Gcaud8502.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud8502.t1
Unique Name	Gcaud8502.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	635

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_1885_length_7873_cov_4.390902	contig	NODE_1885_length_7873_cov_4.390902:339..2327 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	2903.EOD14177
PFAMs	NAD_binding_8
Max annot lvl	2759\|Eukaryota
Evalue	1.06e-27
EggNOG OGs	2CYBD@1\|root,2S3CI@2759\|Eukaryota

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud8502	Gcaud8502	Gracilaria caudata M_176_S67 male	gene	NODE_1885_length_7873_cov_4.390902 339..2327 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud8502.t1	Gcaud8502.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_1885_length_7873_cov_4.390902 339..2327 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud8502.t1.stop1	Gcaud8502.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_1885_length_7873_cov_4.390902 339..341 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud8502.t1.CDS1	Gcaud8502.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_1885_length_7873_cov_4.390902 339..1965 -
Gcaud8502.t1.CDS2	Gcaud8502.t1.CDS2	Gracilaria caudata M_176_S67 male	CDS	NODE_1885_length_7873_cov_4.390902 2050..2327 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud8502.t1.exon1	Gcaud8502.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_1885_length_7873_cov_4.390902 339..1965 -
Gcaud8502.t1.exon2	Gcaud8502.t1.exon2	Gracilaria caudata M_176_S67 male	exon	NODE_1885_length_7873_cov_4.390902 2050..2327 -

The following intron feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud8502.t1.intron1	Gcaud8502.t1.intron1	Gracilaria caudata M_176_S67 male	intron	NODE_1885_length_7873_cov_4.390902 1966..2049 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud8502.t1.start1	Gcaud8502.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_1885_length_7873_cov_4.390902 2325..2327 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_1885_length_7873_cov_4.390902:339..2327-
coding sequence from alignment at NODE_1885_length_7873_cov_4.390902:339..2327-

mRNA sequence

>Gcaud8502.t1 ID=Gcaud8502.t1|Name=Gcaud8502.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=635bp
MPLSRQALASLLWLVFIPTLASGSTPSDCYVAIVGAGIGGVYTAWRLTVD
THTILPNQVCIFEASERPGGRIATVRNAVPGFERFTLDLGAYRFNRQSHP
LVRLLTEDVLKIPSSCYFDPLNLNPDSCISAQRKIFTARGKVFGLTPTGT
DSETAFENYTSEIPYNIEPQFRWNGASERTSPRSIFSLFLGPAPVIPELR
RYPELLAETNYTTAMRLADEIIVSLRNGSYKSVSYRDLTLWQVAVAEGFT
SEELRLTVDRGGPGNGVFLHSNVERLVQGFVRSAALEKAALKGVPGLFVP
VAQRDGKLRRIGMVTIIEKMLQQIKARGVRVFFGKKVTGIDRVGQTDSVR
KLRLSFHNGAALDVSKVVLNIGKPDLNALGLNSEPLKSASERFRRAVERV
ISSPFAKTYCFWEDAWWITKLNTSAGIVRTADESMFTARYHDGDYVCERD
EKSNGMKCRGALLVSYIAGDTTGGGSAITVRMFNDKPYSALTNSDAVRVM
VKGNMTAHEQMYYDTIHDQLRRAHASTFESFGMDVGTAIANATGCVVGDW
SLVGVHSERGAGRAEGENVFEMYTKAVPDLDISLVNEAWGDVYGWAEGSL
RSAERTLFHAYGVQKPPWLDEEFHESVIRKFNSG*

