Gcaud851.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud851.t1
Unique Name	Gcaud851.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	565

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_1229_length_12344_cov_4.015506	contig	NODE_1229_length_12344_cov_4.015506:3868..5562 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	166314.Syncc8109_2011
PFAMs	Polyketide_cyc
Max annot lvl	1117\|Cyanobacteria
Evalue	8.43e-05
EggNOG OGs	COG2867@1\|root,COG2867@2\|Bacteria,1G77Q@1117\|Cyanobacteria,1H0A0@1129\|Synechococcus
Description	Polyketide cyclase / dehydrase and lipid transport
COG category	I

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud851	Gcaud851	Gracilaria caudata M_176_S67 male	gene	NODE_1229_length_12344_cov_4.015506 3868..5562 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud851.t1.stop1	Gcaud851.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_1229_length_12344_cov_4.015506 3868..3870 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud851.t1.CDS1	Gcaud851.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_1229_length_12344_cov_4.015506 3868..5562 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud851.t1.exon1	Gcaud851.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_1229_length_12344_cov_4.015506 3868..5562 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud851.t1.start1	Gcaud851.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_1229_length_12344_cov_4.015506 5560..5562 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud851.t1	Gcaud851.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_1229_length_12344_cov_4.015506 3868..5562 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_1229_length_12344_cov_4.015506:3868..5562-
coding sequence from alignment at NODE_1229_length_12344_cov_4.015506:3868..5562-

mRNA sequence

>Gcaud851.t1 ID=Gcaud851.t1|Name=Gcaud851.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=565bp
MGVSTSRRAWGGRWSAVYSMWTYIHRLLHLLGIAAVDVEEVALLSAPLVR
IRCVRRHRAPVVLAHDPCPMFPDEPLGWVSPSHLHISSTLFFLHFDTSHP
QRVDRARIATAAPSDTSPRAWLAVDHKTGIITLTASEMAAAVFHIHLSNA
KAAVPQVFLQCTCTAGRYLSVHLPTMRARVCASAVAACETFLINHVPLPP
TLAQHRDEPPPQDFTMAAAYQATRSCPLRVQSKAFDWFLASKPGTPVASS
RGKESGWEGFILEYDSPTRSAHIRDSRGLYLGFTEQLDQLIAAPDPSAEG
TENALNAVHSHHRAERFDVEIVADDELITLRSRKGYLSARRDGRIVLSQH
TIPGRREQFYLRLALPSMMDQSTPRLRLRACDGGARQVEASILVPAPAQI
GFDVLRDYDGFHEFIHDASESRILERKSDTELTVLMVQCHTFLVLTIPMT
LVLNVVEDPERKSVVMDLKSGLGVREYKGVWQASERPDGRCLLRCTLLAA
TSVPAPGFLLDGLMSHAMFETMKQLRVECIRRSTKDHQSSPTNSSQRRVA
GRLRARQTSTSLKS*

