Gcaud8503.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud8503.t1
Unique Name	Gcaud8503.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	298

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_1885_length_7873_cov_4.390902	contig	NODE_1885_length_7873_cov_4.390902:4886..5874 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	1433126.BN938_1275
PFAMs	Glyco_hydro_16
Max annot lvl	976\|Bacteroidetes
Evalue	5.84e-25
EggNOG OGs	COG2273@1\|root,COG2273@2\|Bacteria,4NVAB@976\|Bacteroidetes,2FV4Z@200643\|Bacteroidia
Description	Glycosyl hydrolases family 16
COG category	G

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud8503	Gcaud8503	Gracilaria caudata M_176_S67 male	gene	NODE_1885_length_7873_cov_4.390902 4886..5874 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud8503.t1	Gcaud8503.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_1885_length_7873_cov_4.390902 4886..5874 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud8503.t1.start1	Gcaud8503.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_1885_length_7873_cov_4.390902 4886..4888 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud8503.t1.CDS1	Gcaud8503.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_1885_length_7873_cov_4.390902 4886..5763 +
Gcaud8503.t1.CDS2	Gcaud8503.t1.CDS2	Gracilaria caudata M_176_S67 male	CDS	NODE_1885_length_7873_cov_4.390902 5859..5874 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud8503.t1.exon1	Gcaud8503.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_1885_length_7873_cov_4.390902 4886..5763 +
Gcaud8503.t1.exon2	Gcaud8503.t1.exon2	Gracilaria caudata M_176_S67 male	exon	NODE_1885_length_7873_cov_4.390902 5859..5874 +

The following intron feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud8503.t1.intron1	Gcaud8503.t1.intron1	Gracilaria caudata M_176_S67 male	intron	NODE_1885_length_7873_cov_4.390902 5764..5858 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud8503.t1.stop1	Gcaud8503.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_1885_length_7873_cov_4.390902 5872..5874 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_1885_length_7873_cov_4.390902:4886..5874+
coding sequence from alignment at NODE_1885_length_7873_cov_4.390902:4886..5874+

mRNA sequence

>Gcaud8503.t1 ID=Gcaud8503.t1|Name=Gcaud8503.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=298bp
MALPEVRFKPNLINGHNDPPPRYILNRESAGWKWVKQYNFSSEFNTERAG
EVVPMNQLDRWTTDNHWQGRFPAVFDMNNVTYDGRSMVLRVRQHNAPTSG
FLRTFGESHRRAIDERMTMGRRFYTGSFVRSRGNITYGYFESVVKMGHSG
LSSAFWLKERGGREREIDVFEYSTSPNLDGDRRRPLANQYLMNVHTFQRR
GNQRIDHENSSFVVFDADLSRQEYVKAGLLWTRNKVVWYLNDTLVRELDH
AGEFRDAKMRVQFDREYFNWIGDPRRNDRFGDFEVMYIRTWQLQRSG*

spliced messenger RNA

>Gcaud8503.t1 ID=Gcaud8503.t1|Name=Gcaud8503.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=894bp|location=Sequence derived from alignment at NODE_1885_length_7873_cov_4.390902:4886..5874+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCCCTCCCAGAAGTCAGGTTTAAACCGAATCTTATCAATGGACATAA
CGATCCACCACCGCGATACATTTTGAACCGAGAATCGGCTGGTTGGAAAT
GGGTGAAGCAATACAACTTCTCCTCCGAGTTCAACACAGAAAGAGCCGGC
GAAGTAGTTCCAATGAATCAGCTCGATCGATGGACAACCGACAATCACTG
GCAAGGACGCTTCCCTGCCGTTTTCGATATGAACAATGTCACCTACGACG
GGCGATCCATGGTGTTAAGGGTGCGCCAACATAACGCCCCCACTTCAGGC
TTTCTTCGAACGTTTGGTGAGAGCCACCGAAGAGCTATCGACGAGAGAAT
GACAATGGGACGTCGCTTTTATACCGGCTCATTCGTGAGAAGCAGAGGAA
ACATCACGTACGGTTACTTTGAGAGCGTGGTCAAAATGGGACACTCTGGG
CTGTCGAGCGCGTTTTGGCTCAAGGAACGAGGTGGCAGAGAACGTGAGAT
CGACGTGTTTGAGTACAGCACGAGCCCAAATCTAGACGGAGACCGACGCA
GACCATTGGCCAATCAGTATCTCATGAATGTGCATACCTTTCAAAGACGT
GGAAATCAGCGGATCGATCATGAGAACTCGAGCTTTGTCGTGTTTGACGC
TGATTTGAGCAGGCAGGAATACGTCAAGGCGGGGCTGCTTTGGACAAGGA
ATAAGGTGGTCTGGTATCTTAACGACACGCTAGTGAGAGAACTGGATCAT
GCCGGGGAGTTCCGAGACGCGAAGATGCGTGTGCAGTTCGATCGGGAGTA
CTTCAACTGGATTGGAGATCCGCGCCGTAATGATCGGTTCGGCGACTTTG
AGGTGATGTACATTCGCACTTGGCAATTGCAAAGGAGTGGATGA