spliced messenger RNA

>Gcaud8502.t1 ID=Gcaud8502.t1|Name=Gcaud8502.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1905bp|location=Sequence derived from alignment at NODE_1885_length_7873_cov_4.390902:339..2327- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCCGCTTTCACGACAGGCTCTAGCATCGCTTCTGTGGCTTGTTTTCAT
TCCGACGCTCGCATCGGGCTCTACGCCATCCGATTGCTATGTCGCCATTG
TCGGCGCTGGTATCGGAGGAGTATATACTGCTTGGCGACTAACTGTCGAT
ACACACACTATACTTCCAAATCAAGTCTGCATCTTTGAGGCCTCAGAACG
ACCGGGTGGACGTATCGCAACCGTCAGAAATGCCGTCCCTGGCTTTGAGC
GTTTCACGCTCGATCTTGGTGCCTATCGATTCAATCGGCAATCGCATCCA
CTGGTGCGTCTTCTCACAGAGGACGTGCTCAAAATTCCATCCAGCTGTTA
CTTCGATCCTCTTAATCTCAACCCCGACTCATGCATTTCCGCCCAGCGCA
AGATCTTCACGGCGAGAGGAAAGGTGTTTGGCCTCACACCAACAGGTACA
GATTCCGAGACCGCGTTTGAGAACTACACATCTGAGATACCCTACAACAT
CGAGCCACAGTTCCGATGGAACGGTGCCTCCGAACGCACTTCACCTCGTT
CAATCTTCTCACTGTTTCTCGGTCCAGCCCCCGTAATCCCCGAACTGCGA
CGCTATCCGGAGCTCTTGGCGGAGACCAATTATACTACCGCTATGCGACT
TGCGGATGAGATCATTGTGTCCTTGCGAAACGGATCGTATAAGAGCGTGT
CTTATCGCGACTTGACCCTGTGGCAAGTGGCGGTTGCAGAGGGTTTCACT
TCGGAAGAACTACGTTTGACTGTTGATCGCGGTGGACCAGGTAACGGTGT
CTTTCTTCACAGCAACGTAGAAAGACTGGTACAAGGCTTTGTTCGGTCAG
CGGCGTTGGAAAAAGCAGCTCTGAAAGGAGTGCCTGGATTGTTCGTACCG
GTTGCACAACGTGACGGGAAGCTGAGACGCATTGGAATGGTAACTATCAT
CGAGAAAATGCTACAACAGATCAAGGCGCGTGGAGTGCGAGTGTTCTTCG
GGAAGAAGGTTACTGGAATTGATCGCGTGGGCCAAACGGATTCGGTGCGC
AAGTTGAGGTTGTCGTTCCACAATGGTGCGGCGTTGGATGTGAGCAAGGT
GGTGTTGAATATTGGAAAACCGGATCTCAATGCGTTGGGATTGAACTCGG
AACCACTCAAGAGCGCGTCCGAAAGATTCCGAAGGGCGGTAGAACGTGTG
ATATCATCACCTTTTGCCAAGACGTATTGCTTCTGGGAAGATGCGTGGTG
GATCACCAAGCTGAACACAAGTGCAGGGATTGTACGAACGGCTGATGAGA
GTATGTTCACAGCACGATATCACGATGGAGATTACGTTTGTGAGAGGGAC
GAGAAAAGCAATGGGATGAAATGCAGGGGTGCATTACTTGTTTCGTACAT
TGCTGGAGATACTACTGGAGGGGGATCTGCTATAACGGTGCGTATGTTTA
ACGATAAGCCTTACTCAGCTCTCACGAATTCAGACGCTGTTCGCGTGATG
GTGAAGGGCAACATGACGGCACATGAACAAATGTACTACGACACAATTCA
CGATCAGTTGCGAAGGGCACATGCCTCCACGTTCGAGTCGTTCGGCATGG
ACGTGGGCACGGCGATTGCGAATGCCACTGGCTGCGTGGTGGGCGATTGG
AGTCTGGTGGGTGTGCACTCGGAAAGAGGCGCGGGCAGAGCGGAGGGGGA
GAATGTGTTTGAGATGTACACGAAAGCGGTGCCGGACCTGGACATCTCGT
TGGTGAATGAGGCGTGGGGAGACGTGTACGGGTGGGCCGAAGGCTCTCTG
AGGAGCGCGGAGCGCACTTTGTTTCACGCGTACGGAGTACAGAAGCCGCC
GTGGTTGGACGAGGAATTCCATGAGTCAGTGATCCGCAAGTTCAACAGCG
GGTGA

