Gcaud850.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud850.t1
Unique Name	Gcaud850.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	453

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_1229_length_12344_cov_4.015506	contig	NODE_1229_length_12344_cov_4.015506:2070..3428 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud850	Gcaud850	Gracilaria caudata M_176_S67 male	gene	NODE_1229_length_12344_cov_4.015506 2070..3428 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud850.t1.start1	Gcaud850.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_1229_length_12344_cov_4.015506 2070..2072 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud850.t1.CDS1	Gcaud850.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_1229_length_12344_cov_4.015506 2070..3428 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud850.t1.exon1	Gcaud850.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_1229_length_12344_cov_4.015506 2070..3428 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud850.t1.stop1	Gcaud850.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_1229_length_12344_cov_4.015506 3426..3428 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud850.t1	Gcaud850.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_1229_length_12344_cov_4.015506 2070..3428 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_1229_length_12344_cov_4.015506:2070..3428+
coding sequence from alignment at NODE_1229_length_12344_cov_4.015506:2070..3428+

mRNA sequence

>Gcaud850.t1 ID=Gcaud850.t1|Name=Gcaud850.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=453bp
MRPTRNGADAIMAYWVLFSGENVGGWIRTDCLVPYHPVYAATLLVPSDIP
IFRDRRIALRVAEREYNQRPSRFGYHPADMRHLVSLCSIPINDFVDIKSQ
DSQADRESDRTHSNQNTPSPPQDYMQDSDTDDHNHSSEHAGPRRSGRMTL
RPRLAKREQQLQPSRVLRSRSRKPSAVETEPSQSDDDDCLYIPVKSEPKE
LVTTANHAAPAGRRPTLPNGVQPQHQQPTLHSAAKPFVRRKRGRPRKHPL
PEQKTPADSRITKPEPAVTQPRVVKGEPIDALTHIPTQMSYRRQFRRKKR
GRPRKVVQPPEPPASEAKESTSQIIDRMQRRITRQEKQIVLLSQQQKLQD
AAQGSSVGHSTLPSISFLTKTPDPDNIKAQTERFVQKMLNFQRLAVQFGV
EAERFQEAKKNCEEAWKAVVEEGRGTEEQAMELEGFLSKLPSLAEFLRTV
RM*

spliced messenger RNA

>Gcaud850.t1 ID=Gcaud850.t1|Name=Gcaud850.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1359bp|location=Sequence derived from alignment at NODE_1229_length_12344_cov_4.015506:2070..3428+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAGGCCCACCCGAAACGGAGCAGATGCCATCATGGCCTACTGGGTCCT
CTTCTCCGGCGAGAACGTGGGCGGCTGGATTCGCACCGACTGCCTCGTAC
CCTACCACCCCGTATACGCCGCCACCCTTCTTGTCCCATCTGACATTCCC
ATCTTCAGAGATCGTCGAATCGCGCTTCGCGTCGCCGAACGTGAGTACAA
CCAACGCCCCTCTCGTTTCGGATACCACCCCGCCGATATGCGACACCTCG
TGTCGCTGTGTAGCATTCCAATTAACGACTTTGTCGACATCAAGAGCCAA
GACTCGCAAGCAGATCGCGAATCCGACCGCACTCACTCAAACCAAAATAC
CCCTAGCCCCCCCCAAGACTATATGCAAGACTCCGATACCGACGACCACA
ATCATTCTTCCGAACACGCTGGTCCGCGTCGCTCGGGACGCATGACATTA
AGACCTCGTCTGGCCAAACGCGAGCAACAATTGCAACCGTCTCGTGTGTT
GCGCTCAAGAAGCCGCAAACCTTCCGCCGTAGAAACAGAGCCCTCACAGT
CTGATGATGACGATTGTCTGTACATCCCTGTAAAATCCGAGCCAAAGGAG
CTTGTCACCACGGCCAATCACGCCGCACCTGCAGGGCGCCGTCCCACGCT
TCCAAATGGTGTGCAGCCTCAGCATCAGCAGCCCACACTGCACTCAGCCG
CCAAACCTTTTGTCCGCCGGAAACGTGGCCGTCCTCGAAAGCATCCCCTT
CCTGAGCAAAAGACGCCCGCTGATTCCAGGATTACGAAGCCGGAGCCCGC
AGTGACGCAGCCGAGGGTCGTCAAAGGAGAGCCAATTGACGCCTTGACTC
ACATACCCACCCAGATGTCTTACAGAAGGCAGTTCAGGCGAAAGAAGCGC
GGAAGGCCTCGCAAAGTTGTTCAGCCACCAGAGCCGCCGGCATCAGAAGC
CAAAGAGAGCACCTCGCAGATTATTGACAGGATGCAGAGAAGAATCACCA
GGCAAGAGAAGCAAATAGTCCTTCTGTCCCAGCAACAAAAGTTACAAGAC
GCTGCGCAAGGCTCGTCTGTAGGACATAGCACGCTACCTTCCATCTCCTT
TCTCACAAAGACACCGGACCCAGACAACATCAAGGCCCAGACAGAACGAT
TTGTGCAGAAGATGCTCAACTTTCAGAGATTGGCGGTGCAGTTCGGAGTT
GAGGCTGAGAGATTCCAGGAAGCGAAGAAAAACTGCGAAGAAGCTTGGAA
GGCTGTAGTCGAAGAGGGTCGCGGTACAGAAGAGCAAGCCATGGAGTTGG
AGGGGTTCCTGTCCAAACTGCCCAGCTTGGCAGAATTCCTTCGTACTGTT
AGAATGTAG

