Gcaud8504.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud8504.t1
Unique Name	Gcaud8504.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	416

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_679_length_19824_cov_4.222318	contig	NODE_679_length_19824_cov_4.222318:573..3779 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	72019.SARC_05368T0
PFAMs	ABC_membrane,ABC_tran
Max annot lvl	33154\|Opisthokonta
KEGG ko	ko:K05658
KEGG TC	3.A.1.201
KEGG Pathway	ko02010,ko04976,ko05206,ko05226,map02010,map04976,map05206,map05226
Evalue	1.3e-07
EggNOG OGs	COG1132@1\|root,KOG0055@2759\|Eukaryota,38E88@33154\|Opisthokonta
EC	3.6.3.44
Description	ATPase activity, coupled to transmembrane movement of substances
COG category	Q
BRITE	ko00000,ko00001,ko01000,ko02000,ko04090,ko04147

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud8504	Gcaud8504	Gracilaria caudata M_176_S67 male	gene	NODE_679_length_19824_cov_4.222318 573..3779 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud8504.t1	Gcaud8504.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_679_length_19824_cov_4.222318 573..3779 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud8504.t1.stop1	Gcaud8504.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_679_length_19824_cov_4.222318 573..575 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud8504.t1.CDS1	Gcaud8504.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_679_length_19824_cov_4.222318 573..813 -
Gcaud8504.t1.CDS2	Gcaud8504.t1.CDS2	Gracilaria caudata M_176_S67 male	CDS	NODE_679_length_19824_cov_4.222318 2434..2759 -
Gcaud8504.t1.CDS3	Gcaud8504.t1.CDS3	Gracilaria caudata M_176_S67 male	CDS	NODE_679_length_19824_cov_4.222318 3099..3779 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud8504.t1.exon1	Gcaud8504.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_679_length_19824_cov_4.222318 573..813 -
Gcaud8504.t1.exon2	Gcaud8504.t1.exon2	Gracilaria caudata M_176_S67 male	exon	NODE_679_length_19824_cov_4.222318 2434..2759 -
Gcaud8504.t1.exon3	Gcaud8504.t1.exon3	Gracilaria caudata M_176_S67 male	exon	NODE_679_length_19824_cov_4.222318 3099..3779 -

The following intron feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud8504.t1.intron1	Gcaud8504.t1.intron1	Gracilaria caudata M_176_S67 male	intron	NODE_679_length_19824_cov_4.222318 814..2433 -
Gcaud8504.t1.intron2	Gcaud8504.t1.intron2	Gracilaria caudata M_176_S67 male	intron	NODE_679_length_19824_cov_4.222318 2760..3098 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud8504.t1.start1	Gcaud8504.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_679_length_19824_cov_4.222318 3777..3779 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_679_length_19824_cov_4.222318:573..3779-
coding sequence from alignment at NODE_679_length_19824_cov_4.222318:573..3779-

mRNA sequence

>Gcaud8504.t1 ID=Gcaud8504.t1|Name=Gcaud8504.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=416bp
MRSLRPTNQNNANFLVAEPTAQHNEPSASAISTKCPEPNEHNRRIDVLFT
VLHKKHSKVELQGLAGAIGLIKRGNKSHVVSRFMLQAIIHEHKGKDVPQC
FNNASLSKAFDAYQEEHRSCEKCPDVFELLEGVLECERPKWKRLLQDEKI
YSSLDDANGEQASESVTVPEFSLNEFARLCILLRDDDLSRAAMRNAVGLE
LTRLPLENGTTRDSFWGTVEKRFNNTAEKESSLDGPLRKKKRGSDDSASM
LKDCLSQASKTSVCNTEAFNKNLQTVENDERDARVHRTLELLRAELRNRR
LDNAFEEDDVGAKAELFLKEWSVKHMNNLMKSLEGEFSEFCQYIIWYATF
MATGDFVEQEHRTFHEMLLSSMAIMFAALTLGNISIVAPDVAAAKIGATQ
IYRLIDRMTLIDLAL*