spliced messenger RNA

>Gcaud851.t1 ID=Gcaud851.t1|Name=Gcaud851.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1695bp|location=Sequence derived from alignment at NODE_1229_length_12344_cov_4.015506:3868..5562- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGGAGTCTCGACCTCGCGCCGTGCCTGGGGCGGGCGCTGGTCCGCCGT
GTACTCCATGTGGACCTACATCCATCGCCTCCTCCACCTTCTCGGCATTG
CCGCCGTTGACGTGGAGGAAGTCGCCCTTCTCTCAGCGCCTCTTGTTCGA
ATACGCTGTGTGCGTCGTCATCGCGCACCCGTTGTTCTCGCACATGATCC
TTGTCCCATGTTTCCAGACGAGCCTCTGGGCTGGGTATCCCCTTCGCACC
TTCATATTTCGTCCACTCTCTTCTTCCTTCACTTCGACACTTCACACCCG
CAACGAGTAGATCGAGCTCGAATTGCCACAGCTGCTCCATCTGATACTAG
TCCCCGAGCATGGCTAGCAGTCGACCATAAAACCGGAATTATCACCCTTA
CTGCTTCCGAAATGGCTGCAGCTGTCTTTCACATTCATCTTTCCAACGCC
AAAGCAGCCGTTCCACAAGTCTTCTTGCAATGCACCTGTACGGCGGGCAG
GTACTTGAGTGTTCATCTCCCTACAATGCGCGCTCGTGTGTGTGCTAGTG
CAGTAGCTGCTTGTGAGACCTTTCTAATCAATCACGTGCCTTTGCCTCCA
ACCTTAGCTCAACACCGTGACGAACCTCCCCCTCAAGACTTCACAATGGC
AGCTGCCTATCAGGCCACTAGATCCTGTCCCTTGCGAGTACAGAGCAAAG
CGTTTGACTGGTTTTTAGCTTCCAAGCCCGGCACGCCAGTCGCTTCATCG
CGCGGAAAGGAGTCTGGCTGGGAGGGTTTCATACTTGAATATGACAGTCC
GACCCGCTCGGCGCACATCCGGGACTCGCGTGGCTTGTATCTTGGCTTTA
CTGAACAGCTTGACCAGCTAATCGCCGCCCCAGACCCCAGTGCCGAAGGG
ACCGAAAACGCACTAAATGCAGTTCATTCTCATCATCGAGCCGAACGCTT
TGATGTCGAGATTGTAGCAGATGACGAACTAATCACGTTGAGGTCGCGAA
AAGGTTACCTTTCAGCCAGACGCGATGGTCGAATTGTACTCAGTCAGCAC
ACCATACCTGGCAGAAGGGAGCAGTTCTATCTACGACTGGCACTTCCGTC
GATGATGGATCAGAGCACTCCGCGACTGCGGCTGCGCGCCTGTGACGGCG
GGGCTCGTCAGGTGGAAGCAAGCATTCTCGTGCCTGCGCCAGCGCAGATT
GGGTTCGATGTGTTGCGAGACTACGATGGTTTTCATGAATTCATACATGA
CGCATCGGAAAGCCGAATACTAGAGAGAAAAAGCGACACAGAGCTGACGG
TGCTTATGGTACAGTGTCACACGTTCTTGGTATTAACCATCCCGATGACA
TTGGTGTTGAACGTTGTCGAGGACCCGGAGCGCAAGAGCGTCGTCATGGA
TTTGAAGAGCGGACTTGGAGTCAGGGAGTACAAGGGCGTTTGGCAGGCAT
CGGAACGACCAGATGGGCGTTGCCTGCTAAGATGCACGCTGTTGGCAGCC
ACATCGGTACCAGCGCCGGGCTTCCTGTTGGACGGCCTCATGTCCCATGC
CATGTTCGAAACAATGAAGCAATTGCGGGTGGAATGTATCCGAAGATCCA
CGAAAGACCATCAATCGTCGCCCACGAACTCCTCGCAGAGGCGCGTCGCA
GGTCGGCTCCGGGCACGGCAAACATCCACCTCGTTGAAGAGTTAG

protein sequence of Gcaud851.t1

>Gcaud851.t1 ID=Gcaud851.t1|Name=Gcaud851.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=565bp
MGVSTSRRAWGGRWSAVYSMWTYIHRLLHLLGIAAVDVEEVALLSAPLVR
IRCVRRHRAPVVLAHDPCPMFPDEPLGWVSPSHLHISSTLFFLHFDTSHP
QRVDRARIATAAPSDTSPRAWLAVDHKTGIITLTASEMAAAVFHIHLSNA
KAAVPQVFLQCTCTAGRYLSVHLPTMRARVCASAVAACETFLINHVPLPP
TLAQHRDEPPPQDFTMAAAYQATRSCPLRVQSKAFDWFLASKPGTPVASS
RGKESGWEGFILEYDSPTRSAHIRDSRGLYLGFTEQLDQLIAAPDPSAEG
TENALNAVHSHHRAERFDVEIVADDELITLRSRKGYLSARRDGRIVLSQH
TIPGRREQFYLRLALPSMMDQSTPRLRLRACDGGARQVEASILVPAPAQI
GFDVLRDYDGFHEFIHDASESRILERKSDTELTVLMVQCHTFLVLTIPMT
LVLNVVEDPERKSVVMDLKSGLGVREYKGVWQASERPDGRCLLRCTLLAA
TSVPAPGFLLDGLMSHAMFETMKQLRVECIRRSTKDHQSSPTNSSQRRVA
GRLRARQTSTSLKS*

