTCAT
CCGCTACGCAGTCTTCTTTCTCGGCTCTGGCATCAATGACAAATGGCTCT
GTTTTCCCGGCGGCGTCCGCATCGGATGTGGTAGGGGCTCTTGAAAAGGC
AATTATAGAGGGCACTAGCGGGTCAGCCTCTGGGGCGAAGCCAGTAGAAC
GGCTTGTTTTGACTTCGATTTGCTGGGAAACGGACAATAGACACCGTATG
CGAGTTCGAAATCCAAACGGCTTTGATGTGCCGTACAGCTGGGATGTGTA
TCGCACCAGCAAGAAAGGAGATGGTGTTGCTCAGCCTGGGGATAATTTGT
TCACAATTGAAGGGATTTCGAGGACGTCGACTGTGCGGCTGTTCTGGAAG
GATGAGAACAATGTCCAAAAGCAGACGCAGAAGGCACTTAACAATAAGAA
CTGTTAA

protein sequence of Gcaud8520.t1

>Gcaud8520.t1 ID=Gcaud8520.t1|Name=Gcaud8520.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=469bp
MKLYFRTLIALALSLFSVAYAGEAVGPCGSAFVDALQSGPGTITITLTVS
LKGQFAPPLIQVGAAGYWFNKNTGSVGAISTPGNNPVYFRDIGLYIDQWI
VTPRSGIVEIGVPLIEAIHFGGICFGLFPRATVTVSDSTDPIVLLPETSV
ALQKKSADDLAFVIDTTGSMSDDIAAVKSSATEIINTLAANSADYRVALV
QYNDPSAGVVQGFTSNTATITAAINGLGASGGGDTPEHVYGGLQAAIKLP
WRLEATRTIITMGDAPPKDPEPGTGLTQAKILALANSVDISVDTSPTVRQ
LLRLLSARMPALTTINVPLSGFLPFFMVPIGGSSATQSSFSALASMTNGS
VFPAASASDVVGALEKAIIEGTSGSASGAKPVERLVLTSICWETDNRHRM
RVRNPNGFDVPYSWDVYRTSKKGDGVAQPGDNLFTIEGISRTSTVRLFWK
DENNVQKQTQKALNNKNC*

mRNA from alignment at NODE_243_length_34547_cov_4.802386:13133..14539+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud8520.t1 ID=Gcaud8520.t1|Name=Gcaud8520.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1407bp|location=Sequence derived from alignment at NODE_243_length_34547_cov_4.802386:13133..14539+ (Gracilaria caudata M_176_S67 male)
ATGAAGTTATACTTTCGCACTCTTATTGCATTGGCACTCTCTTTATTCTC
CGTTGCGTATGCTGGAGAGGCTGTTGGTCCATGTGGTTCCGCATTCGTAG
ATGCCTTGCAGAGCGGACCAGGAACAATAACAATCACGCTTACGGTGAGC
TTAAAGGGACAATTTGCTCCGCCACTGATCCAAGTCGGGGCAGCAGGATA
CTGGTTTAACAAGAACACAGGGTCGGTTGGAGCCATATCCACACCGGGAA
ACAATCCAGTTTACTTCCGGGACATCGGGTTGTACATAGATCAGTGGATT
GTAACGCCACGCAGCGGGATTGTTGAGATTGGTGTGCCACTCATCGAGGC
TATTCACTTTGGAGGTATATGTTTCGGGCTCTTTCCACGTGCTACTGTCA
CTGTGAGTGATAGCACGGACCCTATTGTGCTGCTTCCGGAGACGAGTGTT
GCACTTCAGAAGAAGAGTGCCGATGATCTCGCATTCGTGATCGATACAAC
GGGATCGATGTCCGATGATATTGCCGCTGTAAAATCTTCTGCGACAGAAA
TCATTAACACTTTGGCGGCGAACTCTGCTGACTATCGAGTGGCTCTCGTT
CAGTACAATGACCCATCCGCAGGTGTAGTTCAGGGATTCACGTCGAATAC
GGCCACAATCACGGCAGCGATTAACGGTTTAGGGGCCTCCGGCGGGGGTG
ACACTCCTGAACATGTTTACGGCGGCTTGCAAGCTGCTATAAAGCTCCCA
TGGAGATTGGAAGCAACAAGAACAATAATCACTATGGGGGACGCGCCGCC
AAAAGATCCAGAACCGGGGACTGGGTTGACACAAGCCAAGATTCTTGCTT
TGGCCAACAGTGTGGACATATCTGTCGATACATCACCAACTGTGAGACAA
CTTTTAAGGCTCTTAAGTGCAAGGATGCCGGCTCTTACAACAATCAATGT
TCCGTTGAGTGGATTTCTACCGTTCTTCATGGTGCCCATCGGGGGTTCAT
CCGCTACGCAGTCTTCTTTCTCGGCTCTGGCATCAATGACAAATGGCTCT
GTTTTCCCGGCGGCGTCCGCATCGGATGTGGTAGGGGCTCTTGAAAAGGC
AATTATAGAGGGCACTAGCGGGTCAGCCTCTGGGGCGAAGCCAGTAGAAC
GGCTTGTTTTGACTTCGATTTGCTGGGAAACGGACAATAGACACCGTATG
CGAGTTCGAAATCCAAACGGCTTTGATGTGCCGTACAGCTGGGATGTGTA
TCGCACCAGCAAGAAAGGAGATGGTGTTGCTCAGCCTGGGGATAATTTGT
TCACAATTGAAGGGATTTCGAGGACGTCGACTGTGCGGCTGTTCTGGAAG
GATGAGAACAATGTCCAAAAGCAGACGCAGAAGGCACTTAACAATAAGAA
CTGTTAA

