Gcaud849.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud849.t1
Unique Name	Gcaud849.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	355

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_5540_length_1531_cov_4.240278	contig	NODE_5540_length_1531_cov_4.240278:469..1531 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	1123508.JH636452_gene7034
PFAMs	An_peroxidase,Dockerin_1,SdrD_B
Max annot lvl	203682\|Planctomycetes
Evalue	6.83e-49
EggNOG OGs	COG2373@1\|root,COG2373@2\|Bacteria,2IY3Z@203682\|Planctomycetes
Description	Animal haem peroxidase
COG category	C

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud849	Gcaud849	Gracilaria caudata M_176_S67 male	gene	NODE_5540_length_1531_cov_4.240278 469..1531 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud849.t1.start1	Gcaud849.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_5540_length_1531_cov_4.240278 469..471 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud849.t1.CDS1	Gcaud849.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_5540_length_1531_cov_4.240278 469..1531 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud849.t1.exon1	Gcaud849.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_5540_length_1531_cov_4.240278 469..1531 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud849.t1	Gcaud849.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_5540_length_1531_cov_4.240278 469..1531 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_5540_length_1531_cov_4.240278:469..1531+
coding sequence from alignment at NODE_5540_length_1531_cov_4.240278:469..1531+

mRNA sequence

>Gcaud849.t1 ID=Gcaud849.t1|Name=Gcaud849.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=355bp
MKLILAPLLLTLFSIALAQAPRRRGRGADLFNPLPPRSPRAAAFSLSSAP
ASPIDQECAALSVRTLDGRCTSAVDPNLGQARRPQFSYLGVDSSNFADEG
LVSARVISNIVSDQPGDTRNSRRLNELFVFFGQFIDHDFALSPLSETEVE
IEVPEDDPDLRVHSLAFERSTRGLVSAASTAQRPITTLSSALDLSTVYGS
DEQRNAFLRVPNSCRLKTSEGNNLPFNTEAFANSPSTSASLYIAGDTRVN
EHPVLTSIHTIFLREHNNICDLLEDALPDMEPDSMYEAARAINIAQYQKV
IYEEWLPAMLGRPLPRYAGYKQNVDPTISVEFTTAGFRLGHTMVGNGVSR
IDANX

spliced messenger RNA

>Gcaud849.t1 ID=Gcaud849.t1|Name=Gcaud849.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1063bp|location=Sequence derived from alignment at NODE_5540_length_1531_cov_4.240278:469..1531+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAAGTTAATCCTTGCTCCTCTGCTCCTCACCCTCTTCTCCATAGCCCT
CGCCCAGGCGCCTCGAAGGAGGGGACGCGGCGCAGATCTCTTCAACCCTC
TTCCGCCCAGATCTCCTCGTGCAGCCGCCTTCTCGCTCTCCTCAGCCCCC
GCCTCCCCCATCGACCAGGAATGTGCCGCTCTTTCTGTCCGAACGCTCGA
TGGTCGCTGCACCTCTGCCGTCGACCCCAACCTCGGCCAGGCCCGTCGCC
CCCAGTTCAGTTACCTCGGCGTCGATTCTTCCAATTTTGCTGATGAGGGA
CTTGTCAGCGCCCGCGTTATCTCCAACATCGTGTCGGACCAACCTGGCGA
CACTCGCAACTCACGTCGTTTGAACGAACTGTTTGTGTTCTTCGGTCAGT
TTATCGATCACGACTTTGCGCTGTCGCCGCTTTCTGAAACCGAGGTCGAA
ATCGAGGTGCCGGAAGACGATCCAGATCTCCGTGTCCACTCCTTGGCGTT
CGAGCGATCCACCCGCGGTCTCGTCAGTGCTGCTTCCACTGCTCAGCGCC
CCATTACCACCCTTTCCTCTGCCCTCGACTTGTCCACTGTGTATGGATCT
GACGAACAGCGAAATGCGTTCCTCAGGGTGCCCAACTCATGTCGTCTAAA
GACCTCCGAAGGCAACAACCTCCCGTTCAACACAGAAGCCTTTGCCAACT
CTCCGTCCACCTCCGCTTCGCTGTACATCGCCGGAGACACTCGAGTGAAT
GAACACCCAGTTCTCACATCCATCCATACTATCTTCCTTCGTGAACACAA
TAACATCTGTGACCTCCTCGAGGACGCCCTACCCGACATGGAACCCGACA
GCATGTATGAGGCAGCTCGCGCCATCAACATCGCCCAGTACCAAAAGGTT
ATCTACGAGGAGTGGTTACCGGCTATGTTGGGTCGCCCTCTTCCTCGTTA
TGCCGGCTACAAGCAGAATGTCGACCCCACTATTAGTGTGGAGTTCACTA
CGGCCGGTTTCCGACTCGGGCACACCATGGTTGGCAACGGAGTGAGCAGG
ATCGACGCCAACG

protein sequence of Gcaud849.t1

>Gcaud849.t1 ID=Gcaud849.t1|Name=Gcaud849.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=355bp
MKLILAPLLLTLFSIALAQAPRRRGRGADLFNPLPPRSPRAAAFSLSSAP
ASPIDQECAALSVRTLDGRCTSAVDPNLGQARRPQFSYLGVDSSNFADEG
LVSARVISNIVSDQPGDTRNSRRLNELFVFFGQFIDHDFALSPLSETEVE
IEVPEDDPDLRVHSLAFERSTRGLVSAASTAQRPITTLSSALDLSTVYGS
DEQRNAFLRVPNSCRLKTSEGNNLPFNTEAFANSPSTSASLYIAGDTRVN
EHPVLTSIHTIFLREHNNICDLLEDALPDMEPDSMYEAARAINIAQYQKV
IYEEWLPAMLGRPLPRYAGYKQNVDPTISVEFTTAGFRLGHTMVGNGVSR
IDANX