mRNA from alignment at NODE_1229_length_12344_cov_4.015506:3868..5562-

Legend: polypeptideCDSexonstart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud851.t1 ID=Gcaud851.t1|Name=Gcaud851.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1695bp|location=Sequence derived from alignment at NODE_1229_length_12344_cov_4.015506:3868..5562- (Gracilaria caudata M_176_S67 male)
ATGGGAGTCTCGACCTCGCGCCGTGCCTGGGGCGGGCGCTGGTCCGCCGT
GTACTCCATGTGGACCTACATCCATCGCCTCCTCCACCTTCTCGGCATTG
CCGCCGTTGACGTGGAGGAAGTCGCCCTTCTCTCAGCGCCTCTTGTTCGA
ATACGCTGTGTGCGTCGTCATCGCGCACCCGTTGTTCTCGCACATGATCC
TTGTCCCATGTTTCCAGACGAGCCTCTGGGCTGGGTATCCCCTTCGCACC
TTCATATTTCGTCCACTCTCTTCTTCCTTCACTTCGACACTTCACACCCG
CAACGAGTAGATCGAGCTCGAATTGCCACAGCTGCTCCATCTGATACTAG
TCCCCGAGCATGGCTAGCAGTCGACCATAAAACCGGAATTATCACCCTTA
CTGCTTCCGAAATGGCTGCAGCTGTCTTTCACATTCATCTTTCCAACGCC
AAAGCAGCCGTTCCACAAGTCTTCTTGCAATGCACCTGTACGGCGGGCAG
GTACTTGAGTGTTCATCTCCCTACAATGCGCGCTCGTGTGTGTGCTAGTG
CAGTAGCTGCTTGTGAGACCTTTCTAATCAATCACGTGCCTTTGCCTCCA
ACCTTAGCTCAACACCGTGACGAACCTCCCCCTCAAGACTTCACAATGGC
AGCTGCCTATCAGGCCACTAGATCCTGTCCCTTGCGAGTACAGAGCAAAG
CGTTTGACTGGTTTTTAGCTTCCAAGCCCGGCACGCCAGTCGCTTCATCG
CGCGGAAAGGAGTCTGGCTGGGAGGGTTTCATACTTGAATATGACAGTCC
GACCCGCTCGGCGCACATCCGGGACTCGCGTGGCTTGTATCTTGGCTTTA
CTGAACAGCTTGACCAGCTAATCGCCGCCCCAGACCCCAGTGCCGAAGGG
ACCGAAAACGCACTAAATGCAGTTCATTCTCATCATCGAGCCGAACGCTT
TGATGTCGAGATTGTAGCAGATGACGAACTAATCACGTTGAGGTCGCGAA
AAGGTTACCTTTCAGCCAGACGCGATGGTCGAATTGTACTCAGTCAGCAC
ACCATACCTGGCAGAAGGGAGCAGTTCTATCTACGACTGGCACTTCCGTC
GATGATGGATCAGAGCACTCCGCGACTGCGGCTGCGCGCCTGTGACGGCG
GGGCTCGTCAGGTGGAAGCAAGCATTCTCGTGCCTGCGCCAGCGCAGATT
GGGTTCGATGTGTTGCGAGACTACGATGGTTTTCATGAATTCATACATGA
CGCATCGGAAAGCCGAATACTAGAGAGAAAAAGCGACACAGAGCTGACGG
TGCTTATGGTACAGTGTCACACGTTCTTGGTATTAACCATCCCGATGACA
TTGGTGTTGAACGTTGTCGAGGACCCGGAGCGCAAGAGCGTCGTCATGGA
TTTGAAGAGCGGACTTGGAGTCAGGGAGTACAAGGGCGTTTGGCAGGCAT
CGGAACGACCAGATGGGCGTTGCCTGCTAAGATGCACGCTGTTGGCAGCC
ACATCGGTACCAGCGCCGGGCTTCCTGTTGGACGGCCTCATGTCCCATGC
CATGTTCGAAACAATGAAGCAATTGCGGGTGGAATGTATCCGAAGATCCA
CGAAAGACCATCAATCGTCGCCCACGAACTCCTCGCAGAGGCGCGTCGCA
GGTCGGCTCCGGGCACGGCAAACATCCACCTCGTTGAAGAGTTAG