protein sequence of Gcaud8502.t1

>Gcaud8502.t1 ID=Gcaud8502.t1|Name=Gcaud8502.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=635bp
MPLSRQALASLLWLVFIPTLASGSTPSDCYVAIVGAGIGGVYTAWRLTVD
THTILPNQVCIFEASERPGGRIATVRNAVPGFERFTLDLGAYRFNRQSHP
LVRLLTEDVLKIPSSCYFDPLNLNPDSCISAQRKIFTARGKVFGLTPTGT
DSETAFENYTSEIPYNIEPQFRWNGASERTSPRSIFSLFLGPAPVIPELR
RYPELLAETNYTTAMRLADEIIVSLRNGSYKSVSYRDLTLWQVAVAEGFT
SEELRLTVDRGGPGNGVFLHSNVERLVQGFVRSAALEKAALKGVPGLFVP
VAQRDGKLRRIGMVTIIEKMLQQIKARGVRVFFGKKVTGIDRVGQTDSVR
KLRLSFHNGAALDVSKVVLNIGKPDLNALGLNSEPLKSASERFRRAVERV
ISSPFAKTYCFWEDAWWITKLNTSAGIVRTADESMFTARYHDGDYVCERD
EKSNGMKCRGALLVSYIAGDTTGGGSAITVRMFNDKPYSALTNSDAVRVM
VKGNMTAHEQMYYDTIHDQLRRAHASTFESFGMDVGTAIANATGCVVGDW
SLVGVHSERGAGRAEGENVFEMYTKAVPDLDISLVNEAWGDVYGWAEGSL
RSAERTLFHAYGVQKPPWLDEEFHESVIRKFNSG*

