Gcaud8494.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud8494.t1
Unique Name	Gcaud8494.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	482

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_1032_length_14828_cov_4.591708	contig	NODE_1032_length_14828_cov_4.591708:5587..9073 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud8494	Gcaud8494	Gracilaria caudata M_176_S67 male	gene	NODE_1032_length_14828_cov_4.591708 5587..9073 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud8494.t1	Gcaud8494.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_1032_length_14828_cov_4.591708 5587..9073 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud8494.t1.start1	Gcaud8494.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_1032_length_14828_cov_4.591708 5587..5589 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud8494.t1.CDS1	Gcaud8494.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_1032_length_14828_cov_4.591708 5587..6485 +
Gcaud8494.t1.CDS2	Gcaud8494.t1.CDS2	Gracilaria caudata M_176_S67 male	CDS	NODE_1032_length_14828_cov_4.591708 6582..6596 +
Gcaud8494.t1.CDS3	Gcaud8494.t1.CDS3	Gracilaria caudata M_176_S67 male	CDS	NODE_1032_length_14828_cov_4.591708 8542..9073 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud8494.t1.exon1	Gcaud8494.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_1032_length_14828_cov_4.591708 5587..6485 +
Gcaud8494.t1.exon2	Gcaud8494.t1.exon2	Gracilaria caudata M_176_S67 male	exon	NODE_1032_length_14828_cov_4.591708 6582..6596 +
Gcaud8494.t1.exon3	Gcaud8494.t1.exon3	Gracilaria caudata M_176_S67 male	exon	NODE_1032_length_14828_cov_4.591708 8542..9073 +

The following intron feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud8494.t1.intron1	Gcaud8494.t1.intron1	Gracilaria caudata M_176_S67 male	intron	NODE_1032_length_14828_cov_4.591708 6486..6581 +
Gcaud8494.t1.intron2	Gcaud8494.t1.intron2	Gracilaria caudata M_176_S67 male	intron	NODE_1032_length_14828_cov_4.591708 6597..8541 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud8494.t1.stop1	Gcaud8494.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_1032_length_14828_cov_4.591708 9071..9073 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_1032_length_14828_cov_4.591708:5587..9073+
coding sequence from alignment at NODE_1032_length_14828_cov_4.591708:5587..9073+

mRNA sequence

>Gcaud8494.t1 ID=Gcaud8494.t1|Name=Gcaud8494.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=482bp
MALPQGEEWRLPEAYYNSPYFVVRRLGQTAEDILGEAPLPPLKPRSVVRK
RASSDASTLVTLSSCESIEKGYSSHSCNSNPPRKNSELRQRSGRKRGGEG
DHGKRRKKAKVVAQLKAPGETKSACDSDGVAQGMKQHTEQQKPVMLRLRV
KEPYEVDEDGFLIERPTRIARNRKRATGQSGSRSERRKRARTAVPQQTAR
SDSRAHGRAPTTRTALLTDRTRAEGEKQSVKLPSDCPKAAVGTGARKSES
KGTTMLRSAQVPDHIRRRWENNGYGEAPKPRPKWTTMLRSAKVPDDVRRR
WESDGVYTILSKLVGSVHSFPSQASQICAMGIICSCIGVKFGRRSREMQP
HEALQQLNDIYKRFTYLQAMEDRSANRFSESSLAKVNAVEGGEVLMRNGG
GRFTLQDVLMRNGGGRFTLQEVTPLRERAEGSESVCSTRSWGSDGECARY
GIDVSNPPPVRSRILYFENLSRKVLGRLEMV*