spliced messenger RNA

>Gcaud8504.t1 ID=Gcaud8504.t1|Name=Gcaud8504.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1248bp|location=Sequence derived from alignment at NODE_679_length_19824_cov_4.222318:573..3779- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCGGTCCTTGAGACCCACGAATCAAAACAATGCAAACTTCCTCGTTGC
AGAGCCGACAGCACAACACAATGAACCTTCCGCTTCCGCTATTTCGACAA
AGTGCCCGGAACCAAATGAACATAATCGACGCATTGATGTTCTCTTCACA
GTGCTGCACAAAAAGCATAGCAAGGTCGAACTTCAAGGACTTGCTGGAGC
GATAGGTCTCATCAAGCGAGGAAACAAATCACATGTGGTTTCGAGATTCA
TGTTGCAAGCGATCATTCATGAGCATAAGGGAAAGGATGTTCCCCAATGC
TTTAATAATGCGTCGCTTTCGAAAGCTTTTGACGCATATCAAGAAGAACA
TCGATCCTGCGAGAAATGTCCTGACGTTTTCGAATTGCTCGAAGGAGTCT
TGGAATGTGAGAGACCCAAATGGAAAAGACTGCTACAAGATGAGAAAATT
TACTCATCACTAGATGATGCAAATGGTGAGCAAGCGAGCGAGAGCGTAAC
AGTGCCAGAGTTTTCACTGAACGAGTTCGCAAGACTTTGCATTCTGTTGC
GAGATGATGATTTATCCCGTGCTGCAATGCGAAATGCAGTTGGACTAGAG
CTCACACGGCTGCCGTTAGAGAATGGGACTACTCGAGATTCGTTTTGGGG
AACGGTGGAAAAGCGCTTCAACAATACTGCAGAGAAGGAAAGTAGTTTAG
ATGGTCCATTGCGAAAGAAAAAACGCGGTTCTGATGACTCGGCGAGTATG
CTCAAGGACTGTCTTTCTCAAGCATCCAAGACTTCTGTTTGCAACACGGA
GGCTTTCAATAAAAACCTTCAGACAGTCGAGAACGATGAACGGGATGCGA
GAGTTCATAGGACGCTGGAGCTGCTTCGTGCCGAGCTCCGCAACCGACGA
TTGGACAACGCGTTCGAGGAGGATGATGTGGGAGCAAAAGCAGAGTTGTT
CTTGAAAGAGTGGTCTGTCAAGCACATGAACAACCTGATGAAGAGCTTGG
AAGGCGAGTTTTCCGAGTTCTGCCAGTACATCATATGGTATGCCACCTTT
ATGGCCACAGGAGACTTTGTGGAACAGGAACACCGTACTTTCCATGAAAT
GCTTTTGTCTTCCATGGCTATTATGTTTGCAGCACTGACTCTGGGTAATA
TATCCATCGTTGCCCCGGATGTTGCAGCTGCGAAGATTGGAGCTACTCAA
ATCTATCGCTTGATTGACCGCATGACCCTGATCGACCTGGCTCTGTGA

protein sequence of Gcaud8504.t1

>Gcaud8504.t1 ID=Gcaud8504.t1|Name=Gcaud8504.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=416bp
MRSLRPTNQNNANFLVAEPTAQHNEPSASAISTKCPEPNEHNRRIDVLFT
VLHKKHSKVELQGLAGAIGLIKRGNKSHVVSRFMLQAIIHEHKGKDVPQC
FNNASLSKAFDAYQEEHRSCEKCPDVFELLEGVLECERPKWKRLLQDEKI
YSSLDDANGEQASESVTVPEFSLNEFARLCILLRDDDLSRAAMRNAVGLE
LTRLPLENGTTRDSFWGTVEKRFNNTAEKESSLDGPLRKKKRGSDDSASM
LKDCLSQASKTSVCNTEAFNKNLQTVENDERDARVHRTLELLRAELRNRR
LDNAFEEDDVGAKAELFLKEWSVKHMNNLMKSLEGEFSEFCQYIIWYATF
MATGDFVEQEHRTFHEMLLSSMAIMFAALTLGNISIVAPDVAAAKIGATQ
IYRLIDRMTLIDLAL*

