Gcaud8516.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud8516.t1
Unique Name	Gcaud8516.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	356

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_243_length_34547_cov_4.802386	contig	NODE_243_length_34547_cov_4.802386:513..1580 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	6500.XP_005103108.1
PFAMs	EGF,Sushi,VWA
Max annot lvl	33208\|Metazoa
KEGG ko	ko:K06238
KEGG Pathway	ko04151,ko04510,ko04512,ko04974,ko05165,map04151,map04510,map04512,map04974,map05165
Evalue	6.67e-08
EggNOG OGs	KOG1217@1\|root,KOG3544@1\|root,KOG1217@2759\|Eukaryota,KOG3544@2759\|Eukaryota,38DGH@33154\|Opisthokonta,3BA28@33208\|Metazoa
Description	collagen
COG category	W
BRITE	ko00000,ko00001,ko00536,ko04147,ko04516

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud8516	Gcaud8516	Gracilaria caudata M_176_S67 male	gene	NODE_243_length_34547_cov_4.802386 513..1580 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud8516.t1.stop1	Gcaud8516.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_243_length_34547_cov_4.802386 513..515 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud8516.t1.CDS1	Gcaud8516.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_243_length_34547_cov_4.802386 513..1580 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud8516.t1.exon1	Gcaud8516.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_243_length_34547_cov_4.802386 513..1580 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud8516.t1.start1	Gcaud8516.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_243_length_34547_cov_4.802386 1578..1580 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud8516.t1	Gcaud8516.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_243_length_34547_cov_4.802386 513..1580 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_243_length_34547_cov_4.802386:513..1580-
coding sequence from alignment at NODE_243_length_34547_cov_4.802386:513..1580-

mRNA sequence

>Gcaud8516.t1 ID=Gcaud8516.t1|Name=Gcaud8516.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=356bp
MVFRFFTFAAVAAFSVLGAQATPTPQQCNINNVCYVIDQSASIGSTEYQQ
EQNFVVRISNEIETIAVNDPFNSAVAFSGNAQTIQDPTQDLTAFQASVGG
NRFFNGGTVISTGLNQCRTLLEGAQGNRVIALITDGQTAFSDIPASNQAA
TDAKAAEIDIVTVGIGSHVSQDFLMDLASDPSLFINANFDDLDQKIPEVV
QAICDAVDPPTPCEIAFEECEFTFSEQRGLTAFDISGEPDTAFTTRVVPK
DVSYGLGTLNTNNIVPEFIDDSDARPITEFGSQRFTPTHFKPFWIMQERG
SGIGHQTFQGDQAQVARDKCIRIFFTSFQEIRENRVVNRNNVPRSANKCV
VFRTM*

