Gcaud8519.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud8519.t1
Unique Name	Gcaud8519.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	488

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_243_length_34547_cov_4.802386	contig	NODE_243_length_34547_cov_4.802386:10512..11975 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	130081.XP_005706126.1
PFAMs	Amino_oxidase
Max annot lvl	2759\|Eukaryota
KEGG rclass	RC00053,RC00225
KEGG ko	ko:K00308,ko:K12259
KEGG Reaction	R03899,R09074,R09076
KEGG Pathway	ko00330,ko00410,ko04146,map00330,map00410,map04146
Evalue	1.21e-52
EggNOG OGs	KOG0685@1\|root,KOG0685@2759\|Eukaryota
EC	1.5.3.13,1.5.3.16
Description	positive regulation of spermidine biosynthetic process
COG category	T
BRITE	ko00000,ko00001,ko01000

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud8519	Gcaud8519	Gracilaria caudata M_176_S67 male	gene	NODE_243_length_34547_cov_4.802386 10512..11975 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud8519.t1.start1	Gcaud8519.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_243_length_34547_cov_4.802386 10512..10514 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud8519.t1.CDS1	Gcaud8519.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_243_length_34547_cov_4.802386 10512..11975 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud8519.t1.exon1	Gcaud8519.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_243_length_34547_cov_4.802386 10512..11975 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud8519.t1.stop1	Gcaud8519.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_243_length_34547_cov_4.802386 11973..11975 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud8519.t1	Gcaud8519.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_243_length_34547_cov_4.802386 10512..11975 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_243_length_34547_cov_4.802386:10512..11975+
coding sequence from alignment at NODE_243_length_34547_cov_4.802386:10512..11975+

mRNA sequence

>Gcaud8519.t1 ID=Gcaud8519.t1|Name=Gcaud8519.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=488bp
MPPCDAPRVAIIGAGLAGLSAAVRLLQRHDIAATVFEAQTRAGGRVHSVT
VQPSPHRERVVLDLGATWFHGTQGNAAHDAAVRTGALRESPIDDDPSKQW
DDDYGVLLFSAPAIVVTDGMTRVVTSESTLPVVRAYAASLGKVENYGESH
GHKQHVDESVMQFLRQSAGFDDMTRFDRAVFKARDALEACVNGCDSSTAD
LSAKRLPDYVTLKGDNVPMQGGMCAVVESFVELLEQSQIELSRRVVLVDY
GNERGASVRVAFDDGTAWEGHCVLWTPAVNVTNVAVEQNLFEPQLPEDKI
AALAERVQGVVEKAFVLLSAQLENVPSDCSMPVIWEDIETVQQPHLWWTN
VFSVLYSSKHCMVSFWLTGDAAKHVCSLSNDLRLEQIKALLNILYSQPVE
IEKVICSEWGSNPSTLGSYSYPKVGCSEHAVRTLGRPLPSTDKPLLCFAG
EATHQSFYSTMHGAIESGYREADRIAAFMKQLSQEVS*

spliced messenger RNA

>Gcaud8519.t1 ID=Gcaud8519.t1|Name=Gcaud8519.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1464bp|location=Sequence derived from alignment at NODE_243_length_34547_cov_4.802386:10512..11975+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCCTCCTTGCGATGCGCCGCGCGTTGCCATTATCGGCGCCGGACTGGC
CGGACTCTCCGCTGCTGTACGCCTGCTCCAGCGTCACGACATCGCCGCCA
CCGTCTTCGAAGCTCAGACACGCGCCGGGGGCCGTGTGCATTCCGTGACT
GTGCAGCCGTCGCCCCACCGCGAGCGCGTGGTGCTCGACTTGGGCGCCAC
TTGGTTCCACGGCACGCAAGGCAACGCCGCGCACGACGCTGCTGTGCGTA
CCGGTGCGCTGCGCGAATCTCCCATTGATGACGACCCGAGCAAGCAATGG
GACGACGATTACGGAGTTTTGCTGTTCTCGGCGCCGGCCATCGTGGTAAC
AGATGGCATGACTCGCGTTGTAACCTCGGAGAGCACACTTCCCGTCGTCA
GGGCGTACGCCGCGTCGTTGGGGAAGGTGGAGAACTATGGAGAGAGTCAT
GGACACAAGCAACACGTTGATGAAAGCGTCATGCAATTCCTGAGACAATC
GGCAGGCTTTGACGATATGACGCGCTTTGATAGAGCTGTGTTCAAAGCTC
GTGATGCATTAGAGGCTTGCGTGAACGGCTGCGATTCTTCCACTGCCGAC
TTGTCGGCGAAACGCCTTCCAGATTATGTAACGTTGAAGGGCGATAACGT
TCCCATGCAAGGAGGAATGTGCGCTGTCGTCGAATCATTCGTTGAGCTTT
TGGAGCAGTCACAGATTGAGCTCAGTCGAAGGGTTGTTCTAGTGGATTAC
GGCAATGAACGGGGTGCTTCTGTGCGCGTTGCTTTCGATGATGGAACCGC
TTGGGAGGGCCATTGTGTGTTGTGGACTCCTGCAGTTAACGTTACGAACG
TTGCAGTTGAACAAAACCTGTTTGAACCGCAGCTACCTGAAGATAAAATT
GCCGCGCTGGCGGAGAGAGTTCAAGGAGTTGTGGAGAAGGCATTTGTCTT
GTTGAGCGCGCAGTTAGAGAACGTTCCGTCCGATTGCAGCATGCCAGTAA
TCTGGGAGGACATCGAAACCGTGCAGCAGCCTCACCTTTGGTGGACCAAT
GTCTTCTCTGTGTTGTACAGCTCGAAGCATTGTATGGTGTCCTTTTGGCT
TACCGGCGACGCCGCGAAGCATGTGTGTTCCTTGTCGAATGATCTGCGGT
TGGAACAGATTAAGGCGCTGCTGAATATTCTCTACTCGCAGCCTGTTGAG
ATCGAGAAGGTGATCTGCTCAGAGTGGGGATCGAATCCATCTACGTTAGG
AAGCTATTCGTATCCGAAAGTTGGGTGTTCGGAGCATGCCGTGCGAACAC
TGGGTAGGCCGTTACCATCAACTGACAAACCGCTTCTCTGCTTTGCGGGA
GAAGCGACACATCAAAGCTTCTATTCCACGATGCATGGAGCGATTGAGTC
CGGATATCGGGAGGCGGATCGGATTGCTGCCTTTATGAAACAACTCTCTC
AAGAGGTCTCATAG