spliced messenger RNA

>Gcaud8494.t1 ID=Gcaud8494.t1|Name=Gcaud8494.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1446bp|location=Sequence derived from alignment at NODE_1032_length_14828_cov_4.591708:5587..9073+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCTCTCCCACAGGGAGAAGAGTGGCGTCTACCCGAGGCGTACTACAA
TTCCCCCTACTTTGTGGTTCGTCGACTAGGCCAAACTGCGGAAGATATAC
TCGGTGAGGCCCCACTGCCTCCGCTTAAGCCACGTTCTGTTGTTAGAAAA
CGCGCATCCTCCGATGCATCCACGCTAGTCACTCTCTCCAGCTGTGAATC
GATTGAAAAAGGATATTCATCACACAGCTGCAATTCAAATCCCCCACGCA
AGAACTCAGAGCTACGTCAACGTTCGGGACGCAAGCGTGGGGGTGAAGGT
GATCACGGGAAAAGAAGGAAGAAGGCGAAGGTCGTGGCGCAGTTGAAGGC
TCCAGGAGAGACCAAGAGCGCGTGTGACAGTGACGGGGTCGCGCAAGGGA
TGAAGCAGCATACTGAGCAACAGAAACCTGTGATGCTCAGGCTGCGCGTG
AAGGAGCCGTACGAGGTTGATGAGGACGGCTTCCTCATCGAGCGACCCAC
ACGCATTGCTCGCAACCGAAAACGCGCCACGGGACAGAGTGGAAGCCGGT
CGGAGCGGAGGAAGAGAGCAAGGACAGCGGTGCCACAGCAGACAGCGAGG
AGTGACTCGAGGGCACATGGTCGGGCACCCACGACCAGGACGGCTTTGCT
CACGGACCGCACCAGAGCGGAGGGAGAAAAGCAATCGGTCAAGCTTCCTA
GCGATTGTCCGAAAGCGGCAGTGGGGACAGGAGCTAGAAAATCGGAGTCG
AAGGGCACGACGATGTTGAGATCAGCGCAAGTGCCGGACCATATTCGACG
GAGGTGGGAGAATAACGGTTACGGTGAAGCTCCAAAACCGCGGCCAAAGT
GGACCACGATGTTAAGGTCCGCAAAAGTGCCGGATGACGTTCGACGGAGG
TGGGAGAGCGATGGGGTGTACACTATCCTTTCAAAACTTGTGGGCTCAGT
TCATTCGTTTCCTTCTCAAGCTTCTCAAATTTGCGCGATGGGTATCATTT
GCAGCTGCATTGGCGTCAAGTTTGGAAGGAGGTCCAGAGAGATGCAGCCA
CATGAAGCGTTGCAACAGTTGAATGATATCTACAAGCGTTTCACTTATCT
GCAGGCTATGGAAGATCGCTCGGCCAACCGTTTCTCTGAAAGTTCGTTGG
CGAAGGTGAATGCGGTGGAAGGAGGGGAAGTGCTTATGCGGAACGGAGGC
GGTCGTTTTACCCTGCAGGATGTGCTTATGCGGAACGGAGGCGGTCGGTT
TACTTTGCAGGAGGTGACTCCTCTGCGAGAGAGGGCGGAGGGGAGTGAGT
CCGTTTGTTCTACAAGAAGTTGGGGAAGTGATGGTGAGTGCGCTCGGTAT
GGCATTGACGTTTCTAATCCACCTCCGGTGCGATCGCGCATCTTGTACTT
TGAGAATCTGAGTAGAAAGGTTTTGGGTCGATTAGAAATGGTGTAG

protein sequence of Gcaud8494.t1

>Gcaud8494.t1 ID=Gcaud8494.t1|Name=Gcaud8494.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=482bp
MALPQGEEWRLPEAYYNSPYFVVRRLGQTAEDILGEAPLPPLKPRSVVRK
RASSDASTLVTLSSCESIEKGYSSHSCNSNPPRKNSELRQRSGRKRGGEG
DHGKRRKKAKVVAQLKAPGETKSACDSDGVAQGMKQHTEQQKPVMLRLRV
KEPYEVDEDGFLIERPTRIARNRKRATGQSGSRSERRKRARTAVPQQTAR
SDSRAHGRAPTTRTALLTDRTRAEGEKQSVKLPSDCPKAAVGTGARKSES
KGTTMLRSAQVPDHIRRRWENNGYGEAPKPRPKWTTMLRSAKVPDDVRRR
WESDGVYTILSKLVGSVHSFPSQASQICAMGIICSCIGVKFGRRSREMQP
HEALQQLNDIYKRFTYLQAMEDRSANRFSESSLAKVNAVEGGEVLMRNGG
GRFTLQDVLMRNGGGRFTLQEVTPLRERAEGSESVCSTRSWGSDGECARY
GIDVSNPPPVRSRILYFENLSRKVLGRLEMV*

