Gcaud852.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud852.t1
Unique Name	Gcaud852.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	710

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_1229_length_12344_cov_4.015506	contig	NODE_1229_length_12344_cov_4.015506:6562..8691 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud852	Gcaud852	Gracilaria caudata M_176_S67 male	gene	NODE_1229_length_12344_cov_4.015506 6562..8691 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud852.t1.start1	Gcaud852.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_1229_length_12344_cov_4.015506 6562..6564 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud852.t1.CDS1	Gcaud852.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_1229_length_12344_cov_4.015506 6562..8691 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud852.t1.exon1	Gcaud852.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_1229_length_12344_cov_4.015506 6562..8691 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud852.t1.stop1	Gcaud852.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_1229_length_12344_cov_4.015506 8689..8691 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud852.t1	Gcaud852.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_1229_length_12344_cov_4.015506 6562..8691 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_1229_length_12344_cov_4.015506:6562..8691+
coding sequence from alignment at NODE_1229_length_12344_cov_4.015506:6562..8691+

mRNA sequence

>Gcaud852.t1 ID=Gcaud852.t1|Name=Gcaud852.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=710bp
MSEQPASASNPLSASTTVASASALTAVVCGAHTELGKFVLRELLRSDAVA
RVHALAELDPRSELRLTPAQAAKLVLYIDSLELLERTLSSNVSQCHLAFC
TLGFKRKPPEMDSYQFHNYNVAIPKRFVQEMFRINADRISILCTKKASSR
MSSSTLQRNSPSPADYARHLQIEQRESLTQSKIPGVSVFKVSLMLTDLKD
QFGVKGTSISPIEQIREKLVFKLGIGASNAVHVRDVAKAMVADALEKLDL
QNEQPDLALIFKSHQTAFDELRPNDIIITANEARAAQRSRYVQMRASRRM
SSNVSGYARYQSGEQVTADDKLFPSDLSQSAVPSALPSNTPSVAQSPAPF
APPAAPSGVKPSLPLDLFPRIEMEGFTAPTARPSENHSPILSAQPMLHAP
PLDSSQLQQEHVSHPPQSSIPLHQPLSEGQQPFSPNQNIFQSPPNIAHGT
KDLFISPKPSTATQYSAQNVIKESSPEGPAPFPAVTSSVDALGRQLSRRL
TIVHNNERLPGASTSPHRLPRRESEKQIRSKTSQTTDKLPRRRSTPVVSR
KGNTSHTSKSPNSKSRSSHSPAQHPFESDAAKSPTSRYSDAHSPRRRPSR
SSQQRHTSGRSVPTASFHSTYNSEAGGRRRSEVDSLRRTKSSQGRRRGSF
PNASAIISQISLIASRILEATDRPSVKRYRQAYDPNYLPRGDPRRQRAKD
QRAMNATMI*