protein sequence of Gcaud8503.t1

>Gcaud8503.t1 ID=Gcaud8503.t1|Name=Gcaud8503.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=298bp
MALPEVRFKPNLINGHNDPPPRYILNRESAGWKWVKQYNFSSEFNTERAG
EVVPMNQLDRWTTDNHWQGRFPAVFDMNNVTYDGRSMVLRVRQHNAPTSG
FLRTFGESHRRAIDERMTMGRRFYTGSFVRSRGNITYGYFESVVKMGHSG
LSSAFWLKERGGREREIDVFEYSTSPNLDGDRRRPLANQYLMNVHTFQRR
GNQRIDHENSSFVVFDADLSRQEYVKAGLLWTRNKVVWYLNDTLVRELDH
AGEFRDAKMRVQFDREYFNWIGDPRRNDRFGDFEVMYIRTWQLQRSG*

mRNA from alignment at NODE_1885_length_7873_cov_4.390902:4886..5874+

Legend: polypeptidestart_codonCDSexonintronstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud8503.t1 ID=Gcaud8503.t1|Name=Gcaud8503.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=989bp|location=Sequence derived from alignment at NODE_1885_length_7873_cov_4.390902:4886..5874+ (Gracilaria caudata M_176_S67 male)
ATGGCCCTCCCAGAAGTCAGGTTTAAACCGAATCTTATCAATGGACATAA
CGATCCACCACCGCGATACATTTTGAACCGAGAATCGGCTGGTTGGAAAT
GGGTGAAGCAATACAACTTCTCCTCCGAGTTCAACACAGAAAGAGCCGGC
GAAGTAGTTCCAATGAATCAGCTCGATCGATGGACAACCGACAATCACTG
GCAAGGACGCTTCCCTGCCGTTTTCGATATGAACAATGTCACCTACGACG
GGCGATCCATGGTGTTAAGGGTGCGCCAACATAACGCCCCCACTTCAGGC
TTTCTTCGAACGTTTGGTGAGAGCCACCGAAGAGCTATCGACGAGAGAAT
GACAATGGGACGTCGCTTTTATACCGGCTCATTCGTGAGAAGCAGAGGAA
ACATCACGTACGGTTACTTTGAGAGCGTGGTCAAAATGGGACACTCTGGG
CTGTCGAGCGCGTTTTGGCTCAAGGAACGAGGTGGCAGAGAACGTGAGAT
CGACGTGTTTGAGTACAGCACGAGCCCAAATCTAGACGGAGACCGACGCA
GACCATTGGCCAATCAGTATCTCATGAATGTGCATACCTTTCAAAGACGT
GGAAATCAGCGGATCGATCATGAGAACTCGAGCTTTGTCGTGTTTGACGC
TGATTTGAGCAGGCAGGAATACGTCAAGGCGGGGCTGCTTTGGACAAGGA
ATAAGGTGGTCTGGTATCTTAACGACACGCTAGTGAGAGAACTGGATCAT
GCCGGGGAGTTCCGAGACGCGAAGATGCGTGTGCAGTTCGATCGGGAGTA
CTTCAACTGGATTGGAGATCCGCGCCGTAATGATCGGTTCGGCGACTTTG
AGGTGATGTACATTCGCACTTGGCAATTGTAAGTACTTGAGCTTTGAACT
AGTTTCTTATCTGGAGGATTCTCTGCAAAAGGTCTGACTCTCTGTTCGAA
TTGTTTTTCATTTTCTACAACAGGCAAAGGAGTGGATGA

Coding sequence (CDS) from alignment at NODE_1885_length_7873_cov_4.390902:4886..5874+

>Gcaud8503.t1 ID=Gcaud8503.t1|Name=Gcaud8503.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=894bp|location=Sequence derived from alignment at NODE_1885_length_7873_cov_4.390902:4886..5874+ (Gracilaria caudata M_176_S67 male)
ATGGCCCTCCCAGAAGTCAGGTTTAAACCGAATCTTATCAATGGACATAA
CGATCCACCACCGCGATACATTTTGAACCGAGAATCGGCTGGTTGGAAAT
GGGTGAAGCAATACAACTTCTCCTCCGAGTTCAACACAGAAAGAGCCGGC
GAAGTAGTTCCAATGAATCAGCTCGATCGATGGACAACCGACAATCACTG
GCAAGGACGCTTCCCTGCCGTTTTCGATATGAACAATGTCACCTACGACG
GGCGATCCATGGTGTTAAGGGTGCGCCAACATAACGCCCCCACTTCAGGC
TTTCTTCGAACGTTTGGTGAGAGCCACCGAAGAGCTATCGACGAGAGAAT
GACAATGGGACGTCGCTTTTATACCGGCTCATTCGTGAGAAGCAGAGGAA
ACATCACGTACGGTTACTTTGAGAGCGTGGTCAAAATGGGACACTCTGGG
CTGTCGAGCGCGTTTTGGCTCAAGGAACGAGGTGGCAGAGAACGTGAGAT
CGACGTGTTTGAGTACAGCACGAGCCCAAATCTAGACGGAGACCGACGCA
GACCATTGGCCAATCAGTATCTCATGAATGTGCATACCTTTCAAAGACGT
GGAAATCAGCGGATCGATCATGAGAACTCGAGCTTTGTCGTGTTTGACGC
TGATTTGAGCAGGCAGGAATACGTCAAGGCGGGGCTGCTTTGGACAAGGA
ATAAGGTGGTCTGGTATCTTAACGACACGCTAGTGAGAGAACTGGATCAT
GCCGGGGAGTTCCGAGACGCGAAGATGCGTGTGCAGTTCGATCGGGAGTA
CTTCAACTGGATTGGAGATCCGCGCCGTAATGATCGGTTCGGCGACTTTG
AGGTGATGTACATTCGCACTTGGCAATTGCAAAGGAGTGGATGA