Coding sequence (CDS) from alignment at NODE_1229_length_12344_cov_4.015506:3868..5562-

>Gcaud851.t1 ID=Gcaud851.t1|Name=Gcaud851.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1695bp|location=Sequence derived from alignment at NODE_1229_length_12344_cov_4.015506:3868..5562- (Gracilaria caudata M_176_S67 male)
ATGGGAGTCTCGACCTCGCGCCGTGCCTGGGGCGGGCGCTGGTCCGCCGT
GTACTCCATGTGGACCTACATCCATCGCCTCCTCCACCTTCTCGGCATTG
CCGCCGTTGACGTGGAGGAAGTCGCCCTTCTCTCAGCGCCTCTTGTTCGA
ATACGCTGTGTGCGTCGTCATCGCGCACCCGTTGTTCTCGCACATGATCC
TTGTCCCATGTTTCCAGACGAGCCTCTGGGCTGGGTATCCCCTTCGCACC
TTCATATTTCGTCCACTCTCTTCTTCCTTCACTTCGACACTTCACACCCG
CAACGAGTAGATCGAGCTCGAATTGCCACAGCTGCTCCATCTGATACTAG
TCCCCGAGCATGGCTAGCAGTCGACCATAAAACCGGAATTATCACCCTTA
CTGCTTCCGAAATGGCTGCAGCTGTCTTTCACATTCATCTTTCCAACGCC
AAAGCAGCCGTTCCACAAGTCTTCTTGCAATGCACCTGTACGGCGGGCAG
GTACTTGAGTGTTCATCTCCCTACAATGCGCGCTCGTGTGTGTGCTAGTG
CAGTAGCTGCTTGTGAGACCTTTCTAATCAATCACGTGCCTTTGCCTCCA
ACCTTAGCTCAACACCGTGACGAACCTCCCCCTCAAGACTTCACAATGGC
AGCTGCCTATCAGGCCACTAGATCCTGTCCCTTGCGAGTACAGAGCAAAG
CGTTTGACTGGTTTTTAGCTTCCAAGCCCGGCACGCCAGTCGCTTCATCG
CGCGGAAAGGAGTCTGGCTGGGAGGGTTTCATACTTGAATATGACAGTCC
GACCCGCTCGGCGCACATCCGGGACTCGCGTGGCTTGTATCTTGGCTTTA
CTGAACAGCTTGACCAGCTAATCGCCGCCCCAGACCCCAGTGCCGAAGGG
ACCGAAAACGCACTAAATGCAGTTCATTCTCATCATCGAGCCGAACGCTT
TGATGTCGAGATTGTAGCAGATGACGAACTAATCACGTTGAGGTCGCGAA
AAGGTTACCTTTCAGCCAGACGCGATGGTCGAATTGTACTCAGTCAGCAC
ACCATACCTGGCAGAAGGGAGCAGTTCTATCTACGACTGGCACTTCCGTC
GATGATGGATCAGAGCACTCCGCGACTGCGGCTGCGCGCCTGTGACGGCG
GGGCTCGTCAGGTGGAAGCAAGCATTCTCGTGCCTGCGCCAGCGCAGATT
GGGTTCGATGTGTTGCGAGACTACGATGGTTTTCATGAATTCATACATGA
CGCATCGGAAAGCCGAATACTAGAGAGAAAAAGCGACACAGAGCTGACGG
TGCTTATGGTACAGTGTCACACGTTCTTGGTATTAACCATCCCGATGACA
TTGGTGTTGAACGTTGTCGAGGACCCGGAGCGCAAGAGCGTCGTCATGGA
TTTGAAGAGCGGACTTGGAGTCAGGGAGTACAAGGGCGTTTGGCAGGCAT
CGGAACGACCAGATGGGCGTTGCCTGCTAAGATGCACGCTGTTGGCAGCC
ACATCGGTACCAGCGCCGGGCTTCCTGTTGGACGGCCTCATGTCCCATGC
CATGTTCGAAACAATGAAGCAATTGCGGGTGGAATGTATCCGAAGATCCA
CGAAAGACCATCAATCGTCGCCCACGAACTCCTCGCAGAGGCGCGTCGCA
GGTCGGCTCCGGGCACGGCAAACATCCACCTCGTTGAAGAGTTAG