protein sequence of Gcaud850.t1

>Gcaud850.t1 ID=Gcaud850.t1|Name=Gcaud850.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=453bp
MRPTRNGADAIMAYWVLFSGENVGGWIRTDCLVPYHPVYAATLLVPSDIP
IFRDRRIALRVAEREYNQRPSRFGYHPADMRHLVSLCSIPINDFVDIKSQ
DSQADRESDRTHSNQNTPSPPQDYMQDSDTDDHNHSSEHAGPRRSGRMTL
RPRLAKREQQLQPSRVLRSRSRKPSAVETEPSQSDDDDCLYIPVKSEPKE
LVTTANHAAPAGRRPTLPNGVQPQHQQPTLHSAAKPFVRRKRGRPRKHPL
PEQKTPADSRITKPEPAVTQPRVVKGEPIDALTHIPTQMSYRRQFRRKKR
GRPRKVVQPPEPPASEAKESTSQIIDRMQRRITRQEKQIVLLSQQQKLQD
AAQGSSVGHSTLPSISFLTKTPDPDNIKAQTERFVQKMLNFQRLAVQFGV
EAERFQEAKKNCEEAWKAVVEEGRGTEEQAMELEGFLSKLPSLAEFLRTV
RM*

mRNA from alignment at NODE_1229_length_12344_cov_4.015506:2070..3428+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud850.t1 ID=Gcaud850.t1|Name=Gcaud850.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1359bp|location=Sequence derived from alignment at NODE_1229_length_12344_cov_4.015506:2070..3428+ (Gracilaria caudata M_176_S67 male)
ATGAGGCCCACCCGAAACGGAGCAGATGCCATCATGGCCTACTGGGTCCT
CTTCTCCGGCGAGAACGTGGGCGGCTGGATTCGCACCGACTGCCTCGTAC
CCTACCACCCCGTATACGCCGCCACCCTTCTTGTCCCATCTGACATTCCC
ATCTTCAGAGATCGTCGAATCGCGCTTCGCGTCGCCGAACGTGAGTACAA
CCAACGCCCCTCTCGTTTCGGATACCACCCCGCCGATATGCGACACCTCG
TGTCGCTGTGTAGCATTCCAATTAACGACTTTGTCGACATCAAGAGCCAA
GACTCGCAAGCAGATCGCGAATCCGACCGCACTCACTCAAACCAAAATAC
CCCTAGCCCCCCCCAAGACTATATGCAAGACTCCGATACCGACGACCACA
ATCATTCTTCCGAACACGCTGGTCCGCGTCGCTCGGGACGCATGACATTA
AGACCTCGTCTGGCCAAACGCGAGCAACAATTGCAACCGTCTCGTGTGTT
GCGCTCAAGAAGCCGCAAACCTTCCGCCGTAGAAACAGAGCCCTCACAGT
CTGATGATGACGATTGTCTGTACATCCCTGTAAAATCCGAGCCAAAGGAG
CTTGTCACCACGGCCAATCACGCCGCACCTGCAGGGCGCCGTCCCACGCT
TCCAAATGGTGTGCAGCCTCAGCATCAGCAGCCCACACTGCACTCAGCCG
CCAAACCTTTTGTCCGCCGGAAACGTGGCCGTCCTCGAAAGCATCCCCTT
CCTGAGCAAAAGACGCCCGCTGATTCCAGGATTACGAAGCCGGAGCCCGC
AGTGACGCAGCCGAGGGTCGTCAAAGGAGAGCCAATTGACGCCTTGACTC
ACATACCCACCCAGATGTCTTACAGAAGGCAGTTCAGGCGAAAGAAGCGC
GGAAGGCCTCGCAAAGTTGTTCAGCCACCAGAGCCGCCGGCATCAGAAGC
CAAAGAGAGCACCTCGCAGATTATTGACAGGATGCAGAGAAGAATCACCA
GGCAAGAGAAGCAAATAGTCCTTCTGTCCCAGCAACAAAAGTTACAAGAC
GCTGCGCAAGGCTCGTCTGTAGGACATAGCACGCTACCTTCCATCTCCTT
TCTCACAAAGACACCGGACCCAGACAACATCAAGGCCCAGACAGAACGAT
TTGTGCAGAAGATGCTCAACTTTCAGAGATTGGCGGTGCAGTTCGGAGTT
GAGGCTGAGAGATTCCAGGAAGCGAAGAAAAACTGCGAAGAAGCTTGGAA
GGCTGTAGTCGAAGAGGGTCGCGGTACAGAAGAGCAAGCCATGGAGTTGG
AGGGGTTCCTGTCCAAACTGCCCAGCTTGGCAGAATTCCTTCGTACTGTT
AGAATGTAG