mRNA from alignment at NODE_679_length_19824_cov_4.222318:573..3779-

Legend: polypeptideCDSexonstart_codonintronstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud8504.t1 ID=Gcaud8504.t1|Name=Gcaud8504.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=3207bp|location=Sequence derived from alignment at NODE_679_length_19824_cov_4.222318:573..3779- (Gracilaria caudata M_176_S67 male)
ATGCGGTCCTTGAGACCCACGAATCAAAACAATGCAAACTTCCTCGTTGC
AGAGCCGACAGCACAACACAATGAACCTTCCGCTTCCGCTATTTCGACAA
AGTGCCCGGAACCAAATGAACATAATCGACGCATTGATGTTCTCTTCACA
GTGCTGCACAAAAAGCATAGCAAGGTCGAACTTCAAGGACTTGCTGGAGC
GATAGGTCTCATCAAGCGAGGAAACAAATCACATGTGGTTTCGAGATTCA
TGTTGCAAGCGATCATTCATGAGCATAAGGGAAAGGATGTTCCCCAATGC
TTTAATAATGCGTCGCTTTCGAAAGCTTTTGACGCATATCAAGAAGAACA
TCGATCCTGCGAGAAATGTCCTGACGTTTTCGAATTGCTCGAAGGAGTCT
TGGAATGTGAGAGACCCAAATGGAAAAGACTGCTACAAGATGAGAAAATT
TACTCATCACTAGATGATGCAAATGGTGAGCAAGCGAGCGAGAGCGTAAC
AGTGCCAGAGTTTTCACTGAACGAGTTCGCAAGACTTTGCATTCTGTTGC
GAGATGATGATTTATCCCGTGCTGCAATGCGAAATGCAGTTGGACTAGAG
CTCACACGGCTGCCGTTAGAGAATGGGACTACTCGAGATTCGTTTTGGGG
AACGGTGGAAAAGCGCTTCAACAATACTGCAGTGGTTACAGAGGAAAACT
TTACTGGTTCGTTAGACGGTATCGATTCAAATCGCGCCCCTCTGGCTCAT
AGATCTGCCTCGCAGTTGAAGACGCAGTACAATGATTCCAAAAAAGATTT
CACTAACTATCACTCAATGTGGAATCAGTCAGGCCAAAATGACCCGCAAC
GATTTGTCGACTTCCTCCCGAAGTTTCGGAATGATTTACTGAGCGCTTCG
AAGCGCTCTTTTGTTCTATTCATTGTTTGTCGTTGTGGGACTCCGAATGT
CGACACGGATTTACTGCATCTGGTGTCACATGTGACGGCCGCTGATGTTG
GCTATGACACTGTGGAGCAGGAGAAGGAAAGTAGTTTAGATGGTCCATTG
CGAAAGAAAAAACGCGGTTCTGATGACTCGGCGAGTATGCTCAAGGACTG
TCTTTCTCAAGCATCCAAGACTTCTGTTTGCAACACGGAGGCTTTCAATA
AAAACCTTCAGACAGTCGAGAACGATGAACGGGATGCGAGAGTTCATAGG
ACGCTGGAGCTGCTTCGTGCCGAGCTCCGCAACCGACGATTGGACAACGC
GTTCGAGGAGGATGATGTGGGAGCAAAAGCAGAGTTGTTCTTGAAAGAGT
GGTCTGTCAAGCACATGAACAACCTGATGAAGAGCTTGGAAGGCGAGTAA
GTCGGGAGGTGCCGATGTCTCGAGCCCTTTTACTGGTGCTTCATTCTGTC
TTGTGAAGTGTTACTGTCTTGTATGCGTGCGCTTTTTCTCTCTTCGTCTT
GACGTTCTGCTTTCATAACCCCTCATGCTATGTTGTAGATGAATAGATTT
AGTTGTCGTTGAATCCGCACTGCCCAAACCATTTTGTACTCCACAACCTC
TAAACACTTCTATAAGTTGAAGCCCTTGGCCTGCTTCATCCCGCCTCCAG
ATTCTACCTGTCGTCGTCGCAACTTCCCGTGATGCTTTTGCAGCAGTCAC
TTAAACACTTCCTATGCTCATACCTCGTCTTCCCGTCGAGATCGACTTTC
TTTTCGCTTGGTGCGTCCGTTCCTTTCCTCTCTTTTGACTTCTGTTTAAG
GTTTTGTTCGACTTGCATATCTTTGTGTTCTAAGGCGAGGCCATCTGCTT
CTGCCGCTTTCTTTGAGCCAAGCAGGGCCATGGAAGTTTGCTCGGGTCTG
GGATCTTCTGATCGTGGCCGTTTTTTCATGATATCGAGAACCGCTTTCGC
CCAATCATCCATGACATTCATATCTTCCTTCCATAGTTCCCATCCATGAC
ATGGAACTCCGTGGATTCTTACCTCAAAAGTCCTGCATATAGCTTTAAGG
TTTTCTAGGGCGTTTGGAGACATATCGCAAACGGAATAGGCAGAGCGGTT
CCTCGGAGATTTGAAAACAACTCTGACGACGCTTGTTCTATGGCTTCCGA
CGTAGACGACGCAGTTAATGGTTTATGCCAATCTGATGACATTTTACATT
TCAAGATCCCTTTGCCCTTCACATCTAGCCCGATATGAAGTATCAAACAG
CAGATACTTGAGCTCCTTGGCAGTAGAAGAACTATTTTGTTTGGAGATAT
ATCTCCCGAGAACTGCTTTCTTTGGCAATTGGTCTCAGTGCTTGAAAGAG
AAGAGAAGCAGAGTAATCAATGAGCTGGGTTCAGAGGGTTGCATAAAATC
TACGGGAGAGTTTCATCGAAGAAGATGACCGCCGCTGAGATTGGATATGT
TTTTCCAACTCTTCTTTGGCTGTCTCATGGAGAATATAACTCCTTCCGAA
AACGGCTCAAGTGAGTCAACAAGTTCTAACTCGGTATCCCCACCGAGAGT
GATCATCTGATATAATTCCTTAAGCTTTAGTGTGATCACTCCGAAACCAG
TCATGAACCCATCGAGTCTAGCTCGTCTCAATCTATCGCACTCAGGCTCT
GTTTCATCTCCCTCTGATGTGAGTTCATCCAATTGCTTCACCTGATCCTT
GTATCCGGTGTCCTTGGCTCATGGGGTCTCTAGTCGCAGGTCTCATCATT
GCATTTGTGAATTGCCGGCGTCTCACGTTCGTCGTGCTCGCAGTCATATC
TGGTGTTGCGCTTGGTGGGTACTCTGAGATGCAGGCTTTGGCTGGGATTG
ACTCTGCGGCGAAGAAGCACTACCCTGGCGGCTGAGGCCGTAGACAACGT
GGGTAAAGTCCGCAGTCTTGGAATCCAATACTACTTCGTCGATCGGTACA
ACAGCGGCATTAACGAGACGGTCAATGCCCGAAGGCGAAAGCCCTCTTCA
CTAGAATCCCATACAGGTTTTCCGAGTTCTGCCAGTACATCATATGGTAT
GCCACCTTTATGGCCACAGGAGACTTTGTGGAACAGGAACACCGTACTTT
CCATGAAATGCTTTTGTCTTCCATGGCTATTATGTTTGCAGCACTGACTC
TGGGTAATATATCCATCGTTGCCCCGGATGTTGCAGCTGCGAAGATTGGA
GCTACTCAAATCTATCGCTTGATTGACCGCATGACCCTGATCGACCTGGC
TCTGTGA

