Gcaud8508.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud8508.t1
Unique Name	Gcaud8508.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	338

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_679_length_19824_cov_4.222318	contig	NODE_679_length_19824_cov_4.222318:10946..11959 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud8508	Gcaud8508	Gracilaria caudata M_176_S67 male	gene	NODE_679_length_19824_cov_4.222318 10946..11959 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud8508.t1.stop1	Gcaud8508.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_679_length_19824_cov_4.222318 10946..10948 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud8508.t1.CDS1	Gcaud8508.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_679_length_19824_cov_4.222318 10946..11959 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud8508.t1.exon1	Gcaud8508.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_679_length_19824_cov_4.222318 10946..11959 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud8508.t1.start1	Gcaud8508.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_679_length_19824_cov_4.222318 11957..11959 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud8508.t1	Gcaud8508.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_679_length_19824_cov_4.222318 10946..11959 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_679_length_19824_cov_4.222318:10946..11959-
coding sequence from alignment at NODE_679_length_19824_cov_4.222318:10946..11959-

mRNA sequence

>Gcaud8508.t1 ID=Gcaud8508.t1|Name=Gcaud8508.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=338bp
MAERNENSTTKPPVVSLKSTISEVVLNTLCKARMVSATTREQLTDEMLKE
ALVDRTVVNFVSLRVDEMESMVQNVKMDMSIKDCKIRIWQLVIDYENALC
AEGYQGVIEKCPQTAIKHIRDRTRPLVLQERMVQVLQSAKKEGCHYNHFY
DFVQRLVQEAERVEKEGHTEMVSVENIGQESKPPVESEKETSAENVGNSL
KPQDGATLPVPCEIAVDGVSKVKTPFCWNKAKCFGQRHRLKHCPNSTSKE
KESCFKRAMRRKYGRKSKKLKDNKGMINNVRILNIDQHSILFKVSFADAI
KDAVTAKVHLAEALAGKGFHQTTIQAAEVKDTDMRDD*

spliced messenger RNA

>Gcaud8508.t1 ID=Gcaud8508.t1|Name=Gcaud8508.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1014bp|location=Sequence derived from alignment at NODE_679_length_19824_cov_4.222318:10946..11959- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCGGAGAGAAATGAGAACTCTACAACAAAACCGCCTGTCGTATCCCT
CAAGTCAACTATTTCGGAGGTTGTGTTGAACACGTTGTGTAAAGCACGCA
TGGTATCTGCAACTACCAGAGAACAGCTTACCGATGAAATGCTGAAAGAA
GCACTTGTTGATCGCACCGTTGTCAACTTTGTCAGTCTACGAGTTGATGA
AATGGAAAGTATGGTACAGAATGTGAAGATGGATATGAGTATCAAGGATT
GTAAAATTCGCATATGGCAACTGGTAATCGACTACGAGAACGCTCTGTGT
GCTGAAGGATACCAGGGCGTGATTGAGAAGTGTCCTCAAACGGCTATTAA
GCATATTAGGGATCGTACGAGGCCTCTCGTGTTGCAGGAGAGAATGGTCC
AGGTTCTGCAGAGCGCAAAGAAGGAAGGTTGTCACTACAATCACTTTTAC
GATTTTGTACAAAGATTAGTACAAGAAGCAGAAAGGGTAGAAAAGGAAGG
ACATACCGAGATGGTATCCGTGGAGAACATCGGACAGGAGTCGAAGCCGC
CAGTCGAGTCGGAGAAGGAAACATCCGCCGAAAATGTGGGTAATAGTCTC
AAGCCCCAAGACGGTGCCACACTCCCCGTGCCATGTGAAATTGCCGTGGA
TGGAGTGAGCAAGGTGAAAACTCCGTTTTGCTGGAACAAGGCAAAATGTT
TTGGACAGCGGCATCGATTGAAGCACTGTCCAAATTCAACAAGTAAAGAG
AAGGAGAGTTGTTTCAAGCGCGCAATGCGAAGGAAATATGGTCGGAAATC
AAAGAAACTGAAGGATAACAAGGGAATGATTAATAACGTTCGTATCTTGA
ATATAGACCAGCATTCTATTCTGTTCAAGGTTTCGTTTGCGGATGCAATC
AAAGATGCGGTTACTGCCAAGGTTCATCTGGCTGAGGCTTTGGCTGGCAA
GGGTTTTCACCAAACTACTATCCAGGCAGCTGAGGTGAAAGACACGGACA
TGCGCGATGACTGA

protein sequence of Gcaud8508.t1

>Gcaud8508.t1 ID=Gcaud8508.t1|Name=Gcaud8508.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=338bp
MAERNENSTTKPPVVSLKSTISEVVLNTLCKARMVSATTREQLTDEMLKE
ALVDRTVVNFVSLRVDEMESMVQNVKMDMSIKDCKIRIWQLVIDYENALC
AEGYQGVIEKCPQTAIKHIRDRTRPLVLQERMVQVLQSAKKEGCHYNHFY
DFVQRLVQEAERVEKEGHTEMVSVENIGQESKPPVESEKETSAENVGNSL
KPQDGATLPVPCEIAVDGVSKVKTPFCWNKAKCFGQRHRLKHCPNSTSKE
KESCFKRAMRRKYGRKSKKLKDNKGMINNVRILNIDQHSILFKVSFADAI
KDAVTAKVHLAEALAGKGFHQTTIQAAEVKDTDMRDD*