mRNA from alignment at NODE_1032_length_14828_cov_4.591708:5587..9073+

Legend: polypeptidestart_codonCDSexonintronstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud8494.t1 ID=Gcaud8494.t1|Name=Gcaud8494.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=3487bp|location=Sequence derived from alignment at NODE_1032_length_14828_cov_4.591708:5587..9073+ (Gracilaria caudata M_176_S67 male)
ATGGCTCTCCCACAGGGAGAAGAGTGGCGTCTACCCGAGGCGTACTACAA
TTCCCCCTACTTTGTGGTTCGTCGACTAGGCCAAACTGCGGAAGATATAC
TCGGTGAGGCCCCACTGCCTCCGCTTAAGCCACGTTCTGTTGTTAGAAAA
CGCGCATCCTCCGATGCATCCACGCTAGTCACTCTCTCCAGCTGTGAATC
GATTGAAAAAGGATATTCATCACACAGCTGCAATTCAAATCCCCCACGCA
AGAACTCAGAGCTACGTCAACGTTCGGGACGCAAGCGTGGGGGTGAAGGT
GATCACGGGAAAAGAAGGAAGAAGGCGAAGGTCGTGGCGCAGTTGAAGGC
TCCAGGAGAGACCAAGAGCGCGTGTGACAGTGACGGGGTCGCGCAAGGGA
TGAAGCAGCATACTGAGCAACAGAAACCTGTGATGCTCAGGCTGCGCGTG
AAGGAGCCGTACGAGGTTGATGAGGACGGCTTCCTCATCGAGCGACCCAC
ACGCATTGCTCGCAACCGAAAACGCGCCACGGGACAGAGTGGAAGCCGGT
CGGAGCGGAGGAAGAGAGCAAGGACAGCGGTGCCACAGCAGACAGCGAGG
AGTGACTCGAGGGCACATGGTCGGGCACCCACGACCAGGACGGCTTTGCT
CACGGACCGCACCAGAGCGGAGGGAGAAAAGCAATCGGTCAAGCTTCCTA
GCGATTGTCCGAAAGCGGCAGTGGGGACAGGAGCTAGAAAATCGGAGTCG
AAGGGCACGACGATGTTGAGATCAGCGCAAGTGCCGGACCATATTCGACG
GAGGTGGGAGAATAACGGTTACGGTGAAGCTCCAAAACCGCGGCCAAAGT
GGACCACGATGTTAAGGTCCGCAAAAGTGCCGGATGACGTTCGACGGAGG
TGGGAGAGCGATGGGAAAGGCGGAGCTCCAAAACCGCGGCCGAAGTGGAC
GACGATGTTAAGGTCCGCGAAAGTGCCGCATGACGTCCGACGGAGGTGGG
AGAGCGATGGGTACGGCGGAGCGAAATCGTCACAAGACAAACGCGATCGT
CACGTGTGAGAGGCGCGCCCGCCCCGAAGCGAGAAGAAAAGCCAAGCACA
CACTGAATAAAATGACTTGCACTTGGTGGGATTACGCTTGCGCCCTCGTA
GTTTCTCACCCCAGCGCAATAAGCGCTGGCAAAGGAGTGGATGAACAAGC
GAGACTCATCGTATCGGTTCCCGGCGGGCGGCCTGTGCCGGCAGGGAGGA
GCAGATGCCGTGGACACGTCACTGTCAGCCCCCTGTGCTCTTTCACCTGC
TGTCACCTGAACGGCTGCCATGTGAACACGTCGTACAGTTCACCCTGCAT
GCTGCTTCGAATGCGTCCCCCTCCACGGCTTGTAAGCGACGCCCGTTTCT
TGTCGCTCGTTGTCGCTGGCCCTCCATCGCATTCCTCTCCTCTGTTCGCC
TTCCAAACTGCCCTCTCTGCTCCGGTTCTGCTCCGTCTCTGACTGGCTTT
CGTCCCCGCCGTCGCACTCGTGCACTGCTTTTACACTTGTTGCTCGCTCT