protein sequence of Gcaud8519.t1

>Gcaud8519.t1 ID=Gcaud8519.t1|Name=Gcaud8519.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=488bp
MPPCDAPRVAIIGAGLAGLSAAVRLLQRHDIAATVFEAQTRAGGRVHSVT
VQPSPHRERVVLDLGATWFHGTQGNAAHDAAVRTGALRESPIDDDPSKQW
DDDYGVLLFSAPAIVVTDGMTRVVTSESTLPVVRAYAASLGKVENYGESH
GHKQHVDESVMQFLRQSAGFDDMTRFDRAVFKARDALEACVNGCDSSTAD
LSAKRLPDYVTLKGDNVPMQGGMCAVVESFVELLEQSQIELSRRVVLVDY
GNERGASVRVAFDDGTAWEGHCVLWTPAVNVTNVAVEQNLFEPQLPEDKI
AALAERVQGVVEKAFVLLSAQLENVPSDCSMPVIWEDIETVQQPHLWWTN
VFSVLYSSKHCMVSFWLTGDAAKHVCSLSNDLRLEQIKALLNILYSQPVE
IEKVICSEWGSNPSTLGSYSYPKVGCSEHAVRTLGRPLPSTDKPLLCFAG
EATHQSFYSTMHGAIESGYREADRIAAFMKQLSQEVS*

mRNA from alignment at NODE_243_length_34547_cov_4.802386:10512..11975+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud8519.t1 ID=Gcaud8519.t1|Name=Gcaud8519.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1464bp|location=Sequence derived from alignment at NODE_243_length_34547_cov_4.802386:10512..11975+ (Gracilaria caudata M_176_S67 male)
ATGCCTCCTTGCGATGCGCCGCGCGTTGCCATTATCGGCGCCGGACTGGC
CGGACTCTCCGCTGCTGTACGCCTGCTCCAGCGTCACGACATCGCCGCCA
CCGTCTTCGAAGCTCAGACACGCGCCGGGGGCCGTGTGCATTCCGTGACT
GTGCAGCCGTCGCCCCACCGCGAGCGCGTGGTGCTCGACTTGGGCGCCAC
TTGGTTCCACGGCACGCAAGGCAACGCCGCGCACGACGCTGCTGTGCGTA
CCGGTGCGCTGCGCGAATCTCCCATTGATGACGACCCGAGCAAGCAATGG
GACGACGATTACGGAGTTTTGCTGTTCTCGGCGCCGGCCATCGTGGTAAC
AGATGGCATGACTCGCGTTGTAACCTCGGAGAGCACACTTCCCGTCGTCA
GGGCGTACGCCGCGTCGTTGGGGAAGGTGGAGAACTATGGAGAGAGTCAT
GGACACAAGCAACACGTTGATGAAAGCGTCATGCAATTCCTGAGACAATC
GGCAGGCTTTGACGATATGACGCGCTTTGATAGAGCTGTGTTCAAAGCTC
GTGATGCATTAGAGGCTTGCGTGAACGGCTGCGATTCTTCCACTGCCGAC
TTGTCGGCGAAACGCCTTCCAGATTATGTAACGTTGAAGGGCGATAACGT
TCCCATGCAAGGAGGAATGTGCGCTGTCGTCGAATCATTCGTTGAGCTTT
TGGAGCAGTCACAGATTGAGCTCAGTCGAAGGGTTGTTCTAGTGGATTAC
GGCAATGAACGGGGTGCTTCTGTGCGCGTTGCTTTCGATGATGGAACCGC
TTGGGAGGGCCATTGTGTGTTGTGGACTCCTGCAGTTAACGTTACGAACG
TTGCAGTTGAACAAAACCTGTTTGAACCGCAGCTACCTGAAGATAAAATT
GCCGCGCTGGCGGAGAGAGTTCAAGGAGTTGTGGAGAAGGCATTTGTCTT
GTTGAGCGCGCAGTTAGAGAACGTTCCGTCCGATTGCAGCATGCCAGTAA
TCTGGGAGGACATCGAAACCGTGCAGCAGCCTCACCTTTGGTGGACCAAT
GTCTTCTCTGTGTTGTACAGCTCGAAGCATTGTATGGTGTCCTTTTGGCT
TACCGGCGACGCCGCGAAGCATGTGTGTTCCTTGTCGAATGATCTGCGGT
TGGAACAGATTAAGGCGCTGCTGAATATTCTCTACTCGCAGCCTGTTGAG
ATCGAGAAGGTGATCTGCTCAGAGTGGGGATCGAATCCATCTACGTTAGG
AAGCTATTCGTATCCGAAAGTTGGGTGTTCGGAGCATGCCGTGCGAACAC
TGGGTAGGCCGTTACCATCAACTGACAAACCGCTTCTCTGCTTTGCGGGA
GAAGCGACACATCAAAGCTTCTATTCCACGATGCATGGAGCGATTGAGTC
CGGATATCGGGAGGCGGATCGGATTGCTGCCTTTATGAAACAACTCTCTC
AAGAGGTCTCATAG