spliced messenger RNA

>Gcaud8516.t1 ID=Gcaud8516.t1|Name=Gcaud8516.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1068bp|location=Sequence derived from alignment at NODE_243_length_34547_cov_4.802386:513..1580- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGTCTTCCGATTCTTTACATTTGCCGCTGTGGCGGCCTTTTCGGTTTT
GGGCGCGCAAGCGACACCCACTCCTCAGCAGTGTAACATTAACAACGTCT
GCTACGTTATCGATCAGTCCGCTTCTATCGGTAGCACGGAATATCAACAG
GAACAGAATTTCGTTGTCAGGATCTCGAATGAAATTGAGACGATCGCCGT
GAATGACCCATTTAACTCAGCGGTTGCGTTCTCCGGCAACGCCCAAACTA
TTCAGGATCCGACCCAAGACCTGACCGCATTCCAAGCGTCAGTGGGAGGC
AATCGTTTTTTCAACGGTGGAACGGTCATCTCGACTGGCTTGAACCAATG
CAGAACTCTGCTTGAAGGCGCCCAGGGCAACAGGGTTATCGCACTCATTA
CAGATGGACAGACAGCATTCTCAGATATCCCGGCTTCGAATCAGGCCGCC
ACTGATGCGAAGGCGGCTGAGATTGATATAGTCACAGTGGGCATTGGAAG
TCATGTAAGCCAGGACTTCTTGATGGATCTTGCGAGCGACCCATCGCTGT
TCATCAACGCCAATTTCGATGACTTAGACCAAAAAATTCCGGAGGTTGTC
CAAGCTATCTGTGATGCTGTTGACCCGCCGACTCCCTGCGAAATTGCATT
TGAGGAATGTGAGTTCACGTTCAGTGAACAGAGAGGCTTGACGGCCTTCG
ACATCTCCGGTGAACCGGACACTGCCTTCACTACTCGTGTGGTTCCAAAG
GACGTGAGCTATGGGCTTGGAACGTTGAACACCAACAATATCGTTCCAGA
GTTCATCGACGATTCTGATGCGAGACCCATCACTGAGTTCGGATCGCAGC
GATTCACTCCGACGCACTTCAAGCCCTTCTGGATCATGCAGGAACGCGGA
TCTGGAATTGGACATCAAACTTTCCAAGGTGACCAGGCCCAGGTGGCAAG
GGACAAGTGCATCCGAATCTTTTTCACCTCATTCCAGGAAATTAGGGAGA
ACCGTGTGGTGAACCGAAACAATGTGCCGCGCTCTGCCAACAAATGCGTT
GTTTTCCGCACTATGTAG

protein sequence of Gcaud8516.t1

>Gcaud8516.t1 ID=Gcaud8516.t1|Name=Gcaud8516.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=356bp
MVFRFFTFAAVAAFSVLGAQATPTPQQCNINNVCYVIDQSASIGSTEYQQ
EQNFVVRISNEIETIAVNDPFNSAVAFSGNAQTIQDPTQDLTAFQASVGG
NRFFNGGTVISTGLNQCRTLLEGAQGNRVIALITDGQTAFSDIPASNQAA
TDAKAAEIDIVTVGIGSHVSQDFLMDLASDPSLFINANFDDLDQKIPEVV
QAICDAVDPPTPCEIAFEECEFTFSEQRGLTAFDISGEPDTAFTTRVVPK
DVSYGLGTLNTNNIVPEFIDDSDARPITEFGSQRFTPTHFKPFWIMQERG
SGIGHQTFQGDQAQVARDKCIRIFFTSFQEIRENRVVNRNNVPRSANKCV
VFRTM*

mRNA from alignment at NODE_243_length_34547_cov_4.802386:513..1580-

Legend: polypeptideCDSexonstart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud8516.t1 ID=Gcaud8516.t1|Name=Gcaud8516.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1068bp|location=Sequence derived from alignment at NODE_243_length_34547_cov_4.802386:513..1580- (Gracilaria caudata M_176_S67 male)
ATGGTCTTCCGATTCTTTACATTTGCCGCTGTGGCGGCCTTTTCGGTTTT
GGGCGCGCAAGCGACACCCACTCCTCAGCAGTGTAACATTAACAACGTCT
GCTACGTTATCGATCAGTCCGCTTCTATCGGTAGCACGGAATATCAACAG
GAACAGAATTTCGTTGTCAGGATCTCGAATGAAATTGAGACGATCGCCGT
GAATGACCCATTTAACTCAGCGGTTGCGTTCTCCGGCAACGCCCAAACTA
TTCAGGATCCGACCCAAGACCTGACCGCATTCCAAGCGTCAGTGGGAGGC
AATCGTTTTTTCAACGGTGGAACGGTCATCTCGACTGGCTTGAACCAATG
CAGAACTCTGCTTGAAGGCGCCCAGGGCAACAGGGTTATCGCACTCATTA
CAGATGGACAGACAGCATTCTCAGATATCCCGGCTTCGAATCAGGCCGCC
ACTGATGCGAAGGCGGCTGAGATTGATATAGTCACAGTGGGCATTGGAAG
TCATGTAAGCCAGGACTTCTTGATGGATCTTGCGAGCGACCCATCGCTGT
TCATCAACGCCAATTTCGATGACTTAGACCAAAAAATTCCGGAGGTTGTC
CAAGCTATCTGTGATGCTGTTGACCCGCCGACTCCCTGCGAAATTGCATT
TGAGGAATGTGAGTTCACGTTCAGTGAACAGAGAGGCTTGACGGCCTTCG
ACATCTCCGGTGAACCGGACACTGCCTTCACTACTCGTGTGGTTCCAAAG
GACGTGAGCTATGGGCTTGGAACGTTGAACACCAACAATATCGTTCCAGA
GTTCATCGACGATTCTGATGCGAGACCCATCACTGAGTTCGGATCGCAGC
GATTCACTCCGACGCACTTCAAGCCCTTCTGGATCATGCAGGAACGCGGA
TCTGGAATTGGACATCAAACTTTCCAAGGTGACCAGGCCCAGGTGGCAAG
GGACAAGTGCATCCGAATCTTTTTCACCTCATTCCAGGAAATTAGGGAGA
ACCGTGTGGTGAACCGAAACAATGTGCCGCGCTCTGCCAACAAATGCGTT
GTTTTCCGCACTATGTAG