TCTTCCACACCCGGCACCCACGTCCGACCTCGTCATCTACGAGCCCAATT
CCTGCTCTTACCCTGGAGCAGTTTCCGCTCATTCTCGCTCTAACATTCGC
TTAACAGCGTTTTTGTGCATCGCGTTCTCATTGATTTACGGACTGGGTCC
CCGTATCTACCATTTCTTCACGAGTTTGCAGTGACATGGCCAACTCTCTC
AGCTCACGACGACACCGTACCCCATTATGCGCGATTCCTGTCCAGAAAAC
GCGCACCAAGCGTCTCTCTCTCAAGTCCTCCCCCCTTCCACTGAAAAAGC
GTTCAAATTATCGCTGCATTCCCAATCGCTCCCTTTCACGCGACCGTGAA
TCAAAGTCGCCCAACTTCACCCTTTCACCGGCAAGCAGTTCGTATCTGCA
CCCCGCCCCAAATTCTGCTCGCAGCCTTTCCATTGACAAACTGGTCAGTG
CAATATCTGGCGTGCACATTGACCCTTCAAGATGGCGCAATTTTAgctcc
aacaaggcgtcagcggcagcgcttcaagcagcatgagcaaaacctcgcat
gctgcgaacttgatgccttcgctcctcatgaaaactTTTCGCTACCAGCT
TAGCTTTTCCGACACTTTCATTACTGCATTAAAAATTATTCTTTTATCTA
TTGCCCTAATTTAGCGTGTATCATGCGTTTCTCAGCGCTGTCCACGTACA
CAAGTGTGACGGAAGTACACGGTACACAGTCTGTCAGagacccaggtaga
gaacgaaacagattttatagaaaacggataagggaaagctTGCCCCCTAT
GTACataactgcgactccgtcaactgaagaaaaattacaccaatttcttg
tgtttcctctgtgatgaactttgatgtcgaagtatttgtttgcagatgta
catcttttcaacgtctcctttcatcaagctgggcttctctgcaacactgt
gtgatgcgttcaaccatttcgtgtagccaaaaaattctgttgccgtagtg
aggacaagtgaactgagacgtcggttgagtcctttcatgatttgtcaggg
actccttgcgccccgtcAAACGTAAATCCGAAAGCAAGCGAGTGTAAGCA
TTGTACTTATGATAGGTGTTTTGGATTACAATTCGGAGCGATGAGCGTGC
TTGCTAAATTACGTGGCTGATGGAGTCGTCCTGGGTCAAGCAATTGAACC
TGTTGCCGTTTTGGTATGGAAAGATGACCATTTGTTGTTCACGTCGCGAC
AATACCACTTAATTGATTAATTCTTTAAGTAGAACCAGGCTCAGAAATCG
TGGACACCAAGGACGATGACTGGAATATCAGTATAAAAGCGAACTCTTCT
CCGAAGAAGTGTCGCATGCCCTTCGCTCCCCATATCTCATCGTTTTCTCT
CGCAGGGTGTACACTATCCTTTCAAAACTTGTGGGCTCAGTTCATTCGTT
TCCTTCTCAAGCTTCTCAAATTTGCGCGATGGGTATCATTTGCAGCTGCA
TTGGCGTCAAGTTTGGAAGGAGGTCCAGAGAGATGCAGCCACATGAAGCG
TTGCAACAGTTGAATGATATCTACAAGCGTTTCACTTATCTGCAGGCTAT
GGAAGATCGCTCGGCCAACCGTTTCTCTGAAAGTTCGTTGGCGAAGGTGA
ATGCGGTGGAAGGAGGGGAAGTGCTTATGCGGAACGGAGGCGGTCGTTTT
ACCCTGCAGGATGTGCTTATGCGGAACGGAGGCGGTCGGTTTACTTTGCA
GGAGGTGACTCCTCTGCGAGAGAGGGCGGAGGGGAGTGAGTCCGTTTGTT
CTACAAGAAGTTGGGGAAGTGATGGTGAGTGCGCTCGGTATGGCATTGAC
GTTTCTAATCCACCTCCGGTGCGATCGCGCATCTTGTACTTTGAGAATCT
GAGTAGAAAGGTTTTGGGTCGATTAGAAATGGTGTAG