spliced messenger RNA

>Gcaud852.t1 ID=Gcaud852.t1|Name=Gcaud852.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=2130bp|location=Sequence derived from alignment at NODE_1229_length_12344_cov_4.015506:6562..8691+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCGGAACAGCCTGCTTCCGCCAGCAATCCGCTGTCTGCTTCGACAAC
TGTCGCCAGTGCTTCCGCGCTCACTGCCGTTGTGTGTGGCGCGCACACCG
AGCTCGGCAAGTTCGTGCTCCGTGAACTGCTGCGAAGCGACGCCGTTGCT
CGCGTACATGCACTGGCTGAACTTGATCCTCGCTCCGAGCTTCGTCTCAC
CCCAGCTCAGGCGGCAAAGCTTGTGCTGTATATAGACTCGTTGGAGTTGC
TTGAGCGAACCCTTTCATCTAATGTCTCACAATGTCACTTGGCGTTTTGT
ACTCTTGGCTTCAAAAGAAAGCCGCCGGAAATGGATTCATACCAGTTTCA
CAATTACAATGTTGCCATCCCGAAGCGTTTCGTTCAGGAAATGTTTCGTA
TCAACGCTGATCGAATCAGCATCCTTTGCACCAAAAAGGCCTCGTCACGC
ATGTCCAGTTCTACTCTGCAACGGAACTCCCCTTCACCCGCCGATTACGC
TCGTCACCTGCAAATAGAGCAGAGAGAATCTCTCACACAATCTAAAATTC
CGGGCGTGTCTGTCTTCAAGGTGTCTCTCATGTTAACCGATCTCAAGGAT
CAGTTTGGCGTTAAGGGAACTTCTATATCTCCAATCGAACAGATTCGGGA
GAAATTAGTGTTCAAGCTTGGCATTGGTGCTTCCAATGCAGTTCACGTTC
GTGATGTTGCCAAGGCAATGGTTGCAGACGCCCTCGAGAAACTGGACCTA
CAGAACGAACAACCGGATCTCGCCCTTATTTTTAAATCTCACCAAACTGC
CTTTGATGAACTCCGTCCGAACGACATTATCATCACCGCCAATGAGGCGC
GCGCAGCACAACGTTCCCGCTATGTTCAAATGCGTGCTAGCCGTCGTATG
TCATCGAATGTTTCAGGGTATGCACGTTATCAATCCGGTGAACAAGTGAC
AGCGGACGACAAGCTTTTTCCTTCTGATCTGTCGCAATCTGCTGTGCCTT
CTGCCTTACCGTCGAACACACCATCTGTTGCGCAATCACCTGCCCCTTTT
GCACCACCTGCCGCGCCCTCGGGTGTTAAACCTTCACTGCCTCTAGACCT
TTTTCCACGCATTGAAATGGAAGGATTTACGGCGCCTACTGCACGACCGA
GTGAGAATCACTCTCCCATATTGTCAGCTCAACCTATGCTACATGCTCCA
CCACTGGATTCCTCACAGTTGCAACAGGAGCATGTGTCTCATCCTCCACA
ATCTTCTATTCCTTTACATCAACCACTCTCAGAGGGGCAACAGCCATTTT
CACCAAATCAGAACATATTTCAATCACCACCAAACATAGCGCATGGTACT
AAAGATCTATTCATCTCCCCAAAACCCAGCACCGCGACTCAATATTCTGC
TCAAAATGTTATCAAAGAAAGCTCTCCTGAAGGGCCTGCGCCATTTCCTG
CAGTTACTAGCTCAGTGGACGCTCTTGGTCGACAGCTAAGTCGGCGTTTG
ACCATTGTGCACAATAACGAACGACTGCCTGGCGCATCAACTTCGCCTCA
TCGCCTGCCTCGAAGGGAAAGTGAGAAGCAGATACGTTCAAAAACCTCTC
AGACAACGGATAAACTTCCCCGACGGAGATCCACTCCAGTTGTTTCTCGC
AAAGGAAACACCTCACATACTTCCAAGAGTCCCAACAGCAAATCACGTTC
GTCGCACTCTCCGGCGCAACATCCGTTCGAGAGCGACGCCGCCAAATCTC
CTACATCACGATACTCAGACGCTCATTCGCCTCGTCGCAGACCTTCGAGA
TCCTCACAACAGAGACACACATCCGGTCGGTCTGTTCCAACCGCCTCTTT
CCATTCTACTTATAACTCTGAGGCAGGGGGTCGGCGAAGAAGCGAGGTTG
ACAGCCTAAGGCGTACCAAGTCCTCTCAAGGAAGACGTCGAGGTTCATTC
CCTAACGCATCGGCAATCATTTCCCAAATCTCACTTATTGCCAGCAGAAT
CCTCGAGGCCACGGATAGACCGTCAGTCAAGCGATATCGACAAGCATACG
ATCCTAATTACTTGCCAAGAGGTGATCCCAGGCGACAACGAGCGAAAGAT
CAGCGCGCCATGAACGCGACCATGATTTGA