Coding sequence (CDS) from alignment at NODE_243_length_34547_cov_4.802386:10512..11975+

>Gcaud8519.t1 ID=Gcaud8519.t1|Name=Gcaud8519.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1464bp|location=Sequence derived from alignment at NODE_243_length_34547_cov_4.802386:10512..11975+ (Gracilaria caudata M_176_S67 male)
ATGCCTCCTTGCGATGCGCCGCGCGTTGCCATTATCGGCGCCGGACTGGC
CGGACTCTCCGCTGCTGTACGCCTGCTCCAGCGTCACGACATCGCCGCCA
CCGTCTTCGAAGCTCAGACACGCGCCGGGGGCCGTGTGCATTCCGTGACT
GTGCAGCCGTCGCCCCACCGCGAGCGCGTGGTGCTCGACTTGGGCGCCAC
TTGGTTCCACGGCACGCAAGGCAACGCCGCGCACGACGCTGCTGTGCGTA
CCGGTGCGCTGCGCGAATCTCCCATTGATGACGACCCGAGCAAGCAATGG
GACGACGATTACGGAGTTTTGCTGTTCTCGGCGCCGGCCATCGTGGTAAC
AGATGGCATGACTCGCGTTGTAACCTCGGAGAGCACACTTCCCGTCGTCA
GGGCGTACGCCGCGTCGTTGGGGAAGGTGGAGAACTATGGAGAGAGTCAT
GGACACAAGCAACACGTTGATGAAAGCGTCATGCAATTCCTGAGACAATC
GGCAGGCTTTGACGATATGACGCGCTTTGATAGAGCTGTGTTCAAAGCTC
GTGATGCATTAGAGGCTTGCGTGAACGGCTGCGATTCTTCCACTGCCGAC
TTGTCGGCGAAACGCCTTCCAGATTATGTAACGTTGAAGGGCGATAACGT
TCCCATGCAAGGAGGAATGTGCGCTGTCGTCGAATCATTCGTTGAGCTTT
TGGAGCAGTCACAGATTGAGCTCAGTCGAAGGGTTGTTCTAGTGGATTAC
GGCAATGAACGGGGTGCTTCTGTGCGCGTTGCTTTCGATGATGGAACCGC
TTGGGAGGGCCATTGTGTGTTGTGGACTCCTGCAGTTAACGTTACGAACG
TTGCAGTTGAACAAAACCTGTTTGAACCGCAGCTACCTGAAGATAAAATT
GCCGCGCTGGCGGAGAGAGTTCAAGGAGTTGTGGAGAAGGCATTTGTCTT
GTTGAGCGCGCAGTTAGAGAACGTTCCGTCCGATTGCAGCATGCCAGTAA
TCTGGGAGGACATCGAAACCGTGCAGCAGCCTCACCTTTGGTGGACCAAT
GTCTTCTCTGTGTTGTACAGCTCGAAGCATTGTATGGTGTCCTTTTGGCT
TACCGGCGACGCCGCGAAGCATGTGTGTTCCTTGTCGAATGATCTGCGGT
TGGAACAGATTAAGGCGCTGCTGAATATTCTCTACTCGCAGCCTGTTGAG
ATCGAGAAGGTGATCTGCTCAGAGTGGGGATCGAATCCATCTACGTTAGG
AAGCTATTCGTATCCGAAAGTTGGGTGTTCGGAGCATGCCGTGCGAACAC
TGGGTAGGCCGTTACCATCAACTGACAAACCGCTTCTCTGCTTTGCGGGA
GAAGCGACACATCAAAGCTTCTATTCCACGATGCATGGAGCGATTGAGTC
CGGATATCGGGAGGCGGATCGGATTGCTGCCTTTATGAAACAACTCTCTC
AAGAGGTCTCATAG