mRNA from alignment at NODE_1885_length_7873_cov_4.390902:339..2327-

Legend: polypeptideCDSexonstart_codonintronstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud8502.t1 ID=Gcaud8502.t1|Name=Gcaud8502.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1989bp|location=Sequence derived from alignment at NODE_1885_length_7873_cov_4.390902:339..2327- (Gracilaria caudata M_176_S67 male)
ATGCCGCTTTCACGACAGGCTCTAGCATCGCTTCTGTGGCTTGTTTTCAT
TCCGACGCTCGCATCGGGCTCTACGCCATCCGATTGCTATGTCGCCATTG
TCGGCGCTGGTATCGGAGGAGTATATACTGCTTGGCGACTAACTGTCGAT
ACACACACTATACTTCCAAATCAAGTCTGCATCTTTGAGGCCTCAGAACG
ACCGGGTGGACGTATCGCAACCGTCAGAAATGCCGTCCCTGGCTTTGAGC
GTTTCACGCTCGATCTTGGTGCCTATCGGTAAGTGCACATATTCGCGTCG
CTTTTCTCTAAGTCACGGCGCTGACCAGGTGGTTGTTGGTTTGTTCTGTG
TGTGACATATAGATTCAATCGGCAATCGCATCCACTGGTGCGTCTTCTCA
CAGAGGACGTGCTCAAAATTCCATCCAGCTGTTACTTCGATCCTCTTAAT
CTCAACCCCGACTCATGCATTTCCGCCCAGCGCAAGATCTTCACGGCGAG
AGGAAAGGTGTTTGGCCTCACACCAACAGGTACAGATTCCGAGACCGCGT
TTGAGAACTACACATCTGAGATACCCTACAACATCGAGCCACAGTTCCGA
TGGAACGGTGCCTCCGAACGCACTTCACCTCGTTCAATCTTCTCACTGTT
TCTCGGTCCAGCCCCCGTAATCCCCGAACTGCGACGCTATCCGGAGCTCT
TGGCGGAGACCAATTATACTACCGCTATGCGACTTGCGGATGAGATCATT
GTGTCCTTGCGAAACGGATCGTATAAGAGCGTGTCTTATCGCGACTTGAC
CCTGTGGCAAGTGGCGGTTGCAGAGGGTTTCACTTCGGAAGAACTACGTT
TGACTGTTGATCGCGGTGGACCAGGTAACGGTGTCTTTCTTCACAGCAAC
GTAGAAAGACTGGTACAAGGCTTTGTTCGGTCAGCGGCGTTGGAAAAAGC
AGCTCTGAAAGGAGTGCCTGGATTGTTCGTACCGGTTGCACAACGTGACG
GGAAGCTGAGACGCATTGGAATGGTAACTATCATCGAGAAAATGCTACAA
CAGATCAAGGCGCGTGGAGTGCGAGTGTTCTTCGGGAAGAAGGTTACTGG
AATTGATCGCGTGGGCCAAACGGATTCGGTGCGCAAGTTGAGGTTGTCGT
TCCACAATGGTGCGGCGTTGGATGTGAGCAAGGTGGTGTTGAATATTGGA
AAACCGGATCTCAATGCGTTGGGATTGAACTCGGAACCACTCAAGAGCGC
GTCCGAAAGATTCCGAAGGGCGGTAGAACGTGTGATATCATCACCTTTTG
CCAAGACGTATTGCTTCTGGGAAGATGCGTGGTGGATCACCAAGCTGAAC
ACAAGTGCAGGGATTGTACGAACGGCTGATGAGAGTATGTTCACAGCACG
ATATCACGATGGAGATTACGTTTGTGAGAGGGACGAGAAAAGCAATGGGA
TGAAATGCAGGGGTGCATTACTTGTTTCGTACATTGCTGGAGATACTACT
GGAGGGGGATCTGCTATAACGGTGCGTATGTTTAACGATAAGCCTTACTC
AGCTCTCACGAATTCAGACGCTGTTCGCGTGATGGTGAAGGGCAACATGA
CGGCACATGAACAAATGTACTACGACACAATTCACGATCAGTTGCGAAGG
GCACATGCCTCCACGTTCGAGTCGTTCGGCATGGACGTGGGCACGGCGAT
TGCGAATGCCACTGGCTGCGTGGTGGGCGATTGGAGTCTGGTGGGTGTGC
ACTCGGAAAGAGGCGCGGGCAGAGCGGAGGGGGAGAATGTGTTTGAGATG
TACACGAAAGCGGTGCCGGACCTGGACATCTCGTTGGTGAATGAGGCGTG
GGGAGACGTGTACGGGTGGGCCGAAGGCTCTCTGAGGAGCGCGGAGCGCA
CTTTGTTTCACGCGTACGGAGTACAGAAGCCGCCGTGGTTGGACGAGGAA
TTCCATGAGTCAGTGATCCGCAAGTTCAACAGCGGGTGA

Coding sequence (CDS) from alignment at NODE_1885_length_7873_cov_4.390902:339..2327-