protein sequence of Gcaud852.t1

>Gcaud852.t1 ID=Gcaud852.t1|Name=Gcaud852.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=710bp
MSEQPASASNPLSASTTVASASALTAVVCGAHTELGKFVLRELLRSDAVA
RVHALAELDPRSELRLTPAQAAKLVLYIDSLELLERTLSSNVSQCHLAFC
TLGFKRKPPEMDSYQFHNYNVAIPKRFVQEMFRINADRISILCTKKASSR
MSSSTLQRNSPSPADYARHLQIEQRESLTQSKIPGVSVFKVSLMLTDLKD
QFGVKGTSISPIEQIREKLVFKLGIGASNAVHVRDVAKAMVADALEKLDL
QNEQPDLALIFKSHQTAFDELRPNDIIITANEARAAQRSRYVQMRASRRM
SSNVSGYARYQSGEQVTADDKLFPSDLSQSAVPSALPSNTPSVAQSPAPF
APPAAPSGVKPSLPLDLFPRIEMEGFTAPTARPSENHSPILSAQPMLHAP
PLDSSQLQQEHVSHPPQSSIPLHQPLSEGQQPFSPNQNIFQSPPNIAHGT
KDLFISPKPSTATQYSAQNVIKESSPEGPAPFPAVTSSVDALGRQLSRRL
TIVHNNERLPGASTSPHRLPRRESEKQIRSKTSQTTDKLPRRRSTPVVSR
KGNTSHTSKSPNSKSRSSHSPAQHPFESDAAKSPTSRYSDAHSPRRRPSR
SSQQRHTSGRSVPTASFHSTYNSEAGGRRRSEVDSLRRTKSSQGRRRGSF
PNASAIISQISLIASRILEATDRPSVKRYRQAYDPNYLPRGDPRRQRAKD
QRAMNATMI*