Coding sequence (CDS) from alignment at NODE_243_length_34547_cov_4.802386:13133..14539+

>Gcaud8520.t1 ID=Gcaud8520.t1|Name=Gcaud8520.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1407bp|location=Sequence derived from alignment at NODE_243_length_34547_cov_4.802386:13133..14539+ (Gracilaria caudata M_176_S67 male)
ATGAAGTTATACTTTCGCACTCTTATTGCATTGGCACTCTCTTTATTCTC
CGTTGCGTATGCTGGAGAGGCTGTTGGTCCATGTGGTTCCGCATTCGTAG
ATGCCTTGCAGAGCGGACCAGGAACAATAACAATCACGCTTACGGTGAGC
TTAAAGGGACAATTTGCTCCGCCACTGATCCAAGTCGGGGCAGCAGGATA
CTGGTTTAACAAGAACACAGGGTCGGTTGGAGCCATATCCACACCGGGAA
ACAATCCAGTTTACTTCCGGGACATCGGGTTGTACATAGATCAGTGGATT
GTAACGCCACGCAGCGGGATTGTTGAGATTGGTGTGCCACTCATCGAGGC
TATTCACTTTGGAGGTATATGTTTCGGGCTCTTTCCACGTGCTACTGTCA
CTGTGAGTGATAGCACGGACCCTATTGTGCTGCTTCCGGAGACGAGTGTT
GCACTTCAGAAGAAGAGTGCCGATGATCTCGCATTCGTGATCGATACAAC
GGGATCGATGTCCGATGATATTGCCGCTGTAAAATCTTCTGCGACAGAAA
TCATTAACACTTTGGCGGCGAACTCTGCTGACTATCGAGTGGCTCTCGTT
CAGTACAATGACCCATCCGCAGGTGTAGTTCAGGGATTCACGTCGAATAC
GGCCACAATCACGGCAGCGATTAACGGTTTAGGGGCCTCCGGCGGGGGTG
ACACTCCTGAACATGTTTACGGCGGCTTGCAAGCTGCTATAAAGCTCCCA
TGGAGATTGGAAGCAACAAGAACAATAATCACTATGGGGGACGCGCCGCC
AAAAGATCCAGAACCGGGGACTGGGTTGACACAAGCCAAGATTCTTGCTT
TGGCCAACAGTGTGGACATATCTGTCGATACATCACCAACTGTGAGACAA
CTTTTAAGGCTCTTAAGTGCAAGGATGCCGGCTCTTACAACAATCAATGT
TCCGTTGAGTGGATTTCTACCGTTCTTCATGGTGCCCATCGGGGGTTCAT
CCGCTACGCAGTCTTCTTTCTCGGCTCTGGCATCAATGACAAATGGCTCT
GTTTTCCCGGCGGCGTCCGCATCGGATGTGGTAGGGGCTCTTGAAAAGGC
AATTATAGAGGGCACTAGCGGGTCAGCCTCTGGGGCGAAGCCAGTAGAAC
GGCTTGTTTTGACTTCGATTTGCTGGGAAACGGACAATAGACACCGTATG
CGAGTTCGAAATCCAAACGGCTTTGATGTGCCGTACAGCTGGGATGTGTA
TCGCACCAGCAAGAAAGGAGATGGTGTTGCTCAGCCTGGGGATAATTTGT
TCACAATTGAAGGGATTTCGAGGACGTCGACTGTGCGGCTGTTCTGGAAG
GATGAGAACAATGTCCAAAAGCAGACGCAGAAGGCACTTAACAATAAGAA
CTGTTAA