>Gcaud8502.t1 ID=Gcaud8502.t1|Name=Gcaud8502.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1905bp|location=Sequence derived from alignment at NODE_1885_length_7873_cov_4.390902:339..2327- (Gracilaria caudata M_176_S67 male)
ATGCCGCTTTCACGACAGGCTCTAGCATCGCTTCTGTGGCTTGTTTTCAT
TCCGACGCTCGCATCGGGCTCTACGCCATCCGATTGCTATGTCGCCATTG
TCGGCGCTGGTATCGGAGGAGTATATACTGCTTGGCGACTAACTGTCGAT
ACACACACTATACTTCCAAATCAAGTCTGCATCTTTGAGGCCTCAGAACG
ACCGGGTGGACGTATCGCAACCGTCAGAAATGCCGTCCCTGGCTTTGAGC
GTTTCACGCTCGATCTTGGTGCCTATCGATTCAATCGGCAATCGCATCCA
CTGGTGCGTCTTCTCACAGAGGACGTGCTCAAAATTCCATCCAGCTGTTA
CTTCGATCCTCTTAATCTCAACCCCGACTCATGCATTTCCGCCCAGCGCA
AGATCTTCACGGCGAGAGGAAAGGTGTTTGGCCTCACACCAACAGGTACA
GATTCCGAGACCGCGTTTGAGAACTACACATCTGAGATACCCTACAACAT
CGAGCCACAGTTCCGATGGAACGGTGCCTCCGAACGCACTTCACCTCGTT
CAATCTTCTCACTGTTTCTCGGTCCAGCCCCCGTAATCCCCGAACTGCGA
CGCTATCCGGAGCTCTTGGCGGAGACCAATTATACTACCGCTATGCGACT
TGCGGATGAGATCATTGTGTCCTTGCGAAACGGATCGTATAAGAGCGTGT
CTTATCGCGACTTGACCCTGTGGCAAGTGGCGGTTGCAGAGGGTTTCACT
TCGGAAGAACTACGTTTGACTGTTGATCGCGGTGGACCAGGTAACGGTGT
CTTTCTTCACAGCAACGTAGAAAGACTGGTACAAGGCTTTGTTCGGTCAG
CGGCGTTGGAAAAAGCAGCTCTGAAAGGAGTGCCTGGATTGTTCGTACCG
GTTGCACAACGTGACGGGAAGCTGAGACGCATTGGAATGGTAACTATCAT
CGAGAAAATGCTACAACAGATCAAGGCGCGTGGAGTGCGAGTGTTCTTCG
GGAAGAAGGTTACTGGAATTGATCGCGTGGGCCAAACGGATTCGGTGCGC
AAGTTGAGGTTGTCGTTCCACAATGGTGCGGCGTTGGATGTGAGCAAGGT
GGTGTTGAATATTGGAAAACCGGATCTCAATGCGTTGGGATTGAACTCGG
AACCACTCAAGAGCGCGTCCGAAAGATTCCGAAGGGCGGTAGAACGTGTG
ATATCATCACCTTTTGCCAAGACGTATTGCTTCTGGGAAGATGCGTGGTG
GATCACCAAGCTGAACACAAGTGCAGGGATTGTACGAACGGCTGATGAGA
GTATGTTCACAGCACGATATCACGATGGAGATTACGTTTGTGAGAGGGAC
GAGAAAAGCAATGGGATGAAATGCAGGGGTGCATTACTTGTTTCGTACAT
TGCTGGAGATACTACTGGAGGGGGATCTGCTATAACGGTGCGTATGTTTA
ACGATAAGCCTTACTCAGCTCTCACGAATTCAGACGCTGTTCGCGTGATG
GTGAAGGGCAACATGACGGCACATGAACAAATGTACTACGACACAATTCA
CGATCAGTTGCGAAGGGCACATGCCTCCACGTTCGAGTCGTTCGGCATGG
ACGTGGGCACGGCGATTGCGAATGCCACTGGCTGCGTGGTGGGCGATTGG
AGTCTGGTGGGTGTGCACTCGGAAAGAGGCGCGGGCAGAGCGGAGGGGGA
GAATGTGTTTGAGATGTACACGAAAGCGGTGCCGGACCTGGACATCTCGT
TGGTGAATGAGGCGTGGGGAGACGTGTACGGGTGGGCCGAAGGCTCTCTG
AGGAGCGCGGAGCGCACTTTGTTTCACGCGTACGGAGTACAGAAGCCGCC
GTGGTTGGACGAGGAATTCCATGAGTCAGTGATCCGCAAGTTCAACAGCG
GGTGA