Coding sequence (CDS) from alignment at NODE_243_length_34547_cov_4.802386:513..1580-

>Gcaud8516.t1 ID=Gcaud8516.t1|Name=Gcaud8516.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1068bp|location=Sequence derived from alignment at NODE_243_length_34547_cov_4.802386:513..1580- (Gracilaria caudata M_176_S67 male)
ATGGTCTTCCGATTCTTTACATTTGCCGCTGTGGCGGCCTTTTCGGTTTT
GGGCGCGCAAGCGACACCCACTCCTCAGCAGTGTAACATTAACAACGTCT
GCTACGTTATCGATCAGTCCGCTTCTATCGGTAGCACGGAATATCAACAG
GAACAGAATTTCGTTGTCAGGATCTCGAATGAAATTGAGACGATCGCCGT
GAATGACCCATTTAACTCAGCGGTTGCGTTCTCCGGCAACGCCCAAACTA
TTCAGGATCCGACCCAAGACCTGACCGCATTCCAAGCGTCAGTGGGAGGC
AATCGTTTTTTCAACGGTGGAACGGTCATCTCGACTGGCTTGAACCAATG
CAGAACTCTGCTTGAAGGCGCCCAGGGCAACAGGGTTATCGCACTCATTA
CAGATGGACAGACAGCATTCTCAGATATCCCGGCTTCGAATCAGGCCGCC
ACTGATGCGAAGGCGGCTGAGATTGATATAGTCACAGTGGGCATTGGAAG
TCATGTAAGCCAGGACTTCTTGATGGATCTTGCGAGCGACCCATCGCTGT
TCATCAACGCCAATTTCGATGACTTAGACCAAAAAATTCCGGAGGTTGTC
CAAGCTATCTGTGATGCTGTTGACCCGCCGACTCCCTGCGAAATTGCATT
TGAGGAATGTGAGTTCACGTTCAGTGAACAGAGAGGCTTGACGGCCTTCG
ACATCTCCGGTGAACCGGACACTGCCTTCACTACTCGTGTGGTTCCAAAG
GACGTGAGCTATGGGCTTGGAACGTTGAACACCAACAATATCGTTCCAGA
GTTCATCGACGATTCTGATGCGAGACCCATCACTGAGTTCGGATCGCAGC
GATTCACTCCGACGCACTTCAAGCCCTTCTGGATCATGCAGGAACGCGGA
TCTGGAATTGGACATCAAACTTTCCAAGGTGACCAGGCCCAGGTGGCAAG
GGACAAGTGCATCCGAATCTTTTTCACCTCATTCCAGGAAATTAGGGAGA
ACCGTGTGGTGAACCGAAACAATGTGCCGCGCTCTGCCAACAAATGCGTT
GTTTTCCGCACTATGTAG