Coding sequence (CDS) from alignment at NODE_679_length_19824_cov_4.222318:573..3779-

>Gcaud8504.t1 ID=Gcaud8504.t1|Name=Gcaud8504.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1248bp|location=Sequence derived from alignment at NODE_679_length_19824_cov_4.222318:573..3779- (Gracilaria caudata M_176_S67 male)
ATGCGGTCCTTGAGACCCACGAATCAAAACAATGCAAACTTCCTCGTTGC
AGAGCCGACAGCACAACACAATGAACCTTCCGCTTCCGCTATTTCGACAA
AGTGCCCGGAACCAAATGAACATAATCGACGCATTGATGTTCTCTTCACA
GTGCTGCACAAAAAGCATAGCAAGGTCGAACTTCAAGGACTTGCTGGAGC
GATAGGTCTCATCAAGCGAGGAAACAAATCACATGTGGTTTCGAGATTCA
TGTTGCAAGCGATCATTCATGAGCATAAGGGAAAGGATGTTCCCCAATGC
TTTAATAATGCGTCGCTTTCGAAAGCTTTTGACGCATATCAAGAAGAACA
TCGATCCTGCGAGAAATGTCCTGACGTTTTCGAATTGCTCGAAGGAGTCT
TGGAATGTGAGAGACCCAAATGGAAAAGACTGCTACAAGATGAGAAAATT
TACTCATCACTAGATGATGCAAATGGTGAGCAAGCGAGCGAGAGCGTAAC
AGTGCCAGAGTTTTCACTGAACGAGTTCGCAAGACTTTGCATTCTGTTGC
GAGATGATGATTTATCCCGTGCTGCAATGCGAAATGCAGTTGGACTAGAG
CTCACACGGCTGCCGTTAGAGAATGGGACTACTCGAGATTCGTTTTGGGG
AACGGTGGAAAAGCGCTTCAACAATACTGCAGAGAAGGAAAGTAGTTTAG
ATGGTCCATTGCGAAAGAAAAAACGCGGTTCTGATGACTCGGCGAGTATG
CTCAAGGACTGTCTTTCTCAAGCATCCAAGACTTCTGTTTGCAACACGGA
GGCTTTCAATAAAAACCTTCAGACAGTCGAGAACGATGAACGGGATGCGA
GAGTTCATAGGACGCTGGAGCTGCTTCGTGCCGAGCTCCGCAACCGACGA
TTGGACAACGCGTTCGAGGAGGATGATGTGGGAGCAAAAGCAGAGTTGTT
CTTGAAAGAGTGGTCTGTCAAGCACATGAACAACCTGATGAAGAGCTTGG
AAGGCGAGTTTTCCGAGTTCTGCCAGTACATCATATGGTATGCCACCTTT
ATGGCCACAGGAGACTTTGTGGAACAGGAACACCGTACTTTCCATGAAAT
GCTTTTGTCTTCCATGGCTATTATGTTTGCAGCACTGACTCTGGGTAATA
TATCCATCGTTGCCCCGGATGTTGCAGCTGCGAAGATTGGAGCTACTCAA
ATCTATCGCTTGATTGACCGCATGACCCTGATCGACCTGGCTCTGTGA