mRNA from alignment at NODE_5540_length_1531_cov_4.240278:469..1531+

Legend: start_codonpolypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud849.t1 ID=Gcaud849.t1|Name=Gcaud849.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1063bp|location=Sequence derived from alignment at NODE_5540_length_1531_cov_4.240278:469..1531+ (Gracilaria caudata M_176_S67 male)
ATGAAGTTAATCCTTGCTCCTCTGCTCCTCACCCTCTTCTCCATAGCCCT
CGCCCAGGCGCCTCGAAGGAGGGGACGCGGCGCAGATCTCTTCAACCCTC
TTCCGCCCAGATCTCCTCGTGCAGCCGCCTTCTCGCTCTCCTCAGCCCCC
GCCTCCCCCATCGACCAGGAATGTGCCGCTCTTTCTGTCCGAACGCTCGA
TGGTCGCTGCACCTCTGCCGTCGACCCCAACCTCGGCCAGGCCCGTCGCC
CCCAGTTCAGTTACCTCGGCGTCGATTCTTCCAATTTTGCTGATGAGGGA
CTTGTCAGCGCCCGCGTTATCTCCAACATCGTGTCGGACCAACCTGGCGA
CACTCGCAACTCACGTCGTTTGAACGAACTGTTTGTGTTCTTCGGTCAGT
TTATCGATCACGACTTTGCGCTGTCGCCGCTTTCTGAAACCGAGGTCGAA
ATCGAGGTGCCGGAAGACGATCCAGATCTCCGTGTCCACTCCTTGGCGTT
CGAGCGATCCACCCGCGGTCTCGTCAGTGCTGCTTCCACTGCTCAGCGCC
CCATTACCACCCTTTCCTCTGCCCTCGACTTGTCCACTGTGTATGGATCT
GACGAACAGCGAAATGCGTTCCTCAGGGTGCCCAACTCATGTCGTCTAAA
GACCTCCGAAGGCAACAACCTCCCGTTCAACACAGAAGCCTTTGCCAACT
CTCCGTCCACCTCCGCTTCGCTGTACATCGCCGGAGACACTCGAGTGAAT
GAACACCCAGTTCTCACATCCATCCATACTATCTTCCTTCGTGAACACAA
TAACATCTGTGACCTCCTCGAGGACGCCCTACCCGACATGGAACCCGACA
GCATGTATGAGGCAGCTCGCGCCATCAACATCGCCCAGTACCAAAAGGTT
ATCTACGAGGAGTGGTTACCGGCTATGTTGGGTCGCCCTCTTCCTCGTTA
TGCCGGCTACAAGCAGAATGTCGACCCCACTATTAGTGTGGAGTTCACTA
CGGCCGGTTTCCGACTCGGGCACACCATGGTTGGCAACGGAGTGAGCAGG
ATCGACGCCAACG

Coding sequence (CDS) from alignment at NODE_5540_length_1531_cov_4.240278:469..1531+

>Gcaud849.t1 ID=Gcaud849.t1|Name=Gcaud849.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1063bp|location=Sequence derived from alignment at NODE_5540_length_1531_cov_4.240278:469..1531+ (Gracilaria caudata M_176_S67 male)
ATGAAGTTAATCCTTGCTCCTCTGCTCCTCACCCTCTTCTCCATAGCCCT
CGCCCAGGCGCCTCGAAGGAGGGGACGCGGCGCAGATCTCTTCAACCCTC
TTCCGCCCAGATCTCCTCGTGCAGCCGCCTTCTCGCTCTCCTCAGCCCCC
GCCTCCCCCATCGACCAGGAATGTGCCGCTCTTTCTGTCCGAACGCTCGA
TGGTCGCTGCACCTCTGCCGTCGACCCCAACCTCGGCCAGGCCCGTCGCC
CCCAGTTCAGTTACCTCGGCGTCGATTCTTCCAATTTTGCTGATGAGGGA
CTTGTCAGCGCCCGCGTTATCTCCAACATCGTGTCGGACCAACCTGGCGA
CACTCGCAACTCACGTCGTTTGAACGAACTGTTTGTGTTCTTCGGTCAGT
TTATCGATCACGACTTTGCGCTGTCGCCGCTTTCTGAAACCGAGGTCGAA
ATCGAGGTGCCGGAAGACGATCCAGATCTCCGTGTCCACTCCTTGGCGTT
CGAGCGATCCACCCGCGGTCTCGTCAGTGCTGCTTCCACTGCTCAGCGCC
CCATTACCACCCTTTCCTCTGCCCTCGACTTGTCCACTGTGTATGGATCT
GACGAACAGCGAAATGCGTTCCTCAGGGTGCCCAACTCATGTCGTCTAAA
GACCTCCGAAGGCAACAACCTCCCGTTCAACACAGAAGCCTTTGCCAACT
CTCCGTCCACCTCCGCTTCGCTGTACATCGCCGGAGACACTCGAGTGAAT
GAACACCCAGTTCTCACATCCATCCATACTATCTTCCTTCGTGAACACAA
TAACATCTGTGACCTCCTCGAGGACGCCCTACCCGACATGGAACCCGACA
GCATGTATGAGGCAGCTCGCGCCATCAACATCGCCCAGTACCAAAAGGTT
ATCTACGAGGAGTGGTTACCGGCTATGTTGGGTCGCCCTCTTCCTCGTTA
TGCCGGCTACAAGCAGAATGTCGACCCCACTATTAGTGTGGAGTTCACTA
CGGCCGGTTTCCGACTCGGGCACACCATGGTTGGCAACGGAGTGAGCAGG
ATCGACGCCAACG