Coding sequence (CDS) from alignment at NODE_1032_length_14828_cov_4.591708:5587..9073+

>Gcaud8494.t1 ID=Gcaud8494.t1|Name=Gcaud8494.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1446bp|location=Sequence derived from alignment at NODE_1032_length_14828_cov_4.591708:5587..9073+ (Gracilaria caudata M_176_S67 male)
ATGGCTCTCCCACAGGGAGAAGAGTGGCGTCTACCCGAGGCGTACTACAA
TTCCCCCTACTTTGTGGTTCGTCGACTAGGCCAAACTGCGGAAGATATAC
TCGGTGAGGCCCCACTGCCTCCGCTTAAGCCACGTTCTGTTGTTAGAAAA
CGCGCATCCTCCGATGCATCCACGCTAGTCACTCTCTCCAGCTGTGAATC
GATTGAAAAAGGATATTCATCACACAGCTGCAATTCAAATCCCCCACGCA
AGAACTCAGAGCTACGTCAACGTTCGGGACGCAAGCGTGGGGGTGAAGGT
GATCACGGGAAAAGAAGGAAGAAGGCGAAGGTCGTGGCGCAGTTGAAGGC
TCCAGGAGAGACCAAGAGCGCGTGTGACAGTGACGGGGTCGCGCAAGGGA
TGAAGCAGCATACTGAGCAACAGAAACCTGTGATGCTCAGGCTGCGCGTG
AAGGAGCCGTACGAGGTTGATGAGGACGGCTTCCTCATCGAGCGACCCAC
ACGCATTGCTCGCAACCGAAAACGCGCCACGGGACAGAGTGGAAGCCGGT
CGGAGCGGAGGAAGAGAGCAAGGACAGCGGTGCCACAGCAGACAGCGAGG
AGTGACTCGAGGGCACATGGTCGGGCACCCACGACCAGGACGGCTTTGCT
CACGGACCGCACCAGAGCGGAGGGAGAAAAGCAATCGGTCAAGCTTCCTA
GCGATTGTCCGAAAGCGGCAGTGGGGACAGGAGCTAGAAAATCGGAGTCG
AAGGGCACGACGATGTTGAGATCAGCGCAAGTGCCGGACCATATTCGACG
GAGGTGGGAGAATAACGGTTACGGTGAAGCTCCAAAACCGCGGCCAAAGT
GGACCACGATGTTAAGGTCCGCAAAAGTGCCGGATGACGTTCGACGGAGG
TGGGAGAGCGATGGGGTGTACACTATCCTTTCAAAACTTGTGGGCTCAGT
TCATTCGTTTCCTTCTCAAGCTTCTCAAATTTGCGCGATGGGTATCATTT
GCAGCTGCATTGGCGTCAAGTTTGGAAGGAGGTCCAGAGAGATGCAGCCA
CATGAAGCGTTGCAACAGTTGAATGATATCTACAAGCGTTTCACTTATCT
GCAGGCTATGGAAGATCGCTCGGCCAACCGTTTCTCTGAAAGTTCGTTGG
CGAAGGTGAATGCGGTGGAAGGAGGGGAAGTGCTTATGCGGAACGGAGGC
GGTCGTTTTACCCTGCAGGATGTGCTTATGCGGAACGGAGGCGGTCGGTT
TACTTTGCAGGAGGTGACTCCTCTGCGAGAGAGGGCGGAGGGGAGTGAGT
CCGTTTGTTCTACAAGAAGTTGGGGAAGTGATGGTGAGTGCGCTCGGTAT
GGCATTGACGTTTCTAATCCACCTCCGGTGCGATCGCGCATCTTGTACTT
TGAGAATCTGAGTAGAAAGGTTTTGGGTCGATTAGAAATGGTGTAG