mRNA from alignment at NODE_1229_length_12344_cov_4.015506:6562..8691+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud852.t1 ID=Gcaud852.t1|Name=Gcaud852.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=2130bp|location=Sequence derived from alignment at NODE_1229_length_12344_cov_4.015506:6562..8691+ (Gracilaria caudata M_176_S67 male)
ATGTCGGAACAGCCTGCTTCCGCCAGCAATCCGCTGTCTGCTTCGACAAC
TGTCGCCAGTGCTTCCGCGCTCACTGCCGTTGTGTGTGGCGCGCACACCG
AGCTCGGCAAGTTCGTGCTCCGTGAACTGCTGCGAAGCGACGCCGTTGCT
CGCGTACATGCACTGGCTGAACTTGATCCTCGCTCCGAGCTTCGTCTCAC
CCCAGCTCAGGCGGCAAAGCTTGTGCTGTATATAGACTCGTTGGAGTTGC
TTGAGCGAACCCTTTCATCTAATGTCTCACAATGTCACTTGGCGTTTTGT
ACTCTTGGCTTCAAAAGAAAGCCGCCGGAAATGGATTCATACCAGTTTCA
CAATTACAATGTTGCCATCCCGAAGCGTTTCGTTCAGGAAATGTTTCGTA
TCAACGCTGATCGAATCAGCATCCTTTGCACCAAAAAGGCCTCGTCACGC
ATGTCCAGTTCTACTCTGCAACGGAACTCCCCTTCACCCGCCGATTACGC
TCGTCACCTGCAAATAGAGCAGAGAGAATCTCTCACACAATCTAAAATTC
CGGGCGTGTCTGTCTTCAAGGTGTCTCTCATGTTAACCGATCTCAAGGAT
CAGTTTGGCGTTAAGGGAACTTCTATATCTCCAATCGAACAGATTCGGGA
GAAATTAGTGTTCAAGCTTGGCATTGGTGCTTCCAATGCAGTTCACGTTC
GTGATGTTGCCAAGGCAATGGTTGCAGACGCCCTCGAGAAACTGGACCTA
CAGAACGAACAACCGGATCTCGCCCTTATTTTTAAATCTCACCAAACTGC
CTTTGATGAACTCCGTCCGAACGACATTATCATCACCGCCAATGAGGCGC
GCGCAGCACAACGTTCCCGCTATGTTCAAATGCGTGCTAGCCGTCGTATG
TCATCGAATGTTTCAGGGTATGCACGTTATCAATCCGGTGAACAAGTGAC
AGCGGACGACAAGCTTTTTCCTTCTGATCTGTCGCAATCTGCTGTGCCTT
CTGCCTTACCGTCGAACACACCATCTGTTGCGCAATCACCTGCCCCTTTT
GCACCACCTGCCGCGCCCTCGGGTGTTAAACCTTCACTGCCTCTAGACCT
TTTTCCACGCATTGAAATGGAAGGATTTACGGCGCCTACTGCACGACCGA
GTGAGAATCACTCTCCCATATTGTCAGCTCAACCTATGCTACATGCTCCA
CCACTGGATTCCTCACAGTTGCAACAGGAGCATGTGTCTCATCCTCCACA
ATCTTCTATTCCTTTACATCAACCACTCTCAGAGGGGCAACAGCCATTTT
CACCAAATCAGAACATATTTCAATCACCACCAAACATAGCGCATGGTACT
AAAGATCTATTCATCTCCCCAAAACCCAGCACCGCGACTCAATATTCTGC
TCAAAATGTTATCAAAGAAAGCTCTCCTGAAGGGCCTGCGCCATTTCCTG
CAGTTACTAGCTCAGTGGACGCTCTTGGTCGACAGCTAAGTCGGCGTTTG
ACCATTGTGCACAATAACGAACGACTGCCTGGCGCATCAACTTCGCCTCA
TCGCCTGCCTCGAAGGGAAAGTGAGAAGCAGATACGTTCAAAAACCTCTC
AGACAACGGATAAACTTCCCCGACGGAGATCCACTCCAGTTGTTTCTCGC
AAAGGAAACACCTCACATACTTCCAAGAGTCCCAACAGCAAATCACGTTC
GTCGCACTCTCCGGCGCAACATCCGTTCGAGAGCGACGCCGCCAAATCTC
CTACATCACGATACTCAGACGCTCATTCGCCTCGTCGCAGACCTTCGAGA
TCCTCACAACAGAGACACACATCCGGTCGGTCTGTTCCAACCGCCTCTTT
CCATTCTACTTATAACTCTGAGGCAGGGGGTCGGCGAAGAAGCGAGGTTG
ACAGCCTAAGGCGTACCAAGTCCTCTCAAGGAAGACGTCGAGGTTCATTC
CCTAACGCATCGGCAATCATTTCCCAAATCTCACTTATTGCCAGCAGAAT
CCTCGAGGCCACGGATAGACCGTCAGTCAAGCGATATCGACAAGCATACG
ATCCTAATTACTTGCCAAGAGGTGATCCCAGGCGACAACGAGCGAAAGAT
CAGCGCGCCATGAACGCGACCATGATTTGA

Coding sequence (CDS) from alignment at NODE_1229_length_12344_cov_4.015506:6562..8691+