Coding sequence (CDS) from alignment at NODE_1229_length_12344_cov_4.015506:2070..3428+

>Gcaud850.t1 ID=Gcaud850.t1|Name=Gcaud850.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1359bp|location=Sequence derived from alignment at NODE_1229_length_12344_cov_4.015506:2070..3428+ (Gracilaria caudata M_176_S67 male)
ATGAGGCCCACCCGAAACGGAGCAGATGCCATCATGGCCTACTGGGTCCT
CTTCTCCGGCGAGAACGTGGGCGGCTGGATTCGCACCGACTGCCTCGTAC
CCTACCACCCCGTATACGCCGCCACCCTTCTTGTCCCATCTGACATTCCC
ATCTTCAGAGATCGTCGAATCGCGCTTCGCGTCGCCGAACGTGAGTACAA
CCAACGCCCCTCTCGTTTCGGATACCACCCCGCCGATATGCGACACCTCG
TGTCGCTGTGTAGCATTCCAATTAACGACTTTGTCGACATCAAGAGCCAA
GACTCGCAAGCAGATCGCGAATCCGACCGCACTCACTCAAACCAAAATAC
CCCTAGCCCCCCCCAAGACTATATGCAAGACTCCGATACCGACGACCACA
ATCATTCTTCCGAACACGCTGGTCCGCGTCGCTCGGGACGCATGACATTA
AGACCTCGTCTGGCCAAACGCGAGCAACAATTGCAACCGTCTCGTGTGTT
GCGCTCAAGAAGCCGCAAACCTTCCGCCGTAGAAACAGAGCCCTCACAGT
CTGATGATGACGATTGTCTGTACATCCCTGTAAAATCCGAGCCAAAGGAG
CTTGTCACCACGGCCAATCACGCCGCACCTGCAGGGCGCCGTCCCACGCT
TCCAAATGGTGTGCAGCCTCAGCATCAGCAGCCCACACTGCACTCAGCCG
CCAAACCTTTTGTCCGCCGGAAACGTGGCCGTCCTCGAAAGCATCCCCTT
CCTGAGCAAAAGACGCCCGCTGATTCCAGGATTACGAAGCCGGAGCCCGC
AGTGACGCAGCCGAGGGTCGTCAAAGGAGAGCCAATTGACGCCTTGACTC
ACATACCCACCCAGATGTCTTACAGAAGGCAGTTCAGGCGAAAGAAGCGC
GGAAGGCCTCGCAAAGTTGTTCAGCCACCAGAGCCGCCGGCATCAGAAGC
CAAAGAGAGCACCTCGCAGATTATTGACAGGATGCAGAGAAGAATCACCA
GGCAAGAGAAGCAAATAGTCCTTCTGTCCCAGCAACAAAAGTTACAAGAC
GCTGCGCAAGGCTCGTCTGTAGGACATAGCACGCTACCTTCCATCTCCTT
TCTCACAAAGACACCGGACCCAGACAACATCAAGGCCCAGACAGAACGAT
TTGTGCAGAAGATGCTCAACTTTCAGAGATTGGCGGTGCAGTTCGGAGTT
GAGGCTGAGAGATTCCAGGAAGCGAAGAAAAACTGCGAAGAAGCTTGGAA
GGCTGTAGTCGAAGAGGGTCGCGGTACAGAAGAGCAAGCCATGGAGTTGG
AGGGGTTCCTGTCCAAACTGCCCAGCTTGGCAGAATTCCTTCGTACTGTT
AGAATGTAG