mRNA from alignment at NODE_679_length_19824_cov_4.222318:10946..11959-

Legend: polypeptideCDSexonstart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud8508.t1 ID=Gcaud8508.t1|Name=Gcaud8508.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1014bp|location=Sequence derived from alignment at NODE_679_length_19824_cov_4.222318:10946..11959- (Gracilaria caudata M_176_S67 male)
ATGGCGGAGAGAAATGAGAACTCTACAACAAAACCGCCTGTCGTATCCCT
CAAGTCAACTATTTCGGAGGTTGTGTTGAACACGTTGTGTAAAGCACGCA
TGGTATCTGCAACTACCAGAGAACAGCTTACCGATGAAATGCTGAAAGAA
GCACTTGTTGATCGCACCGTTGTCAACTTTGTCAGTCTACGAGTTGATGA
AATGGAAAGTATGGTACAGAATGTGAAGATGGATATGAGTATCAAGGATT
GTAAAATTCGCATATGGCAACTGGTAATCGACTACGAGAACGCTCTGTGT
GCTGAAGGATACCAGGGCGTGATTGAGAAGTGTCCTCAAACGGCTATTAA
GCATATTAGGGATCGTACGAGGCCTCTCGTGTTGCAGGAGAGAATGGTCC
AGGTTCTGCAGAGCGCAAAGAAGGAAGGTTGTCACTACAATCACTTTTAC
GATTTTGTACAAAGATTAGTACAAGAAGCAGAAAGGGTAGAAAAGGAAGG
ACATACCGAGATGGTATCCGTGGAGAACATCGGACAGGAGTCGAAGCCGC
CAGTCGAGTCGGAGAAGGAAACATCCGCCGAAAATGTGGGTAATAGTCTC
AAGCCCCAAGACGGTGCCACACTCCCCGTGCCATGTGAAATTGCCGTGGA
TGGAGTGAGCAAGGTGAAAACTCCGTTTTGCTGGAACAAGGCAAAATGTT
TTGGACAGCGGCATCGATTGAAGCACTGTCCAAATTCAACAAGTAAAGAG
AAGGAGAGTTGTTTCAAGCGCGCAATGCGAAGGAAATATGGTCGGAAATC
AAAGAAACTGAAGGATAACAAGGGAATGATTAATAACGTTCGTATCTTGA
ATATAGACCAGCATTCTATTCTGTTCAAGGTTTCGTTTGCGGATGCAATC
AAAGATGCGGTTACTGCCAAGGTTCATCTGGCTGAGGCTTTGGCTGGCAA
GGGTTTTCACCAAACTACTATCCAGGCAGCTGAGGTGAAAGACACGGACA
TGCGCGATGACTGA

Coding sequence (CDS) from alignment at NODE_679_length_19824_cov_4.222318:10946..11959-

>Gcaud8508.t1 ID=Gcaud8508.t1|Name=Gcaud8508.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1014bp|location=Sequence derived from alignment at NODE_679_length_19824_cov_4.222318:10946..11959- (Gracilaria caudata M_176_S67 male)
ATGGCGGAGAGAAATGAGAACTCTACAACAAAACCGCCTGTCGTATCCCT
CAAGTCAACTATTTCGGAGGTTGTGTTGAACACGTTGTGTAAAGCACGCA
TGGTATCTGCAACTACCAGAGAACAGCTTACCGATGAAATGCTGAAAGAA
GCACTTGTTGATCGCACCGTTGTCAACTTTGTCAGTCTACGAGTTGATGA
AATGGAAAGTATGGTACAGAATGTGAAGATGGATATGAGTATCAAGGATT
GTAAAATTCGCATATGGCAACTGGTAATCGACTACGAGAACGCTCTGTGT
GCTGAAGGATACCAGGGCGTGATTGAGAAGTGTCCTCAAACGGCTATTAA
GCATATTAGGGATCGTACGAGGCCTCTCGTGTTGCAGGAGAGAATGGTCC
AGGTTCTGCAGAGCGCAAAGAAGGAAGGTTGTCACTACAATCACTTTTAC
GATTTTGTACAAAGATTAGTACAAGAAGCAGAAAGGGTAGAAAAGGAAGG
ACATACCGAGATGGTATCCGTGGAGAACATCGGACAGGAGTCGAAGCCGC
CAGTCGAGTCGGAGAAGGAAACATCCGCCGAAAATGTGGGTAATAGTCTC
AAGCCCCAAGACGGTGCCACACTCCCCGTGCCATGTGAAATTGCCGTGGA
TGGAGTGAGCAAGGTGAAAACTCCGTTTTGCTGGAACAAGGCAAAATGTT
TTGGACAGCGGCATCGATTGAAGCACTGTCCAAATTCAACAAGTAAAGAG
AAGGAGAGTTGTTTCAAGCGCGCAATGCGAAGGAAATATGGTCGGAAATC
AAAGAAACTGAAGGATAACAAGGGAATGATTAATAACGTTCGTATCTTGA
ATATAGACCAGCATTCTATTCTGTTCAAGGTTTCGTTTGCGGATGCAATC
AAAGATGCGGTTACTGCCAAGGTTCATCTGGCTGAGGCTTTGGCTGGCAA
GGGTTTTCACCAAACTACTATCCAGGCAGCTGAGGTGAAAGACACGGACA
TGCGCGATGACTGA