>Gcaud852.t1 ID=Gcaud852.t1|Name=Gcaud852.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=2130bp|location=Sequence derived from alignment at NODE_1229_length_12344_cov_4.015506:6562..8691+ (Gracilaria caudata M_176_S67 male)
ATGTCGGAACAGCCTGCTTCCGCCAGCAATCCGCTGTCTGCTTCGACAAC
TGTCGCCAGTGCTTCCGCGCTCACTGCCGTTGTGTGTGGCGCGCACACCG
AGCTCGGCAAGTTCGTGCTCCGTGAACTGCTGCGAAGCGACGCCGTTGCT
CGCGTACATGCACTGGCTGAACTTGATCCTCGCTCCGAGCTTCGTCTCAC
CCCAGCTCAGGCGGCAAAGCTTGTGCTGTATATAGACTCGTTGGAGTTGC
TTGAGCGAACCCTTTCATCTAATGTCTCACAATGTCACTTGGCGTTTTGT
ACTCTTGGCTTCAAAAGAAAGCCGCCGGAAATGGATTCATACCAGTTTCA
CAATTACAATGTTGCCATCCCGAAGCGTTTCGTTCAGGAAATGTTTCGTA
TCAACGCTGATCGAATCAGCATCCTTTGCACCAAAAAGGCCTCGTCACGC
ATGTCCAGTTCTACTCTGCAACGGAACTCCCCTTCACCCGCCGATTACGC
TCGTCACCTGCAAATAGAGCAGAGAGAATCTCTCACACAATCTAAAATTC
CGGGCGTGTCTGTCTTCAAGGTGTCTCTCATGTTAACCGATCTCAAGGAT
CAGTTTGGCGTTAAGGGAACTTCTATATCTCCAATCGAACAGATTCGGGA
GAAATTAGTGTTCAAGCTTGGCATTGGTGCTTCCAATGCAGTTCACGTTC
GTGATGTTGCCAAGGCAATGGTTGCAGACGCCCTCGAGAAACTGGACCTA
CAGAACGAACAACCGGATCTCGCCCTTATTTTTAAATCTCACCAAACTGC
CTTTGATGAACTCCGTCCGAACGACATTATCATCACCGCCAATGAGGCGC
GCGCAGCACAACGTTCCCGCTATGTTCAAATGCGTGCTAGCCGTCGTATG
TCATCGAATGTTTCAGGGTATGCACGTTATCAATCCGGTGAACAAGTGAC
AGCGGACGACAAGCTTTTTCCTTCTGATCTGTCGCAATCTGCTGTGCCTT
CTGCCTTACCGTCGAACACACCATCTGTTGCGCAATCACCTGCCCCTTTT
GCACCACCTGCCGCGCCCTCGGGTGTTAAACCTTCACTGCCTCTAGACCT
TTTTCCACGCATTGAAATGGAAGGATTTACGGCGCCTACTGCACGACCGA
GTGAGAATCACTCTCCCATATTGTCAGCTCAACCTATGCTACATGCTCCA
CCACTGGATTCCTCACAGTTGCAACAGGAGCATGTGTCTCATCCTCCACA
ATCTTCTATTCCTTTACATCAACCACTCTCAGAGGGGCAACAGCCATTTT
CACCAAATCAGAACATATTTCAATCACCACCAAACATAGCGCATGGTACT
AAAGATCTATTCATCTCCCCAAAACCCAGCACCGCGACTCAATATTCTGC
TCAAAATGTTATCAAAGAAAGCTCTCCTGAAGGGCCTGCGCCATTTCCTG
CAGTTACTAGCTCAGTGGACGCTCTTGGTCGACAGCTAAGTCGGCGTTTG
ACCATTGTGCACAATAACGAACGACTGCCTGGCGCATCAACTTCGCCTCA
TCGCCTGCCTCGAAGGGAAAGTGAGAAGCAGATACGTTCAAAAACCTCTC
AGACAACGGATAAACTTCCCCGACGGAGATCCACTCCAGTTGTTTCTCGC
AAAGGAAACACCTCACATACTTCCAAGAGTCCCAACAGCAAATCACGTTC
GTCGCACTCTCCGGCGCAACATCCGTTCGAGAGCGACGCCGCCAAATCTC
CTACATCACGATACTCAGACGCTCATTCGCCTCGTCGCAGACCTTCGAGA
TCCTCACAACAGAGACACACATCCGGTCGGTCTGTTCCAACCGCCTCTTT
CCATTCTACTTATAACTCTGAGGCAGGGGGTCGGCGAAGAAGCGAGGTTG
ACAGCCTAAGGCGTACCAAGTCCTCTCAAGGAAGACGTCGAGGTTCATTC
CCTAACGCATCGGCAATCATTTCCCAAATCTCACTTATTGCCAGCAGAAT
CCTCGAGGCCACGGATAGACCGTCAGTCAAGCGATATCGACAAGCATACG
ATCCTAATTACTTGCCAAGAGGTGATCCCAGGCGACAACGAGCGAAAGAT
CAGCGCGCCATGAACGCGACCATGATTTGA